Gcaud1719.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1719.t1
Unique NameGcaud1719.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_849_length_17037_cov_4.361560contigNODE_849_length_17037_cov_4.361560:7481..7828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707772.1
Preferred nameEIF1B
PFAMsSUI1
Max annot lvl2759|Eukaryota
KEGG koko:K03113,ko:K09228
KEGG Pathwayko03013,map03013
GOsGO:0001666,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007549,GO:0008135,GO:0008150,GO:0008152,GO:0009048,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016282,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032991,GO:0033554,GO:0034248,GO:0034622,GO:0034641,GO:0034645,GO:0036293,GO:0036294,GO:0040029,GO:0042221,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070482,GO:0070887,GO:0070993,GO:0071453,GO:0071456,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904,GO:2000112
Evalue5.41e-53
EggNOG OGsCOG0023@1|root,KOG1770@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko03000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1719Gcaud1719Gracilaria caudata M_176_S67 malegeneNODE_849_length_17037_cov_4.361560 7481..7828 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1719.t1.start1Gcaud1719.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_849_length_17037_cov_4.361560 7481..7483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1719.t1.CDS1Gcaud1719.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_849_length_17037_cov_4.361560 7481..7828 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1719.t1.exon1Gcaud1719.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_849_length_17037_cov_4.361560 7481..7828 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1719.t1.stop1Gcaud1719.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_849_length_17037_cov_4.361560 7826..7828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1719.t1Gcaud1719.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_849_length_17037_cov_4.361560 7481..7828 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1719.t1 ID=Gcaud1719.t1|Name=Gcaud1719.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MNNEKALLGGVTAPFDPFADADGDDQVVTKGIVHIRLQQRNGRKSLTTIQ
GLDDKLDLAKLTKAFKKVFCCNGCVVDNAELGKVIQLQGDQREKVKGFLS
DEKIASKSMIKVHGI*
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spliced messenger RNA

>Gcaud1719.t1 ID=Gcaud1719.t1|Name=Gcaud1719.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:7481..7828+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACGAAAAAGCTCTGCTGGGAGGCGTCACAGCGCCATTTGACCC
GTTCGCCGACGCCGACGGCGATGATCAGGTTGTCACCAAAGGCATCGTCC
ACATCCGACTCCAGCAACGCAACGGACGCAAGTCCCTCACAACCATCCAA
GGCCTGGATGACAAGTTAGACCTCGCAAAGCTCACCAAGGCTTTCAAGAA
GGTGTTTTGTTGCAACGGTTGCGTCGTTGACAACGCTGAGCTTGGCAAGG
TTATCCAGCTGCAGGGAGACCAACGTGAGAAGGTCAAGGGCTTCCTTTCT
GATGAGAAGATTGCTAGCAAGTCCATGATCAAGGTTCATGGTATCTAA
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protein sequence of Gcaud1719.t1

>Gcaud1719.t1 ID=Gcaud1719.t1|Name=Gcaud1719.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MNNEKALLGGVTAPFDPFADADGDDQVVTKGIVHIRLQQRNGRKSLTTIQ
GLDDKLDLAKLTKAFKKVFCCNGCVVDNAELGKVIQLQGDQREKVKGFLS
DEKIASKSMIKVHGI*
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mRNA from alignment at NODE_849_length_17037_cov_4.361560:7481..7828+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1719.t1 ID=Gcaud1719.t1|Name=Gcaud1719.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:7481..7828+ (Gracilaria caudata M_176_S67 male)
ATGAACAACGAAAAAGCTCTGCTGGGAGGCGTCACAGCGCCATTTGACCC
GTTCGCCGACGCCGACGGCGATGATCAGGTTGTCACCAAAGGCATCGTCC
ACATCCGACTCCAGCAACGCAACGGACGCAAGTCCCTCACAACCATCCAA
GGCCTGGATGACAAGTTAGACCTCGCAAAGCTCACCAAGGCTTTCAAGAA
GGTGTTTTGTTGCAACGGTTGCGTCGTTGACAACGCTGAGCTTGGCAAGG
TTATCCAGCTGCAGGGAGACCAACGTGAGAAGGTCAAGGGCTTCCTTTCT
GATGAGAAGATTGCTAGCAAGTCCATGATCAAGGTTCATGGTATCTAA
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Coding sequence (CDS) from alignment at NODE_849_length_17037_cov_4.361560:7481..7828+

>Gcaud1719.t1 ID=Gcaud1719.t1|Name=Gcaud1719.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_849_length_17037_cov_4.361560:7481..7828+ (Gracilaria caudata M_176_S67 male)
ATGAACAACGAAAAAGCTCTGCTGGGAGGCGTCACAGCGCCATTTGACCC
GTTCGCCGACGCCGACGGCGATGATCAGGTTGTCACCAAAGGCATCGTCC
ACATCCGACTCCAGCAACGCAACGGACGCAAGTCCCTCACAACCATCCAA
GGCCTGGATGACAAGTTAGACCTCGCAAAGCTCACCAAGGCTTTCAAGAA
GGTGTTTTGTTGCAACGGTTGCGTCGTTGACAACGCTGAGCTTGGCAAGG
TTATCCAGCTGCAGGGAGACCAACGTGAGAAGGTCAAGGGCTTCCTTTCT
GATGAGAAGATTGCTAGCAAGTCCATGATCAAGGTTCATGGTATCTAA
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