Gcaud1720.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1720.t2
Unique NameGcaud1720.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_849_length_17037_cov_4.361560contigNODE_849_length_17037_cov_4.361560:8265..10243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog323850.Shew_1291
Preferred namehisS
PFAMsHGTP_anticodon,tRNA-synt_His
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00055,RC00523
KEGG koko:K01892
KEGG ReactionR03655
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004821,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue4.58e-64
EggNOG OGsCOG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,1RPHI@1236|Gammaproteobacteria,2Q8TK@267890|Shewanellaceae
EC6.1.1.21
DescriptionPFAM tRNA synthetase class II (G H P and S)
COG categoryJ
BiGG ReactioniE2348C_1286.E2348C_2797,iECNA114_1301.ECNA114_2592,iECSF_1327.ECSF_2358
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1720Gcaud1720Gracilaria caudata M_176_S67 malegeneNODE_849_length_17037_cov_4.361560 8265..10243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t2Gcaud1720.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_849_length_17037_cov_4.361560 8265..10243 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t2.stop1Gcaud1720.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_849_length_17037_cov_4.361560 8265..8267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t2.CDS1Gcaud1720.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 8265..9588 -
Gcaud1720.t2.CDS2Gcaud1720.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 9844..9932 -
Gcaud1720.t2.CDS3Gcaud1720.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 10039..10099 -
Gcaud1720.t2.CDS4Gcaud1720.t2.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 10206..10243 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t2.exon1Gcaud1720.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 8265..9588 -
Gcaud1720.t2.exon2Gcaud1720.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 9844..9932 -
Gcaud1720.t2.exon3Gcaud1720.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 10039..10099 -
Gcaud1720.t2.exon4Gcaud1720.t2.exon4Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 10206..10243 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t2.intron1Gcaud1720.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_849_length_17037_cov_4.361560 9589..9843 -
Gcaud1720.t2.intron2Gcaud1720.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_849_length_17037_cov_4.361560 9933..10038 -
