Gcaud1723.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1723.t1
Unique Name	Gcaud1723.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	747

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_849_length_17037_cov_4.361560	contig	NODE_849_length_17037_cov_4.361560:14717..16957 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005648994.1
PFAMs	Kinesin
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K10395
Evalue	8.34e-80
EggNOG OGs	COG5059@1\|root,KOG0244@2759\|Eukaryota,37KZU@33090\|Viridiplantae,34KPW@3041\|Chlorophyta
Description	Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
COG category	Z
BRITE	ko00000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1723	Gcaud1723	Gracilaria caudata M_176_S67 male	gene	NODE_849_length_17037_cov_4.361560 14717..16957 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1723.t1.stop1	Gcaud1723.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_849_length_17037_cov_4.361560 14717..14719 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1723.t1.CDS1	Gcaud1723.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_849_length_17037_cov_4.361560 14717..16957 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1723.t1.exon1	Gcaud1723.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_849_length_17037_cov_4.361560 14717..16957 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1723.t1.start1	Gcaud1723.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_849_length_17037_cov_4.361560 16955..16957 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1723.t1	Gcaud1723.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_849_length_17037_cov_4.361560 14717..16957 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_849_length_17037_cov_4.361560:14717..16957-
coding sequence from alignment at NODE_849_length_17037_cov_4.361560:14717..16957-

mRNA sequence

>Gcaud1723.t1 ID=Gcaud1723.t1|Name=Gcaud1723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp
MSIGARPGATKHATRSEAVRVVINARPLLPFELADNAQCALQHHNNPPRV
SLRRPGAADVHFSQFDAVYAAKHDRKPDALYLQHVRPMLDSLFQGVNVTV
FAYGQTSAGKSFTMAHLTQCVARDVFQLKRAAERARRTVVVRVGFVEIYK
ERIRDLVDANCRPAVPVQVRERRVKGARHVFLDGARERCVQDENALVSII
RDGNDVRRTAATGMNASSSRSHSVITITVQQESEGNECLFSKLHLVDLAG
SERVKRTAAQGARFEEGVQINKGLFALAKVISALADKVAHVPYRDSNLTR
LLQDSLGGNAKTLLIACVSPADSSREETLGTLRYAARAKRIQNKPVVNTE
PDSVEISDLRAALARARAQIASLVAENERLRGRGKRVASPRSPLSHATGM
LNQVRNDESPKRVEATAGRDDVLVNGLKERIAELERVLETAGIVVDRGQQ
SPLRKIRHVGVSSLSTSRENHGRAPKRRPRVMREPSSKAASFDAQSSEKR
EVRVGRTQSEKTLPAARRNFGNRSSPAREEHDVIEPSGYEDELETKVVNV
LSAHRMDEMKRTFAERLQQAEEDKTAIDSARLKLVKRLSSIHKKHERDLE
ELKSAHQTQMMEMRSRLADVKRLEAESVRMCKMRDGSDAARKKLMARVES
AEKSRDEAISRLAGVVSRTETLKRSLSKENRELSKNERMLKVELNRHKIT
SAKQQALVNRLRLENETMRIRLRDIGRQQVRRANSGITPTTTRAQC*

