Gcaud1720.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1720.t1
Unique NameGcaud1720.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_849_length_17037_cov_4.361560contigNODE_849_length_17037_cov_4.361560:8265..9847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog323850.Shew_1291
Preferred namehisS
PFAMsHGTP_anticodon,tRNA-synt_His
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00055,RC00523
KEGG koko:K01892
KEGG ReactionR03655
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004821,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue5.07e-65
EggNOG OGsCOG0124@1|root,COG0124@2|Bacteria,1MV2K@1224|Proteobacteria,1RPHI@1236|Gammaproteobacteria,2Q8TK@267890|Shewanellaceae
EC6.1.1.21
DescriptionPFAM tRNA synthetase class II (G H P and S)
COG categoryJ
BiGG ReactioniE2348C_1286.E2348C_2797,iECNA114_1301.ECNA114_2592,iECSF_1327.ECSF_2358
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1720Gcaud1720Gracilaria caudata M_176_S67 malegeneNODE_849_length_17037_cov_4.361560 8265..10243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t1Gcaud1720.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_849_length_17037_cov_4.361560 8265..9847 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t1.stop1Gcaud1720.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_849_length_17037_cov_4.361560 8265..8267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t1.CDS1Gcaud1720.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 8265..9598 -
Gcaud1720.t1.CDS2Gcaud1720.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 9844..9847 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t1.exon1Gcaud1720.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 8265..9598 -
Gcaud1720.t1.exon2Gcaud1720.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 9844..9847 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t1.intron1Gcaud1720.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_849_length_17037_cov_4.361560 9599..9843 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1720.t1.start1Gcaud1720.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_849_length_17037_cov_4.361560 9845..9847 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1720.t1 ID=Gcaud1720.t1|Name=Gcaud1720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=446bp
MVASSLVRGCRDILGRTASHRRHLVNSFAALCSVYNFHEIETPILERANL
FSQSLGTGSEVISSEMYHIAETNPALALRPEGTAGVARALKDVGLLKCAP
VYGTRVWYAGPMFRHERPQKGRYRQFWQMGVEAVGDDSVSTDLDTIGLAA
QYLSSIQCNTKLRLNTLGNKDTRKAYNDALKQFLKSRYWALSSLSRGRYD
SGNCMRILDSKLPEDSDVMSTAPQLRDFVDEVEKERFKEVCSLLEEARIP
FLIDDRLVRGLEYYTSTAFEFLGPGGKAVCGGGRYTNVCGASGIGFAIGL
DRIESEQCEGIASYDRNLENGVVVIGLSRTAERSDCEIGRTARRVVKEFR
DRGIKCVGRLEGGRLSKMVGRAARSGAMAVVVLGEQDLDQATARVKFVSA
DCEQDPQQKSLVDVVDVVCRRARGEGETADDGGAVPLVQNISRVE*
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spliced messenger RNA

