Gcaud1722.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1722.t1
Unique NameGcaud1722.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_849_length_17037_cov_4.361560contigNODE_849_length_17037_cov_4.361560:13801..14511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003295138.1
PFAMsSARAF
Max annot lvl554915|Amoebozoa
Evalue1.46e-18
EggNOG OGs28KQW@1|root,2QT6Y@2759|Eukaryota,3XDZI@554915|Amoebozoa
DescriptionSOCE-associated regulatory factor of calcium homoeostasis
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1722Gcaud1722Gracilaria caudata M_176_S67 malegeneNODE_849_length_17037_cov_4.361560 13801..14511 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1722.t1.start1Gcaud1722.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_849_length_17037_cov_4.361560 13801..13803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1722.t1.CDS1Gcaud1722.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 13801..14511 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1722.t1.exon1Gcaud1722.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 13801..14511 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1722.t1.stop1Gcaud1722.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_849_length_17037_cov_4.361560 14509..14511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1722.t1Gcaud1722.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_849_length_17037_cov_4.361560 13801..14511 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1722.t1 ID=Gcaud1722.t1|Name=Gcaud1722.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp
MSLSKAAIQASMKFSPLLAISLFLSLAPTLLASDVERAGNAFGGSSVNPD
RIYLPGLVKLSFVANTYTTPRRTVPRPQLTCIGGDASDRSDLYPLRVDCY
NAGVDPDADGNPMPKWECVGAVDRSVLVDDWSVHCEGWSFEGDLYIVKGS
CWLEYKLSFSRDGPPPSAMGNVANSGSATRGTSIVRWFLHLLGKFALLVV
VVCAVVFCLCRDEAPPSAEREPLVNTQQSYAATSET*
back to top

spliced messenger RNA

>Gcaud1722.t1 ID=Gcaud1722.t1|Name=Gcaud1722.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:13801..14511+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTCTCAAAGGCTGCCATCCAAGCCAGCATGAAATTCTCACCTCT
TCTGGCCATTTCCCTTTTTCTATCATTGGCCCCCACACTGTTAGCGTCTG
ACGTTGAGCGCGCTGGCAACGCCTTCGGTGGCTCTTCTGTCAATCCCGAC
CGTATATACTTACCTGGTCTGGTGAAGCTCTCATTCGTCGCGAACACATA
CACTACTCCTCGTCGAACAGTGCCGCGCCCGCAACTCACATGTATTGGAG
GAGATGCGAGCGATCGATCTGACCTATATCCATTGCGCGTGGACTGCTAC
AATGCCGGTGTAGATCCTGATGCGGACGGAAACCCAATGCCGAAATGGGA
ATGTGTTGGCGCCGTCGACAGAAGCGTGCTTGTTGATGACTGGTCCGTGC
ATTGCGAAGGGTGGAGCTTTGAGGGGGATCTTTACATTGTCAAGGGAAGT
TGTTGGCTGGAGTACAAGCTGTCGTTTTCACGTGATGGCCCTCCACCATC
TGCGATGGGTAACGTCGCAAACAGCGGAAGCGCAACCAGGGGAACGAGTA
TAGTGCGATGGTTCTTGCACTTGCTAGGGAAATTCGCACTTCTCGTGGTC
GTCGTCTGCGCAGTCGTCTTTTGCTTGTGTCGCGACGAAGCCCCACCTTC
TGCGGAACGAGAGCCGCTTGTCAACACTCAACAGAGCTATGCCGCCACCT
CCGAAACATGA
back to top

protein sequence of Gcaud1722.t1

>Gcaud1722.t1 ID=Gcaud1722.t1|Name=Gcaud1722.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=237bp
MSLSKAAIQASMKFSPLLAISLFLSLAPTLLASDVERAGNAFGGSSVNPD
RIYLPGLVKLSFVANTYTTPRRTVPRPQLTCIGGDASDRSDLYPLRVDCY
NAGVDPDADGNPMPKWECVGAVDRSVLVDDWSVHCEGWSFEGDLYIVKGS
CWLEYKLSFSRDGPPPSAMGNVANSGSATRGTSIVRWFLHLLGKFALLVV
VVCAVVFCLCRDEAPPSAEREPLVNTQQSYAATSET*
back to top