Gcaud1720.t2.intron3Gcaud1720.t2.intron3Gracilaria caudata M_176_S67 maleintronNODE_849_length_17037_cov_4.361560 10100..10205 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t2.start1Gcaud1720.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_849_length_17037_cov_4.361560 10241..10243 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1720.t2 ID=Gcaud1720.t2|Name=Gcaud1720.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp
MSTIEQLFYFFYTLAKDASCTKGTYLTVLIIPTTHTTSLTVIKISLHKPC
EAEVQNCVTLNHGLVRGCRDILGRTASHRRHLVNSFAALCSVYNFHEIET
PILERANLFSQSLGTGSEVISSEMYHIAETNPALALRPEGTAGVARALKD
VGLLKCAPVYGTRVWYAGPMFRHERPQKGRYRQFWQMGVEAVGDDSVSTD
LDTIGLAAQYLSSIQCNTKLRLNTLGNKDTRKAYNDALKQFLKSRYWALS
SLSRGRYDSGNCMRILDSKLPEDSDVMSTAPQLRDFVDEVEKERFKEVCS
LLEEARIPFLIDDRLVRGLEYYTSTAFEFLGPGGKAVCGGGRYTNVCGAS
GIGFAIGLDRIESEQCEGIASYDRNLENGVVVIGLSRTAERSDCEIGRTA
RRVVKEFRDRGIKCVGRLEGGRLSKMVGRAARSGAMAVVVLGEQDLDQAT
ARVKFVSADCEQDPQQKSLVDVVDVVCRRARGEGETADDGGAVPLVQNIS
RVE*
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spliced messenger RNA

>Gcaud1720.t2 ID=Gcaud1720.t2|Name=Gcaud1720.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:8265..10243- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCATTGAACAGCTTTTCTATTTCTTTTACACGCTTGCGAAAGA
TGCGAGTTGTACGAAGGGTACCTATCTAACCGTACTAATCATCCCCACGA
CACACACCACCTCGCTCACCGTCATAAAGATATCGTTGCACAAACCCTGT
GAAGCAGAAGTACAAAACTGTGTAACCTTGAATCATGGTCTGGTTCGCGG
TTGTCGAGATATCTTAGGTCGTACAGCCTCACATCGAAGGCACCTTGTAA
ACTCCTTTGCAGCGCTATGTTCCGTCTACAACTTTCACGAAATTGAAACT
CCTATCCTTGAACGTGCCAACCTCTTCTCGCAATCGCTCGGAACCGGCTC
CGAGGTGATCTCATCTGAAATGTACCATATCGCGGAAACAAACCCTGCGC
TCGCGCTTCGCCCGGAAGGAACTGCAGGTGTGGCTCGTGCTTTGAAGGAC
GTTGGCTTGCTCAAATGTGCCCCCGTTTATGGAACGCGTGTGTGGTACGC
CGGCCCAATGTTTCGCCATGAGAGACCCCAAAAAGGTCGCTACCGCCAAT
TTTGGCAGATGGGAGTTGAAGCTGTAGGTGATGATTCCGTGTCTACAGAT
TTGGATACCATTGGTTTGGCTGCACAATACCTCAGCTCCATTCAATGCAA
CACCAAACTTCGACTAAACACGCTTGGAAACAAAGACACACGGAAGGCGT
ATAACGACGCTCTGAAGCAATTTTTGAAGAGTCGATACTGGGCATTGTCC
TCATTAAGTCGTGGCCGGTATGACAGCGGTAACTGCATGCGTATTTTGGA
CAGCAAGCTTCCAGAAGACTCTGATGTCATGTCTACAGCGCCGCAGTTAC
GCGACTTTGTCGATGAAGTTGAAAAAGAGCGCTTCAAAGAGGTATGTAGT
CTACTGGAGGAAGCGCGGATTCCGTTCTTGATAGACGATCGATTGGTCCG
AGGCCTTGAATATTACACAAGTACAGCATTTGAATTTCTTGGACCGGGGG
GAAAGGCTGTTTGTGGGGGTGGGAGATATACAAACGTGTGCGGTGCTAGT
GGTATTGGATTTGCTATCGGACTGGATCGCATCGAGAGCGAGCAATGTGA
GGGAATAGCATCGTATGACCGCAACCTTGAAAACGGTGTGGTCGTGATCG
GACTCTCCAGAACTGCAGAACGAAGCGATTGCGAAATTGGGAGAACGGCA
AGAAGAGTGGTGAAAGAGTTCAGAGACAGGGGTATTAAATGTGTAGGTAG
ATTAGAAGGAGGGAGGTTATCAAAGATGGTGGGACGCGCAGCCCGATCAG
GCGCAATGGCAGTAGTAGTGCTTGGAGAACAGGACTTGGATCAAGCAACG
GCACGGGTGAAGTTTGTAAGCGCCGACTGTGAACAAGATCCACAGCAAAA