>Gcaud1720.t1 ID=Gcaud1720.t1|Name=Gcaud1720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:8265..9847- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCAAGCAGTCTGGTTCGCGGTTGTCGAGATATCTTAGGTCGTAC
AGCCTCACATCGAAGGCACCTTGTAAACTCCTTTGCAGCGCTATGTTCCG
TCTACAACTTTCACGAAATTGAAACTCCTATCCTTGAACGTGCCAACCTC
TTCTCGCAATCGCTCGGAACCGGCTCCGAGGTGATCTCATCTGAAATGTA
CCATATCGCGGAAACAAACCCTGCGCTCGCGCTTCGCCCGGAAGGAACTG
CAGGTGTGGCTCGTGCTTTGAAGGACGTTGGCTTGCTCAAATGTGCCCCC
GTTTATGGAACGCGTGTGTGGTACGCCGGCCCAATGTTTCGCCATGAGAG
ACCCCAAAAAGGTCGCTACCGCCAATTTTGGCAGATGGGAGTTGAAGCTG
TAGGTGATGATTCCGTGTCTACAGATTTGGATACCATTGGTTTGGCTGCA
CAATACCTCAGCTCCATTCAATGCAACACCAAACTTCGACTAAACACGCT
TGGAAACAAAGACACACGGAAGGCGTATAACGACGCTCTGAAGCAATTTT
TGAAGAGTCGATACTGGGCATTGTCCTCATTAAGTCGTGGCCGGTATGAC
AGCGGTAACTGCATGCGTATTTTGGACAGCAAGCTTCCAGAAGACTCTGA
TGTCATGTCTACAGCGCCGCAGTTACGCGACTTTGTCGATGAAGTTGAAA
AAGAGCGCTTCAAAGAGGTATGTAGTCTACTGGAGGAAGCGCGGATTCCG
TTCTTGATAGACGATCGATTGGTCCGAGGCCTTGAATATTACACAAGTAC
AGCATTTGAATTTCTTGGACCGGGGGGAAAGGCTGTTTGTGGGGGTGGGA
GATATACAAACGTGTGCGGTGCTAGTGGTATTGGATTTGCTATCGGACTG
GATCGCATCGAGAGCGAGCAATGTGAGGGAATAGCATCGTATGACCGCAA
CCTTGAAAACGGTGTGGTCGTGATCGGACTCTCCAGAACTGCAGAACGAA
GCGATTGCGAAATTGGGAGAACGGCAAGAAGAGTGGTGAAAGAGTTCAGA
GACAGGGGTATTAAATGTGTAGGTAGATTAGAAGGAGGGAGGTTATCAAA
GATGGTGGGACGCGCAGCCCGATCAGGCGCAATGGCAGTAGTAGTGCTTG
GAGAACAGGACTTGGATCAAGCAACGGCACGGGTGAAGTTTGTAAGCGCC
GACTGTGAACAAGATCCACAGCAAAAGAGTCTGGTAGACGTAGTAGATGT
CGTGTGCAGGCGTGCCCGTGGTGAAGGTGAAACCGCAGATGACGGTGGTG
CGGTACCTTTGGTACAAAACATTAGTCGAGTGGAGTAA
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protein sequence of Gcaud1720.t1

>Gcaud1720.t1 ID=Gcaud1720.t1|Name=Gcaud1720.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=446bp
MVASSLVRGCRDILGRTASHRRHLVNSFAALCSVYNFHEIETPILERANL
FSQSLGTGSEVISSEMYHIAETNPALALRPEGTAGVARALKDVGLLKCAP
VYGTRVWYAGPMFRHERPQKGRYRQFWQMGVEAVGDDSVSTDLDTIGLAA
QYLSSIQCNTKLRLNTLGNKDTRKAYNDALKQFLKSRYWALSSLSRGRYD
SGNCMRILDSKLPEDSDVMSTAPQLRDFVDEVEKERFKEVCSLLEEARIP
FLIDDRLVRGLEYYTSTAFEFLGPGGKAVCGGGRYTNVCGASGIGFAIGL
DRIESEQCEGIASYDRNLENGVVVIGLSRTAERSDCEIGRTARRVVKEFR
DRGIKCVGRLEGGRLSKMVGRAARSGAMAVVVLGEQDLDQATARVKFVSA
DCEQDPQQKSLVDVVDVVCRRARGEGETADDGGAVPLVQNISRVE*
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mRNA from alignment at NODE_849_length_17037_cov_4.361560:8265..9847-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1720.t1 ID=Gcaud1720.t1|Name=Gcaud1720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1583bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:8265..9847- (Gracilaria caudata M_176_S67 male)
ATGGGTATGTTCTATTCATAACGTTTTTCAAACATCTCCGATTACGGATC
AAGAGGGCAAATAAGTACATTCGATGTTGCAATCGAGCTCCACATCGTCG
GTATATCAAGCGCAGGCTTATTAGCCCACCGACTTTCACAAACCGCTCGT
TCTGGGTGGCGCAGTGATTCTCCGTATCGGTGGGTCAGTCGCCTGCGAAC
AGAACTCACCCTTAACTTCACAAGCAAAAGTCTGACCACGCCTTTAAAGT
TGCAAGCAGTCTGGTTCGCGGTTGTCGAGATATCTTAGGTCGTACAGCCT
CACATCGAAGGCACCTTGTAAACTCCTTTGCAGCGCTATGTTCCGTCTAC
AACTTTCACGAAATTGAAACTCCTATCCTTGAACGTGCCAACCTCTTCTC
GCAATCGCTCGGAACCGGCTCCGAGGTGATCTCATCTGAAATGTACCATA
