Gcaud1716.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1716.t1
Unique Name	Gcaud1716.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_849_length_17037_cov_4.361560	contig	NODE_849_length_17037_cov_4.361560:2..1195 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1716	Gcaud1716	Gracilaria caudata M_176_S67 male	gene	NODE_849_length_17037_cov_4.361560 2..1195 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1716.t1.CDS1	Gcaud1716.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_849_length_17037_cov_4.361560 2..1195 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1716.t1.exon1	Gcaud1716.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_849_length_17037_cov_4.361560 2..1195 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1716.t1.start1	Gcaud1716.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_849_length_17037_cov_4.361560 1193..1195 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1716.t1	Gcaud1716.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_849_length_17037_cov_4.361560 2..1195 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_849_length_17037_cov_4.361560:2..1195-
coding sequence from alignment at NODE_849_length_17037_cov_4.361560:2..1195-

mRNA sequence

>Gcaud1716.t1 ID=Gcaud1716.t1|Name=Gcaud1716.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MAEVGIFLLEALVGVVLDRVFNKNDTTALIDEVKNLQSTVVGLQHQVLAL
ERVIRQFTDKVPDEVVRFRRVREKTHFHLRDFDPTLIDFATELVASLLNG
LALGFQLKVHATKKALNRGRAFEARDFEVVLGAGKTVDGNISLLKGLFND
LTQWVCGQEVSRLEKPTITLNMVCGSTTEFKALELMRYRISLRLNILNTL
ALNWSTSCLGTLKLNGVLFGDSGRCMHKFVNNTQMDSNVQVQSFPRVFWS
NEYKQLTDVLRTTVKDSVSCFRVLILSFDNWITSDAAEYHGFSSKIRTFV
SGRAVRCVEVKLKDYSHWDHINLEQILFWGLSMSVVVFRFSTPEHLALML
EASTQITLKYPNLTEDVQRVLYVETSSTDNVGDVRQNIKDVAVRKRML

spliced messenger RNA

>Gcaud1716.t1 ID=Gcaud1716.t1|Name=Gcaud1716.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:2..1195- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGGTTGGCATTTTCTTGTTGGAAGCGCTTGTCGGCGTGGTTCT
CGATCGAGTTTTCAACAAAAATGACACTACAGCTCTCATCGATGAAGTCA
AAAACCTACAAAGCACTGTCGTAGGTTTACAACACCAAGTTTTGGCTCTG
GAGAGGGTCATCAGACAATTCACGGACAAAGTACCAGACGAGGTAGTTCG
TTTTCGTAGAGTTCGAGAAAAGACTCACTTTCATTTGAGGGATTTTGATC
CCACGCTAATCGACTTTGCTACGGAACTCGTGGCATCATTGCTCAACGGT
CTCGCTTTAGGATTTCAGCTCAAAGTTCACGCAACAAAGAAGGCCCTTAA
TCGAGGAAGGGCTTTCGAGGCACGCGACTTTGAAGTGGTGCTGGGAGCAG
GCAAAACTGTAGATGGCAACATTTCGCTTCTCAAAGGCCTTTTCAATGAT
TTGACTCAGTGGGTATGCGGTCAAGAAGTGTCCCGACTTGAGAAGCCAAC
GATTACATTGAACATGGTATGTGGAAGCACTACTGAGTTCAAAGCTCTCG
AGCTCATGAGGTATCGAATTTCATTACGATTGAACATACTCAATACCTTG
GCTTTAAATTGGAGTACTTCATGTTTGGGTACGCTCAAGCTTAACGGTGT
ACTTTTCGGTGACAGTGGCAGATGCATGCATAAGTTTGTCAACAACACCC
AAATGGATTCTAACGTTCAAGTACAAAGCTTTCCTCGTGTATTCTGGTCA
AATGAGTACAAACAGCTTACAGATGTGCTGAGGACCACTGTTAAGGATTC
AGTGTCGTGTTTCCGAGTGCTTATTCTGTCCTTCGATAACTGGATCACCA
GCGATGCAGCGGAGTATCACGGTTTCTCGTCTAAGATACGAACTTTTGTT
TCAGGAAGAGCTGTTCGATGTGTAGAAGTAAAACTGAAGGACTACTCTCA
TTGGGATCACATTAACCTTGAACAGATTCTTTTCTGGGGCCTGTCAATGA
GCGTGGTTGTTTTCCGATTTTCCACTCCAGAACATCTGGCTCTCATGCTA
GAGGCAAGCACGCAGATTACCCTAAAGTATCCCAACCTAACAGAGGACGT
GCAACGTGTGTTGTATGTGGAGACTTCGTCGACAGACAATGTGGGTGATG
TACGACAAAATATTAAGGACGTTGCTGTGAGGAAACGTATGTTA