spliced messenger RNA

>Gcaud1723.t1 ID=Gcaud1723.t1|Name=Gcaud1723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2241bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:14717..16957- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTGGCGCGCGCCCCGGCGCGACGAAGCATGCGACGCGGTCGGA
GGCGGTGCGCGTGGTCATCAACGCGCGCCCCCTGCTTCCGTTCGAACTGG
CGGACAATGCGCAGTGCGCGTTGCAACACCACAACAACCCGCCGCGCGTG
TCGCTGCGACGACCCGGCGCGGCCGACGTGCACTTCTCGCAGTTCGACGC
CGTGTACGCCGCCAAGCACGACAGAAAGCCGGACGCGTTGTATCTGCAAC
ACGTGCGTCCCATGCTTGACTCGCTGTTCCAAGGCGTCAATGTGACCGTG
TTTGCGTACGGACAGACGAGCGCGGGCAAGAGTTTTACCATGGCGCACTT
GACGCAGTGCGTGGCGAGGGATGTGTTTCAGTTGAAGAGGGCGGCCGAAC
GCGCGCGACGCACCGTGGTTGTGCGCGTGGGCTTTGTGGAGATTTACAAG
GAGCGAATCCGCGACTTGGTGGACGCCAATTGTAGACCGGCTGTGCCGGT
GCAGGTGAGGGAGAGGCGTGTTAAGGGCGCGAGGCATGTGTTCTTGGACG
GTGCGAGGGAGCGGTGTGTGCAGGATGAAAACGCGCTTGTGTCTATTATT
CGAGATGGCAATGATGTTCGACGAACTGCGGCCACTGGCATGAATGCATC
CTCTTCTAGAAGTCACTCTGTGATCACTATTACCGTGCAGCAGGAGAGTG
AGGGCAATGAATGTTTGTTTTCCAAGCTGCATCTCGTCGATTTGGCGGGC
AGTGAACGCGTCAAGCGCACCGCGGCGCAAGGAGCAAGGTTTGAAGAAGG
CGTGCAGATTAACAAGGGCTTGTTCGCGCTGGCAAAGGTCATATCGGCAT
TGGCCGATAAGGTTGCTCACGTTCCGTACCGAGATAGCAATCTCACGCGT
CTTCTGCAGGACAGTCTTGGTGGAAACGCAAAGACGCTTTTGATTGCGTG
CGTGTCGCCGGCCGATTCCAGTCGCGAGGAAACGCTGGGCACGCTTCGAT
ATGCGGCGCGAGCAAAACGTATCCAGAATAAGCCCGTGGTCAATACAGAG
CCCGATAGCGTTGAGATTTCAGACCTTCGCGCGGCGCTTGCGAGGGCACG
CGCGCAGATAGCGTCGCTTGTTGCGGAGAATGAAAGATTGAGGGGCAGAG
GAAAACGAGTTGCTTCACCTCGGTCGCCGCTTTCACATGCGACGGGCATG
CTGAATCAGGTGCGGAATGACGAGAGTCCGAAACGAGTTGAGGCTACAGC
CGGTAGGGACGATGTGCTTGTGAATGGTTTGAAGGAACGCATCGCCGAGC
TTGAGAGGGTGTTGGAGACGGCTGGTATTGTTGTCGACCGGGGGCAACAG
AGTCCCCTGAGAAAGATTCGACATGTCGGCGTTTCCTCGTTGTCCACTTC
GAGGGAGAATCATGGGAGGGCACCCAAGAGACGGCCGCGCGTGATGAGGG
AACCTTCCTCCAAGGCTGCCAGTTTTGATGCACAGAGCAGTGAGAAGAGG
GAGGTGCGGGTTGGACGTACTCAATCGGAAAAGACTCTGCCGGCAGCAAG
ACGCAATTTTGGCAATCGCTCTTCTCCGGCAAGAGAGGAGCACGACGTGA
TTGAACCCAGTGGATATGAAGATGAACTTGAAACGAAGGTTGTGAATGTT
TTGTCTGCTCACCGAATGGACGAGATGAAACGAACTTTTGCAGAACGGCT
GCAACAAGCGGAAGAAGATAAGACAGCCATCGATAGTGCGAGGTTGAAAC
TTGTGAAACGCTTATCATCAATCCACAAAAAGCATGAACGAGATCTGGAG
GAACTCAAGAGTGCTCATCAGACGCAGATGATGGAGATGAGATCTCGATT
GGCTGACGTCAAAAGATTGGAAGCGGAGAGCGTTCGCATGTGTAAGATGC
GCGATGGAAGTGATGCTGCTCGAAAGAAGCTCATGGCCAGGGTTGAGTCG
GCGGAAAAATCTCGAGATGAAGCTATATCACGACTGGCTGGTGTTGTGAG
CCGTACGGAAACGCTGAAGAGAAGTTTGTCGAAAGAGAACAGAGAATTGT
CAAAGAATGAACGCATGCTAAAGGTAGAACTGAATCGTCACAAGATCACG
TCGGCCAAACAACAGGCACTTGTGAATCGACTACGATTGGAGAATGAGAC
GATGAGGATTCGCTTGCGTGATATTGGGCGACAACAAGTTCGTCGTGCCA
ATTCAGGTATCACTCCTACTACCACTCGGGCTCAATGCTGA