mRNA from alignment at NODE_849_length_17037_cov_4.361560:13801..14511+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1722.t1 ID=Gcaud1722.t1|Name=Gcaud1722.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:13801..14511+ (Gracilaria caudata M_176_S67 male)
ATGAGCCTCTCAAAGGCTGCCATCCAAGCCAGCATGAAATTCTCACCTCT
TCTGGCCATTTCCCTTTTTCTATCATTGGCCCCCACACTGTTAGCGTCTG
ACGTTGAGCGCGCTGGCAACGCCTTCGGTGGCTCTTCTGTCAATCCCGAC
CGTATATACTTACCTGGTCTGGTGAAGCTCTCATTCGTCGCGAACACATA
CACTACTCCTCGTCGAACAGTGCCGCGCCCGCAACTCACATGTATTGGAG
GAGATGCGAGCGATCGATCTGACCTATATCCATTGCGCGTGGACTGCTAC
AATGCCGGTGTAGATCCTGATGCGGACGGAAACCCAATGCCGAAATGGGA
ATGTGTTGGCGCCGTCGACAGAAGCGTGCTTGTTGATGACTGGTCCGTGC
ATTGCGAAGGGTGGAGCTTTGAGGGGGATCTTTACATTGTCAAGGGAAGT
TGTTGGCTGGAGTACAAGCTGTCGTTTTCACGTGATGGCCCTCCACCATC
TGCGATGGGTAACGTCGCAAACAGCGGAAGCGCAACCAGGGGAACGAGTA
TAGTGCGATGGTTCTTGCACTTGCTAGGGAAATTCGCACTTCTCGTGGTC
GTCGTCTGCGCAGTCGTCTTTTGCTTGTGTCGCGACGAAGCCCCACCTTC
TGCGGAACGAGAGCCGCTTGTCAACACTCAACAGAGCTATGCCGCCACCT
CCGAAACATGA
back to top

Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:13801..14511+

>Gcaud1722.t1 ID=Gcaud1722.t1|Name=Gcaud1722.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=711bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:13801..14511+ (Gracilaria caudata M_176_S67 male)
ATGAGCCTCTCAAAGGCTGCCATCCAAGCCAGCATGAAATTCTCACCTCT
TCTGGCCATTTCCCTTTTTCTATCATTGGCCCCCACACTGTTAGCGTCTG
ACGTTGAGCGCGCTGGCAACGCCTTCGGTGGCTCTTCTGTCAATCCCGAC
CGTATATACTTACCTGGTCTGGTGAAGCTCTCATTCGTCGCGAACACATA
CACTACTCCTCGTCGAACAGTGCCGCGCCCGCAACTCACATGTATTGGAG
GAGATGCGAGCGATCGATCTGACCTATATCCATTGCGCGTGGACTGCTAC
AATGCCGGTGTAGATCCTGATGCGGACGGAAACCCAATGCCGAAATGGGA
ATGTGTTGGCGCCGTCGACAGAAGCGTGCTTGTTGATGACTGGTCCGTGC
ATTGCGAAGGGTGGAGCTTTGAGGGGGATCTTTACATTGTCAAGGGAAGT
TGTTGGCTGGAGTACAAGCTGTCGTTTTCACGTGATGGCCCTCCACCATC
TGCGATGGGTAACGTCGCAAACAGCGGAAGCGCAACCAGGGGAACGAGTA
TAGTGCGATGGTTCTTGCACTTGCTAGGGAAATTCGCACTTCTCGTGGTC
GTCGTCTGCGCAGTCGTCTTTTGCTTGTGTCGCGACGAAGCCCCACCTTC
TGCGGAACGAGAGCCGCTTGTCAACACTCAACAGAGCTATGCCGCCACCT
CCGAAACATGA
back to top