protein sequence of Gcaud1716.t1

>Gcaud1716.t1 ID=Gcaud1716.t1|Name=Gcaud1716.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MAEVGIFLLEALVGVVLDRVFNKNDTTALIDEVKNLQSTVVGLQHQVLAL
ERVIRQFTDKVPDEVVRFRRVREKTHFHLRDFDPTLIDFATELVASLLNG
LALGFQLKVHATKKALNRGRAFEARDFEVVLGAGKTVDGNISLLKGLFND
LTQWVCGQEVSRLEKPTITLNMVCGSTTEFKALELMRYRISLRLNILNTL
ALNWSTSCLGTLKLNGVLFGDSGRCMHKFVNNTQMDSNVQVQSFPRVFWS
NEYKQLTDVLRTTVKDSVSCFRVLILSFDNWITSDAAEYHGFSSKIRTFV
SGRAVRCVEVKLKDYSHWDHINLEQILFWGLSMSVVVFRFSTPEHLALML
EASTQITLKYPNLTEDVQRVLYVETSSTDNVGDVRQNIKDVAVRKRML

mRNA from alignment at NODE_849_length_17037_cov_4.361560:2..1195-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1716.t1 ID=Gcaud1716.t1|Name=Gcaud1716.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:2..1195- (Gracilaria caudata M_176_S67 male)
ATGGCTGAGGTTGGCATTTTCTTGTTGGAAGCGCTTGTCGGCGTGGTTCT
CGATCGAGTTTTCAACAAAAATGACACTACAGCTCTCATCGATGAAGTCA
AAAACCTACAAAGCACTGTCGTAGGTTTACAACACCAAGTTTTGGCTCTG
GAGAGGGTCATCAGACAATTCACGGACAAAGTACCAGACGAGGTAGTTCG
TTTTCGTAGAGTTCGAGAAAAGACTCACTTTCATTTGAGGGATTTTGATC
CCACGCTAATCGACTTTGCTACGGAACTCGTGGCATCATTGCTCAACGGT
CTCGCTTTAGGATTTCAGCTCAAAGTTCACGCAACAAAGAAGGCCCTTAA
TCGAGGAAGGGCTTTCGAGGCACGCGACTTTGAAGTGGTGCTGGGAGCAG
GCAAAACTGTAGATGGCAACATTTCGCTTCTCAAAGGCCTTTTCAATGAT
TTGACTCAGTGGGTATGCGGTCAAGAAGTGTCCCGACTTGAGAAGCCAAC
GATTACATTGAACATGGTATGTGGAAGCACTACTGAGTTCAAAGCTCTCG
AGCTCATGAGGTATCGAATTTCATTACGATTGAACATACTCAATACCTTG
GCTTTAAATTGGAGTACTTCATGTTTGGGTACGCTCAAGCTTAACGGTGT
ACTTTTCGGTGACAGTGGCAGATGCATGCATAAGTTTGTCAACAACACCC
AAATGGATTCTAACGTTCAAGTACAAAGCTTTCCTCGTGTATTCTGGTCA
AATGAGTACAAACAGCTTACAGATGTGCTGAGGACCACTGTTAAGGATTC
AGTGTCGTGTTTCCGAGTGCTTATTCTGTCCTTCGATAACTGGATCACCA
GCGATGCAGCGGAGTATCACGGTTTCTCGTCTAAGATACGAACTTTTGTT
TCAGGAAGAGCTGTTCGATGTGTAGAAGTAAAACTGAAGGACTACTCTCA
TTGGGATCACATTAACCTTGAACAGATTCTTTTCTGGGGCCTGTCAATGA
GCGTGGTTGTTTTCCGATTTTCCACTCCAGAACATCTGGCTCTCATGCTA
GAGGCAAGCACGCAGATTACCCTAAAGTATCCCAACCTAACAGAGGACGT
GCAACGTGTGTTGTATGTGGAGACTTCGTCGACAGACAATGTGGGTGATG
TACGACAAAATATTAAGGACGTTGCTGTGAGGAAACGTATGTTA

Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:2..1195-

>Gcaud1716.t1 ID=Gcaud1716.t1|Name=Gcaud1716.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:2..1195- (Gracilaria caudata M_176_S67 male)
ATGGCTGAGGTTGGCATTTTCTTGTTGGAAGCGCTTGTCGGCGTGGTTCT
CGATCGAGTTTTCAACAAAAATGACACTACAGCTCTCATCGATGAAGTCA
AAAACCTACAAAGCACTGTCGTAGGTTTACAACACCAAGTTTTGGCTCTG
GAGAGGGTCATCAGACAATTCACGGACAAAGTACCAGACGAGGTAGTTCG
TTTTCGTAGAGTTCGAGAAAAGACTCACTTTCATTTGAGGGATTTTGATC
CCACGCTAATCGACTTTGCTACGGAACTCGTGGCATCATTGCTCAACGGT
CTCGCTTTAGGATTTCAGCTCAAAGTTCACGCAACAAAGAAGGCCCTTAA
TCGAGGAAGGGCTTTCGAGGCACGCGACTTTGAAGTGGTGCTGGGAGCAG
GCAAAACTGTAGATGGCAACATTTCGCTTCTCAAAGGCCTTTTCAATGAT
TTGACTCAGTGGGTATGCGGTCAAGAAGTGTCCCGACTTGAGAAGCCAAC
GATTACATTGAACATGGTATGTGGAAGCACTACTGAGTTCAAAGCTCTCG
AGCTCATGAGGTATCGAATTTCATTACGATTGAACATACTCAATACCTTG
GCTTTAAATTGGAGTACTTCATGTTTGGGTACGCTCAAGCTTAACGGTGT
ACTTTTCGGTGACAGTGGCAGATGCATGCATAAGTTTGTCAACAACACCC
AAATGGATTCTAACGTTCAAGTACAAAGCTTTCCTCGTGTATTCTGGTCA
AATGAGTACAAACAGCTTACAGATGTGCTGAGGACCACTGTTAAGGATTC
AGTGTCGTGTTTCCGAGTGCTTATTCTGTCCTTCGATAACTGGATCACCA
GCGATGCAGCGGAGTATCACGGTTTCTCGTCTAAGATACGAACTTTTGTT
TCAGGAAGAGCTGTTCGATGTGTAGAAGTAAAACTGAAGGACTACTCTCA
TTGGGATCACATTAACCTTGAACAGATTCTTTTCTGGGGCCTGTCAATGA
GCGTGGTTGTTTTCCGATTTTCCACTCCAGAACATCTGGCTCTCATGCTA
GAGGCAAGCACGCAGATTACCCTAAAGTATCCCAACCTAACAGAGGACGT
GCAACGTGTGTTGTATGTGGAGACTTCGTCGACAGACAATGTGGGTGATG
TACGACAAAATATTAAGGACGTTGCTGTGAGGAAACGTATGTTA