Gcaud3286.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3286.t1
Unique Name	Gcaud3286.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_84_length_54915_cov_4.457829	contig	NODE_84_length_54915_cov_4.457829:24443..25390 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	626887.J057_20950
Preferred name	etfA
PFAMs	ETF,ETF_alpha
Max annot lvl	1236\|Gammaproteobacteria
KEGG ko	ko:K03522
Evalue	6.93e-92
EggNOG OGs	COG2025@1\|root,COG2025@2\|Bacteria,1MUFI@1224\|Proteobacteria,1RMK7@1236\|Gammaproteobacteria,465NP@72275\|Alteromonadaceae
Description	electron transfer flavoprotein, alpha subunit
COG category	C
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3286	Gcaud3286	Gracilaria caudata M_176_S67 male	gene	NODE_84_length_54915_cov_4.457829 24443..25390 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3286.t1.start1	Gcaud3286.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_84_length_54915_cov_4.457829 24443..24445 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3286.t1.CDS1	Gcaud3286.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_84_length_54915_cov_4.457829 24443..25390 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3286.t1.exon1	Gcaud3286.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_84_length_54915_cov_4.457829 24443..25390 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3286.t1.stop1	Gcaud3286.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_84_length_54915_cov_4.457829 25388..25390 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3286.t1	Gcaud3286.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_84_length_54915_cov_4.457829 24443..25390 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+
coding sequence from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+

mRNA sequence

>Gcaud3286.t1 ID=Gcaud3286.t1|Name=Gcaud3286.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=316bp
MSTTALVVGDSASFAVRSAIQAAKACVGSGKVDLLLIGKGATAAADTASR
WSTISTVYPVEEETPATAESATPIIQQQVVKKHYEYLIAAANSFGKNVLP
RVAGVLGVSAVSDITEVVESNVFVRPIYAGNALATVKCTEDIKVLTVRPT
AFEPVEESNEGLAEVVKVENSSEGIRSRWVGQATTENAGPDLTAAGVVVA
GGRGLKSKENFQMLEEMANELGGAVGATRAAVDSGYVPNDLQVGQTGKVV
APQLYIGVGLSGAIQHLAGMKDSKTIVAINKDADAPIFQVADYGLVADLF
EAVPELLQKIKALPK*

spliced messenger RNA

>Gcaud3286.t1 ID=Gcaud3286.t1|Name=Gcaud3286.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGACAGCGCTTGTGGTTGGAGATAGTGCATCATTCGCCGTGCG
CAGCGCGATACAAGCAGCCAAGGCGTGCGTCGGGTCCGGCAAGGTTGATC
TACTTTTAATTGGAAAGGGAGCCACTGCTGCCGCTGACACTGCGTCTCGG
TGGAGCACGATAAGCACGGTCTATCCAGTGGAGGAAGAAACACCTGCGAC
AGCAGAATCAGCCACCCCTATTATTCAGCAACAGGTTGTCAAAAAGCACT
ATGAGTACTTGATCGCAGCGGCGAATTCGTTCGGAAAAAATGTGCTGCCT
AGAGTTGCTGGTGTGTTAGGCGTGTCTGCGGTTTCTGATATAACTGAAGT
TGTCGAAAGCAACGTATTTGTGCGGCCGATCTATGCGGGGAATGCGCTGG
CAACTGTCAAATGCACGGAAGACATCAAAGTGCTTACGGTGCGACCCACT
GCTTTCGAACCAGTCGAAGAGAGCAACGAAGGATTGGCGGAAGTGGTGAA
GGTTGAGAACTCATCAGAAGGAATCCGTTCTAGATGGGTCGGACAAGCGA
CAACTGAAAATGCAGGCCCCGATTTGACGGCGGCCGGCGTGGTTGTTGCT
GGTGGAAGAGGTCTGAAGAGCAAAGAGAACTTCCAAATGCTGGAAGAAAT
GGCGAATGAACTTGGTGGTGCTGTGGGCGCTACTCGGGCGGCTGTTGATT
CTGGATATGTGCCGAACGATTTGCAAGTTGGGCAAACCGGTAAAGTGGTC
GCGCCCCAGCTTTACATCGGTGTTGGTCTGAGTGGCGCGATTCAGCATCT
GGCTGGAATGAAGGATTCGAAGACAATTGTGGCTATTAACAAGGATGCTG
ATGCTCCTATATTCCAGGTGGCGGATTATGGACTTGTTGCAGACCTTTTT
GAGGCAGTCCCAGAGCTGTTGCAGAAGATAAAGGCTCTTCCAAAGTGA

protein sequence of Gcaud3286.t1

>Gcaud3286.t1 ID=Gcaud3286.t1|Name=Gcaud3286.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=316bp
MSTTALVVGDSASFAVRSAIQAAKACVGSGKVDLLLIGKGATAAADTASR
WSTISTVYPVEEETPATAESATPIIQQQVVKKHYEYLIAAANSFGKNVLP
RVAGVLGVSAVSDITEVVESNVFVRPIYAGNALATVKCTEDIKVLTVRPT
AFEPVEESNEGLAEVVKVENSSEGIRSRWVGQATTENAGPDLTAAGVVVA
GGRGLKSKENFQMLEEMANELGGAVGATRAAVDSGYVPNDLQVGQTGKVV
APQLYIGVGLSGAIQHLAGMKDSKTIVAINKDADAPIFQVADYGLVADLF
EAVPELLQKIKALPK*