protein sequence of Gcaud1723.t1

>Gcaud1723.t1 ID=Gcaud1723.t1|Name=Gcaud1723.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=747bp
MSIGARPGATKHATRSEAVRVVINARPLLPFELADNAQCALQHHNNPPRV
SLRRPGAADVHFSQFDAVYAAKHDRKPDALYLQHVRPMLDSLFQGVNVTV
FAYGQTSAGKSFTMAHLTQCVARDVFQLKRAAERARRTVVVRVGFVEIYK
ERIRDLVDANCRPAVPVQVRERRVKGARHVFLDGARERCVQDENALVSII
RDGNDVRRTAATGMNASSSRSHSVITITVQQESEGNECLFSKLHLVDLAG
SERVKRTAAQGARFEEGVQINKGLFALAKVISALADKVAHVPYRDSNLTR
LLQDSLGGNAKTLLIACVSPADSSREETLGTLRYAARAKRIQNKPVVNTE
PDSVEISDLRAALARARAQIASLVAENERLRGRGKRVASPRSPLSHATGM
LNQVRNDESPKRVEATAGRDDVLVNGLKERIAELERVLETAGIVVDRGQQ
SPLRKIRHVGVSSLSTSRENHGRAPKRRPRVMREPSSKAASFDAQSSEKR
EVRVGRTQSEKTLPAARRNFGNRSSPAREEHDVIEPSGYEDELETKVVNV
LSAHRMDEMKRTFAERLQQAEEDKTAIDSARLKLVKRLSSIHKKHERDLE
ELKSAHQTQMMEMRSRLADVKRLEAESVRMCKMRDGSDAARKKLMARVES
AEKSRDEAISRLAGVVSRTETLKRSLSKENRELSKNERMLKVELNRHKIT
SAKQQALVNRLRLENETMRIRLRDIGRQQVRRANSGITPTTTRAQC*