TCGCGGAAACAAACCCTGCGCTCGCGCTTCGCCCGGAAGGAACTGCAGGT
GTGGCTCGTGCTTTGAAGGACGTTGGCTTGCTCAAATGTGCCCCCGTTTA
TGGAACGCGTGTGTGGTACGCCGGCCCAATGTTTCGCCATGAGAGACCCC
AAAAAGGTCGCTACCGCCAATTTTGGCAGATGGGAGTTGAAGCTGTAGGT
GATGATTCCGTGTCTACAGATTTGGATACCATTGGTTTGGCTGCACAATA
CCTCAGCTCCATTCAATGCAACACCAAACTTCGACTAAACACGCTTGGAA
ACAAAGACACACGGAAGGCGTATAACGACGCTCTGAAGCAATTTTTGAAG
AGTCGATACTGGGCATTGTCCTCATTAAGTCGTGGCCGGTATGACAGCGG
TAACTGCATGCGTATTTTGGACAGCAAGCTTCCAGAAGACTCTGATGTCA
TGTCTACAGCGCCGCAGTTACGCGACTTTGTCGATGAAGTTGAAAAAGAG
CGCTTCAAAGAGGTATGTAGTCTACTGGAGGAAGCGCGGATTCCGTTCTT
GATAGACGATCGATTGGTCCGAGGCCTTGAATATTACACAAGTACAGCAT
TTGAATTTCTTGGACCGGGGGGAAAGGCTGTTTGTGGGGGTGGGAGATAT
ACAAACGTGTGCGGTGCTAGTGGTATTGGATTTGCTATCGGACTGGATCG
CATCGAGAGCGAGCAATGTGAGGGAATAGCATCGTATGACCGCAACCTTG
AAAACGGTGTGGTCGTGATCGGACTCTCCAGAACTGCAGAACGAAGCGAT
TGCGAAATTGGGAGAACGGCAAGAAGAGTGGTGAAAGAGTTCAGAGACAG
GGGTATTAAATGTGTAGGTAGATTAGAAGGAGGGAGGTTATCAAAGATGG
TGGGACGCGCAGCCCGATCAGGCGCAATGGCAGTAGTAGTGCTTGGAGAA
CAGGACTTGGATCAAGCAACGGCACGGGTGAAGTTTGTAAGCGCCGACTG
TGAACAAGATCCACAGCAAAAGAGTCTGGTAGACGTAGTAGATGTCGTGT
GCAGGCGTGCCCGTGGTGAAGGTGAAACCGCAGATGACGGTGGTGCGGTA
CCTTTGGTACAAAACATTAGTCGAGTGGAGTAA
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Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:8265..9847-

>Gcaud1720.t1 ID=Gcaud1720.t1|Name=Gcaud1720.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1338bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:8265..9847- (Gracilaria caudata M_176_S67 male)
ATGGTTGCAAGCAGTCTGGTTCGCGGTTGTCGAGATATCTTAGGTCGTAC
AGCCTCACATCGAAGGCACCTTGTAAACTCCTTTGCAGCGCTATGTTCCG
TCTACAACTTTCACGAAATTGAAACTCCTATCCTTGAACGTGCCAACCTC
TTCTCGCAATCGCTCGGAACCGGCTCCGAGGTGATCTCATCTGAAATGTA
CCATATCGCGGAAACAAACCCTGCGCTCGCGCTTCGCCCGGAAGGAACTG
CAGGTGTGGCTCGTGCTTTGAAGGACGTTGGCTTGCTCAAATGTGCCCCC
GTTTATGGAACGCGTGTGTGGTACGCCGGCCCAATGTTTCGCCATGAGAG
ACCCCAAAAAGGTCGCTACCGCCAATTTTGGCAGATGGGAGTTGAAGCTG
TAGGTGATGATTCCGTGTCTACAGATTTGGATACCATTGGTTTGGCTGCA
CAATACCTCAGCTCCATTCAATGCAACACCAAACTTCGACTAAACACGCT
TGGAAACAAAGACACACGGAAGGCGTATAACGACGCTCTGAAGCAATTTT
TGAAGAGTCGATACTGGGCATTGTCCTCATTAAGTCGTGGCCGGTATGAC
AGCGGTAACTGCATGCGTATTTTGGACAGCAAGCTTCCAGAAGACTCTGA
TGTCATGTCTACAGCGCCGCAGTTACGCGACTTTGTCGATGAAGTTGAAA
AAGAGCGCTTCAAAGAGGTATGTAGTCTACTGGAGGAAGCGCGGATTCCG
TTCTTGATAGACGATCGATTGGTCCGAGGCCTTGAATATTACACAAGTAC
AGCATTTGAATTTCTTGGACCGGGGGGAAAGGCTGTTTGTGGGGGTGGGA
GATATACAAACGTGTGCGGTGCTAGTGGTATTGGATTTGCTATCGGACTG
GATCGCATCGAGAGCGAGCAATGTGAGGGAATAGCATCGTATGACCGCAA
CCTTGAAAACGGTGTGGTCGTGATCGGACTCTCCAGAACTGCAGAACGAA
GCGATTGCGAAATTGGGAGAACGGCAAGAAGAGTGGTGAAAGAGTTCAGA
GACAGGGGTATTAAATGTGTAGGTAGATTAGAAGGAGGGAGGTTATCAAA
GATGGTGGGACGCGCAGCCCGATCAGGCGCAATGGCAGTAGTAGTGCTTG
GAGAACAGGACTTGGATCAAGCAACGGCACGGGTGAAGTTTGTAAGCGCC
GACTGTGAACAAGATCCACAGCAAAAGAGTCTGGTAGACGTAGTAGATGT
CGTGTGCAGGCGTGCCCGTGGTGAAGGTGAAACCGCAGATGACGGTGGTG
CGGTACCTTTGGTACAAAACATTAGTCGAGTGGAGTAA
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