mRNA from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3286.t1 ID=Gcaud3286.t1|Name=Gcaud3286.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+ (Gracilaria caudata M_176_S67 male)
ATGAGCACGACAGCGCTTGTGGTTGGAGATAGTGCATCATTCGCCGTGCG
CAGCGCGATACAAGCAGCCAAGGCGTGCGTCGGGTCCGGCAAGGTTGATC
TACTTTTAATTGGAAAGGGAGCCACTGCTGCCGCTGACACTGCGTCTCGG
TGGAGCACGATAAGCACGGTCTATCCAGTGGAGGAAGAAACACCTGCGAC
AGCAGAATCAGCCACCCCTATTATTCAGCAACAGGTTGTCAAAAAGCACT
ATGAGTACTTGATCGCAGCGGCGAATTCGTTCGGAAAAAATGTGCTGCCT
AGAGTTGCTGGTGTGTTAGGCGTGTCTGCGGTTTCTGATATAACTGAAGT
TGTCGAAAGCAACGTATTTGTGCGGCCGATCTATGCGGGGAATGCGCTGG
CAACTGTCAAATGCACGGAAGACATCAAAGTGCTTACGGTGCGACCCACT
GCTTTCGAACCAGTCGAAGAGAGCAACGAAGGATTGGCGGAAGTGGTGAA
GGTTGAGAACTCATCAGAAGGAATCCGTTCTAGATGGGTCGGACAAGCGA
CAACTGAAAATGCAGGCCCCGATTTGACGGCGGCCGGCGTGGTTGTTGCT
GGTGGAAGAGGTCTGAAGAGCAAAGAGAACTTCCAAATGCTGGAAGAAAT
GGCGAATGAACTTGGTGGTGCTGTGGGCGCTACTCGGGCGGCTGTTGATT
CTGGATATGTGCCGAACGATTTGCAAGTTGGGCAAACCGGTAAAGTGGTC
GCGCCCCAGCTTTACATCGGTGTTGGTCTGAGTGGCGCGATTCAGCATCT
GGCTGGAATGAAGGATTCGAAGACAATTGTGGCTATTAACAAGGATGCTG
ATGCTCCTATATTCCAGGTGGCGGATTATGGACTTGTTGCAGACCTTTTT
GAGGCAGTCCCAGAGCTGTTGCAGAAGATAAAGGCTCTTCCAAAGTGA

Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+

>Gcaud3286.t1 ID=Gcaud3286.t1|Name=Gcaud3286.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=948bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:24443..25390+ (Gracilaria caudata M_176_S67 male)
ATGAGCACGACAGCGCTTGTGGTTGGAGATAGTGCATCATTCGCCGTGCG
CAGCGCGATACAAGCAGCCAAGGCGTGCGTCGGGTCCGGCAAGGTTGATC
TACTTTTAATTGGAAAGGGAGCCACTGCTGCCGCTGACACTGCGTCTCGG
TGGAGCACGATAAGCACGGTCTATCCAGTGGAGGAAGAAACACCTGCGAC
AGCAGAATCAGCCACCCCTATTATTCAGCAACAGGTTGTCAAAAAGCACT
ATGAGTACTTGATCGCAGCGGCGAATTCGTTCGGAAAAAATGTGCTGCCT
AGAGTTGCTGGTGTGTTAGGCGTGTCTGCGGTTTCTGATATAACTGAAGT
TGTCGAAAGCAACGTATTTGTGCGGCCGATCTATGCGGGGAATGCGCTGG
CAACTGTCAAATGCACGGAAGACATCAAAGTGCTTACGGTGCGACCCACT
GCTTTCGAACCAGTCGAAGAGAGCAACGAAGGATTGGCGGAAGTGGTGAA
GGTTGAGAACTCATCAGAAGGAATCCGTTCTAGATGGGTCGGACAAGCGA
CAACTGAAAATGCAGGCCCCGATTTGACGGCGGCCGGCGTGGTTGTTGCT
GGTGGAAGAGGTCTGAAGAGCAAAGAGAACTTCCAAATGCTGGAAGAAAT
GGCGAATGAACTTGGTGGTGCTGTGGGCGCTACTCGGGCGGCTGTTGATT
CTGGATATGTGCCGAACGATTTGCAAGTTGGGCAAACCGGTAAAGTGGTC
GCGCCCCAGCTTTACATCGGTGTTGGTCTGAGTGGCGCGATTCAGCATCT
GGCTGGAATGAAGGATTCGAAGACAATTGTGGCTATTAACAAGGATGCTG
ATGCTCCTATATTCCAGGTGGCGGATTATGGACTTGTTGCAGACCTTTTT
GAGGCAGTCCCAGAGCTGTTGCAGAAGATAAAGGCTCTTCCAAAGTGA