GAGTCTGGTAGACGTAGTAGATGTCGTGTGCAGGCGTGCCCGTGGTGAAG
GTGAAACCGCAGATGACGGTGGTGCGGTACCTTTGGTACAAAACATTAGT
CGAGTGGAGTAA
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protein sequence of Gcaud1720.t2

>Gcaud1720.t2 ID=Gcaud1720.t2|Name=Gcaud1720.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=504bp
MSTIEQLFYFFYTLAKDASCTKGTYLTVLIIPTTHTTSLTVIKISLHKPC
EAEVQNCVTLNHGLVRGCRDILGRTASHRRHLVNSFAALCSVYNFHEIET
PILERANLFSQSLGTGSEVISSEMYHIAETNPALALRPEGTAGVARALKD
VGLLKCAPVYGTRVWYAGPMFRHERPQKGRYRQFWQMGVEAVGDDSVSTD
LDTIGLAAQYLSSIQCNTKLRLNTLGNKDTRKAYNDALKQFLKSRYWALS
SLSRGRYDSGNCMRILDSKLPEDSDVMSTAPQLRDFVDEVEKERFKEVCS
LLEEARIPFLIDDRLVRGLEYYTSTAFEFLGPGGKAVCGGGRYTNVCGAS
GIGFAIGLDRIESEQCEGIASYDRNLENGVVVIGLSRTAERSDCEIGRTA
RRVVKEFRDRGIKCVGRLEGGRLSKMVGRAARSGAMAVVVLGEQDLDQAT
ARVKFVSADCEQDPQQKSLVDVVDVVCRRARGEGETADDGGAVPLVQNIS
RVE*
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mRNA from alignment at NODE_849_length_17037_cov_4.361560:8265..10243-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1720.t2 ID=Gcaud1720.t2|Name=Gcaud1720.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1979bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:8265..10243- (Gracilaria caudata M_176_S67 male)
ATGAGCACCATTGAACAGCTTTTCTATTTCTTTTACACGTAGTACAAGAT
TTACCAATGATAATGTATACTCGGGTTTTTTGTGAAGTGTTGAAGATTGT
GCGTGAACAGTTTACGCCGTGAACGCCGTCTTCTGCGCAAACAGGCTTGC
GAAAGATGCGAGTTGTACGAAGGGTACCTATCTAACCGTACTAATCATCC
CCACGGTGAGAAGATTCGAAGGCACAAGTTCTTGTTGTGCTTAGGGCGCA
CGATCGCTCTCATACATTCTGCGCGACCAAAATTTTACTGACGTGCAGTT
GAGTATGAAAGACACACACCACCTCGCTCACCGTCATAAAGATATCGTTG
CACAAACCCTGTGAAGCAGAAGTACAAAACTGTGTAACCTTGAATCATGG
GTATGTTCTATTCATAACGTTTTTCAAACATCTCCGATTACGGATCAAGA
GGGCAAATAAGTACATTCGATGTTGCAATCGAGCTCCACATCGTCGGTAT
ATCAAGCGCAGGCTTATTAGCCCACCGACTTTCACAAACCGCTCGTTCTG
GGTGGCGCAGTGATTCTCCGTATCGGTGGGTCAGTCGCCTGCGAACAGAA
CTCACCCTTAACTTCACAAGCAAAAGTCTGACCACGCCTTTAAAGTTGCA
AGCAGTCTGGTTCGCGGTTGTCGAGATATCTTAGGTCGTACAGCCTCACA
TCGAAGGCACCTTGTAAACTCCTTTGCAGCGCTATGTTCCGTCTACAACT
TTCACGAAATTGAAACTCCTATCCTTGAACGTGCCAACCTCTTCTCGCAA
TCGCTCGGAACCGGCTCCGAGGTGATCTCATCTGAAATGTACCATATCGC
GGAAACAAACCCTGCGCTCGCGCTTCGCCCGGAAGGAACTGCAGGTGTGG
CTCGTGCTTTGAAGGACGTTGGCTTGCTCAAATGTGCCCCCGTTTATGGA
ACGCGTGTGTGGTACGCCGGCCCAATGTTTCGCCATGAGAGACCCCAAAA
AGGTCGCTACCGCCAATTTTGGCAGATGGGAGTTGAAGCTGTAGGTGATG
ATTCCGTGTCTACAGATTTGGATACCATTGGTTTGGCTGCACAATACCTC
AGCTCCATTCAATGCAACACCAAACTTCGACTAAACACGCTTGGAAACAA
AGACACACGGAAGGCGTATAACGACGCTCTGAAGCAATTTTTGAAGAGTC
GATACTGGGCATTGTCCTCATTAAGTCGTGGCCGGTATGACAGCGGTAAC
TGCATGCGTATTTTGGACAGCAAGCTTCCAGAAGACTCTGATGTCATGTC
TACAGCGCCGCAGTTACGCGACTTTGTCGATGAAGTTGAAAAAGAGCGCT