mRNA from alignment at NODE_849_length_17037_cov_4.361560:14717..16957-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1723.t1 ID=Gcaud1723.t1|Name=Gcaud1723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2241bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:14717..16957- (Gracilaria caudata M_176_S67 male)
ATGAGCATTGGCGCGCGCCCCGGCGCGACGAAGCATGCGACGCGGTCGGA
GGCGGTGCGCGTGGTCATCAACGCGCGCCCCCTGCTTCCGTTCGAACTGG
CGGACAATGCGCAGTGCGCGTTGCAACACCACAACAACCCGCCGCGCGTG
TCGCTGCGACGACCCGGCGCGGCCGACGTGCACTTCTCGCAGTTCGACGC
CGTGTACGCCGCCAAGCACGACAGAAAGCCGGACGCGTTGTATCTGCAAC
ACGTGCGTCCCATGCTTGACTCGCTGTTCCAAGGCGTCAATGTGACCGTG
TTTGCGTACGGACAGACGAGCGCGGGCAAGAGTTTTACCATGGCGCACTT
GACGCAGTGCGTGGCGAGGGATGTGTTTCAGTTGAAGAGGGCGGCCGAAC
GCGCGCGACGCACCGTGGTTGTGCGCGTGGGCTTTGTGGAGATTTACAAG
GAGCGAATCCGCGACTTGGTGGACGCCAATTGTAGACCGGCTGTGCCGGT
GCAGGTGAGGGAGAGGCGTGTTAAGGGCGCGAGGCATGTGTTCTTGGACG
GTGCGAGGGAGCGGTGTGTGCAGGATGAAAACGCGCTTGTGTCTATTATT
CGAGATGGCAATGATGTTCGACGAACTGCGGCCACTGGCATGAATGCATC
CTCTTCTAGAAGTCACTCTGTGATCACTATTACCGTGCAGCAGGAGAGTG
AGGGCAATGAATGTTTGTTTTCCAAGCTGCATCTCGTCGATTTGGCGGGC
AGTGAACGCGTCAAGCGCACCGCGGCGCAAGGAGCAAGGTTTGAAGAAGG
CGTGCAGATTAACAAGGGCTTGTTCGCGCTGGCAAAGGTCATATCGGCAT
TGGCCGATAAGGTTGCTCACGTTCCGTACCGAGATAGCAATCTCACGCGT
CTTCTGCAGGACAGTCTTGGTGGAAACGCAAAGACGCTTTTGATTGCGTG
CGTGTCGCCGGCCGATTCCAGTCGCGAGGAAACGCTGGGCACGCTTCGAT
ATGCGGCGCGAGCAAAACGTATCCAGAATAAGCCCGTGGTCAATACAGAG
CCCGATAGCGTTGAGATTTCAGACCTTCGCGCGGCGCTTGCGAGGGCACG
CGCGCAGATAGCGTCGCTTGTTGCGGAGAATGAAAGATTGAGGGGCAGAG
GAAAACGAGTTGCTTCACCTCGGTCGCCGCTTTCACATGCGACGGGCATG
CTGAATCAGGTGCGGAATGACGAGAGTCCGAAACGAGTTGAGGCTACAGC
CGGTAGGGACGATGTGCTTGTGAATGGTTTGAAGGAACGCATCGCCGAGC
TTGAGAGGGTGTTGGAGACGGCTGGTATTGTTGTCGACCGGGGGCAACAG
AGTCCCCTGAGAAAGATTCGACATGTCGGCGTTTCCTCGTTGTCCACTTC
GAGGGAGAATCATGGGAGGGCACCCAAGAGACGGCCGCGCGTGATGAGGG
AACCTTCCTCCAAGGCTGCCAGTTTTGATGCACAGAGCAGTGAGAAGAGG
GAGGTGCGGGTTGGACGTACTCAATCGGAAAAGACTCTGCCGGCAGCAAG
ACGCAATTTTGGCAATCGCTCTTCTCCGGCAAGAGAGGAGCACGACGTGA
TTGAACCCAGTGGATATGAAGATGAACTTGAAACGAAGGTTGTGAATGTT
TTGTCTGCTCACCGAATGGACGAGATGAAACGAACTTTTGCAGAACGGCT
GCAACAAGCGGAAGAAGATAAGACAGCCATCGATAGTGCGAGGTTGAAAC
TTGTGAAACGCTTATCATCAATCCACAAAAAGCATGAACGAGATCTGGAG
GAACTCAAGAGTGCTCATCAGACGCAGATGATGGAGATGAGATCTCGATT
GGCTGACGTCAAAAGATTGGAAGCGGAGAGCGTTCGCATGTGTAAGATGC
GCGATGGAAGTGATGCTGCTCGAAAGAAGCTCATGGCCAGGGTTGAGTCG
GCGGAAAAATCTCGAGATGAAGCTATATCACGACTGGCTGGTGTTGTGAG
CCGTACGGAAACGCTGAAGAGAAGTTTGTCGAAAGAGAACAGAGAATTGT
CAAAGAATGAACGCATGCTAAAGGTAGAACTGAATCGTCACAAGATCACG
TCGGCCAAACAACAGGCACTTGTGAATCGACTACGATTGGAGAATGAGAC
GATGAGGATTCGCTTGCGTGATATTGGGCGACAACAAGTTCGTCGTGCCA
ATTCAGGTATCACTCCTACTACCACTCGGGCTCAATGCTGA

Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:14717..16957-

>Gcaud1723.t1 ID=Gcaud1723.t1|Name=Gcaud1723.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2241bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:14717..16957- (Gracilaria caudata M_176_S67 male)
ATGAGCATTGGCGCGCGCCCCGGCGCGACGAAGCATGCGACGCGGTCGGA
GGCGGTGCGCGTGGTCATCAACGCGCGCCCCCTGCTTCCGTTCGAACTGG
CGGACAATGCGCAGTGCGCGTTGCAACACCACAACAACCCGCCGCGCGTG
TCGCTGCGACGACCCGGCGCGGCCGACGTGCACTTCTCGCAGTTCGACGC
CGTGTACGCCGCCAAGCACGACAGAAAGCCGGACGCGTTGTATCTGCAAC
ACGTGCGTCCCATGCTTGACTCGCTGTTCCAAGGCGTCAATGTGACCGTG
TTTGCGTACGGACAGACGAGCGCGGGCAAGAGTTTTACCATGGCGCACTT
GACGCAGTGCGTGGCGAGGGATGTGTTTCAGTTGAAGAGGGCGGCCGAAC
GCGCGCGACGCACCGTGGTTGTGCGCGTGGGCTTTGTGGAGATTTACAAG
GAGCGAATCCGCGACTTGGTGGACGCCAATTGTAGACCGGCTGTGCCGGT
GCAGGTGAGGGAGAGGCGTGTTAAGGGCGCGAGGCATGTGTTCTTGGACG
GTGCGAGGGAGCGGTGTGTGCAGGATGAAAACGCGCTTGTGTCTATTATT
CGAGATGGCAATGATGTTCGACGAACTGCGGCCACTGGCATGAATGCATC
CTCTTCTAGAAGTCACTCTGTGATCACTATTACCGTGCAGCAGGAGAGTG
AGGGCAATGAATGTTTGTTTTCCAAGCTGCATCTCGTCGATTTGGCGGGC
AGTGAACGCGTCAAGCGCACCGCGGCGCAAGGAGCAAGGTTTGAAGAAGG
CGTGCAGATTAACAAGGGCTTGTTCGCGCTGGCAAAGGTCATATCGGCAT
TGGCCGATAAGGTTGCTCACGTTCCGTACCGAGATAGCAATCTCACGCGT
CTTCTGCAGGACAGTCTTGGTGGAAACGCAAAGACGCTTTTGATTGCGTG
CGTGTCGCCGGCCGATTCCAGTCGCGAGGAAACGCTGGGCACGCTTCGAT
ATGCGGCGCGAGCAAAACGTATCCAGAATAAGCCCGTGGTCAATACAGAG
CCCGATAGCGTTGAGATTTCAGACCTTCGCGCGGCGCTTGCGAGGGCACG
CGCGCAGATAGCGTCGCTTGTTGCGGAGAATGAAAGATTGAGGGGCAGAG
GAAAACGAGTTGCTTCACCTCGGTCGCCGCTTTCACATGCGACGGGCATG
CTGAATCAGGTGCGGAATGACGAGAGTCCGAAACGAGTTGAGGCTACAGC
CGGTAGGGACGATGTGCTTGTGAATGGTTTGAAGGAACGCATCGCCGAGC
TTGAGAGGGTGTTGGAGACGGCTGGTATTGTTGTCGACCGGGGGCAACAG
AGTCCCCTGAGAAAGATTCGACATGTCGGCGTTTCCTCGTTGTCCACTTC
GAGGGAGAATCATGGGAGGGCACCCAAGAGACGGCCGCGCGTGATGAGGG
AACCTTCCTCCAAGGCTGCCAGTTTTGATGCACAGAGCAGTGAGAAGAGG
GAGGTGCGGGTTGGACGTACTCAATCGGAAAAGACTCTGCCGGCAGCAAG
ACGCAATTTTGGCAATCGCTCTTCTCCGGCAAGAGAGGAGCACGACGTGA
TTGAACCCAGTGGATATGAAGATGAACTTGAAACGAAGGTTGTGAATGTT
TTGTCTGCTCACCGAATGGACGAGATGAAACGAACTTTTGCAGAACGGCT
GCAACAAGCGGAAGAAGATAAGACAGCCATCGATAGTGCGAGGTTGAAAC
TTGTGAAACGCTTATCATCAATCCACAAAAAGCATGAACGAGATCTGGAG
GAACTCAAGAGTGCTCATCAGACGCAGATGATGGAGATGAGATCTCGATT
GGCTGACGTCAAAAGATTGGAAGCGGAGAGCGTTCGCATGTGTAAGATGC
GCGATGGAAGTGATGCTGCTCGAAAGAAGCTCATGGCCAGGGTTGAGTCG
GCGGAAAAATCTCGAGATGAAGCTATATCACGACTGGCTGGTGTTGTGAG
CCGTACGGAAACGCTGAAGAGAAGTTTGTCGAAAGAGAACAGAGAATTGT
CAAAGAATGAACGCATGCTAAAGGTAGAACTGAATCGTCACAAGATCACG
TCGGCCAAACAACAGGCACTTGTGAATCGACTACGATTGGAGAATGAGAC
GATGAGGATTCGCTTGCGTGATATTGGGCGACAACAAGTTCGTCGTGCCA
ATTCAGGTATCACTCCTACTACCACTCGGGCTCAATGCTGA