TCAAAGAGGTATGTAGTCTACTGGAGGAAGCGCGGATTCCGTTCTTGATA
GACGATCGATTGGTCCGAGGCCTTGAATATTACACAAGTACAGCATTTGA
ATTTCTTGGACCGGGGGGAAAGGCTGTTTGTGGGGGTGGGAGATATACAA
ACGTGTGCGGTGCTAGTGGTATTGGATTTGCTATCGGACTGGATCGCATC
GAGAGCGAGCAATGTGAGGGAATAGCATCGTATGACCGCAACCTTGAAAA
CGGTGTGGTCGTGATCGGACTCTCCAGAACTGCAGAACGAAGCGATTGCG
AAATTGGGAGAACGGCAAGAAGAGTGGTGAAAGAGTTCAGAGACAGGGGT
ATTAAATGTGTAGGTAGATTAGAAGGAGGGAGGTTATCAAAGATGGTGGG
ACGCGCAGCCCGATCAGGCGCAATGGCAGTAGTAGTGCTTGGAGAACAGG
ACTTGGATCAAGCAACGGCACGGGTGAAGTTTGTAAGCGCCGACTGTGAA
CAAGATCCACAGCAAAAGAGTCTGGTAGACGTAGTAGATGTCGTGTGCAG
GCGTGCCCGTGGTGAAGGTGAAACCGCAGATGACGGTGGTGCGGTACCTT
TGGTACAAAACATTAGTCGAGTGGAGTAA
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Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:8265..10243-

>Gcaud1720.t2 ID=Gcaud1720.t2|Name=Gcaud1720.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1512bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:8265..10243- (Gracilaria caudata M_176_S67 male)
ATGAGCACCATTGAACAGCTTTTCTATTTCTTTTACACGCTTGCGAAAGA
TGCGAGTTGTACGAAGGGTACCTATCTAACCGTACTAATCATCCCCACGA
CACACACCACCTCGCTCACCGTCATAAAGATATCGTTGCACAAACCCTGT
GAAGCAGAAGTACAAAACTGTGTAACCTTGAATCATGGTCTGGTTCGCGG
TTGTCGAGATATCTTAGGTCGTACAGCCTCACATCGAAGGCACCTTGTAA
ACTCCTTTGCAGCGCTATGTTCCGTCTACAACTTTCACGAAATTGAAACT
CCTATCCTTGAACGTGCCAACCTCTTCTCGCAATCGCTCGGAACCGGCTC
CGAGGTGATCTCATCTGAAATGTACCATATCGCGGAAACAAACCCTGCGC
TCGCGCTTCGCCCGGAAGGAACTGCAGGTGTGGCTCGTGCTTTGAAGGAC
GTTGGCTTGCTCAAATGTGCCCCCGTTTATGGAACGCGTGTGTGGTACGC
CGGCCCAATGTTTCGCCATGAGAGACCCCAAAAAGGTCGCTACCGCCAAT
TTTGGCAGATGGGAGTTGAAGCTGTAGGTGATGATTCCGTGTCTACAGAT
TTGGATACCATTGGTTTGGCTGCACAATACCTCAGCTCCATTCAATGCAA
CACCAAACTTCGACTAAACACGCTTGGAAACAAAGACACACGGAAGGCGT
ATAACGACGCTCTGAAGCAATTTTTGAAGAGTCGATACTGGGCATTGTCC
TCATTAAGTCGTGGCCGGTATGACAGCGGTAACTGCATGCGTATTTTGGA
CAGCAAGCTTCCAGAAGACTCTGATGTCATGTCTACAGCGCCGCAGTTAC
GCGACTTTGTCGATGAAGTTGAAAAAGAGCGCTTCAAAGAGGTATGTAGT
CTACTGGAGGAAGCGCGGATTCCGTTCTTGATAGACGATCGATTGGTCCG
AGGCCTTGAATATTACACAAGTACAGCATTTGAATTTCTTGGACCGGGGG
GAAAGGCTGTTTGTGGGGGTGGGAGATATACAAACGTGTGCGGTGCTAGT
GGTATTGGATTTGCTATCGGACTGGATCGCATCGAGAGCGAGCAATGTGA
GGGAATAGCATCGTATGACCGCAACCTTGAAAACGGTGTGGTCGTGATCG
GACTCTCCAGAACTGCAGAACGAAGCGATTGCGAAATTGGGAGAACGGCA
AGAAGAGTGGTGAAAGAGTTCAGAGACAGGGGTATTAAATGTGTAGGTAG
ATTAGAAGGAGGGAGGTTATCAAAGATGGTGGGACGCGCAGCCCGATCAG
GCGCAATGGCAGTAGTAGTGCTTGGAGAACAGGACTTGGATCAAGCAACG
GCACGGGTGAAGTTTGTAAGCGCCGACTGTGAACAAGATCCACAGCAAAA
GAGTCTGGTAGACGTAGTAGATGTCGTGTGCAGGCGTGCCCGTGGTGAAG
GTGAAACCGCAGATGACGGTGGTGCGGTACCTTTGGTACAAAACATTAGT
CGAGTGGAGTAA
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