Gcaud2312.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2312.t1
Unique NameGcaud2312.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length522
Homology
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BLAST of Gcaud2312.t1 vs. uniprot
Match: A0A2V3IUF9_9FLOR (Dynein alpha chain, flagellar outer arm n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUF9_9FLOR)

HSP 1 Score: 578 bits (1489), Expect = 9.440e-201
Identity = 304/542 (56.09%), Postives = 383/542 (70.66%), Query Frame = 0 
Query:    1 MEWLGDFASSKHSPPPRKGHTMTNLLDTPIVLVFAGEDEAGQLLNDMYALHVERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSDSIEAKAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAKGQVPGVYIFGGYSRDKTNYNVVYRLRISDWKLEVLAHVEKDADGNKKLIDSDGDDYHLQGDDEYGKRVI--PRDRESHGAIWLPGVGMLVVGGDGGVSILGDCWLFCQHPDDPQSWRWKELRLVPAGNRPGNKLPRLAGHSLLALPTNTLKVMVWGGILNTGQEVMASNVSYVIDLDKANIAQTIRVSNTGRAPKTGRILHGFVRSRDMLFAFGGCDSEGNIQIGTQYGRLLPNFKAPNQAASFFGEEAMAMAMRGTHPEKSCVDNK-----------RPAQGEANRES--STGAARTPLTGEVLEVMDMGLLVSITIEGKPFKGVLVANEEGDDAVMIDVSDDKQKANGQKSKMRDR-PSKRPKLDAAAEALPDSPPKVRPK-----QTETIHLE 521
            MEWLG+F +   +PPPRKGHTMT LL+TP++++F GEDE G L NDM+ LHVERR+W  ++Y  GPKP PRLLHTAVAISS ++++IGG+TW++  +   + +PT A+NDIWVFDY D SW EI  +    LP LSC SAVFGRAKGQVPGVYIFGG+ R + N +VVY+LR SDWKLE +  V      +KK  D+    ++  G     +++   PR+RESHGAIWLPG GMLVVGGDGG SILGDCWLF Q   DPQ+WRWKE+ L P G +  N+LP LAGHSL+ALPT+T++V+VWGGILN+GQEVM S  SYVIDLD+ + A T RV N G+ P TGRILHGF R+ D+LFA GGCD++GN+  GTQYGRLLP  KA  QAA FFG +A+  A+ G    K+ V+N            +  Q +AN+++  + G +R P  G+VLEV DMGLLVSI I+GKPFKGVLV N         + ++DK + +GQKSK  +  P K+PKLD AAEALPDSP ++RPK     + E I LE
Sbjct:    1 MEWLGNFEARGPAPPPRKGHTMTRLLNTPLLVMFGGEDETGSLQNDMFVLHVERRQWHNVTYASGPKPSPRLLHTAVAISSHMLIIIGGETWETGGT---EVSPTIAMNDIWVFDYYDSSWREIGRSDFERLPVLSCLSAVFGRAKGQVPGVYIFGGFGRSERNGSVVYKLRTSDWKLETIRVVN-----SKKRKDT----HNSIGRSPNPEKITWHPRERESHGAIWLPGYGMLVVGGDGGSSILGDCWLFFQDEKDPQTWRWKEIHLKPVGGQTENRLPPLAGHSLVALPTSTVQVLVWGGILNSGQEVMDSEFSYVIDLDRLDRAHTRRVKNVGKTPATGRILHGFARANDLLFAVGGCDADGNVLPGTQYGRLLPKLKASVQAARFFGPKALRTAV-GETDVKTDVNNAVQNTGTEDSAAKKVQAKANKDADGTNGRSRGPFPGKVLEVTDMGLLVSIVIDGKPFKGVLVKNPTNGKREKKEGAEDKMQIDGQKSKPLEAVPRKKPKLDPAAEALPDSP-EIRPKPKPISREEVIQLE 528
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BLAST of Gcaud2312.t1 vs. uniprot
Match: DYHA_CHLRE (Dynein alpha chain, flagellar outer arm n=5 Tax=Chlamydomonas TaxID=3052 RepID=DYHA_CHLRE)

HSP 1 Score: 67.0 bits (162), Expect = 7.630e-8
Identity = 46/167 (27.54%), Postives = 73/167 (43.71%), Query Frame = 0 
Query:   13 SPPPRKGHTMTNLLDTPIVLVFAG-EDEAGQLLNDMYALHV---ERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSDSIEAKAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAKGQVPGVYIFGGYSRDKTNYNVVYRLRISD 175
            +P PR GH+ T L +  ++    G +D      ND+Y L     +  +WK++     P P  R  H A+A+    ++V GG                   ND+W+F+Y DKSW  ++  G+   P    ++  FG        V+IFGGY      YN ++ L   +
Sbjct:   14 APCPRSGHSFTVLGERFVLFGGCGRKDGKAAAFNDLYELDTSDPDEYKWKELVVANAPPPRAR--HAAIALDDKRLLVFGG------------LNKRIRYNDVWLFNYDDKSWTCMEVEGAAPEPRAHFTATRFGSR------VFIFGGYGGSGQVYNEMWVLHFGE 160
The following BLAST results are available for this feature:
BLAST of Gcaud2312.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUF9_9FLOR9.440e-20156.09Dynein alpha chain, flagellar outer arm n=1 Tax=Gr... [more]
DYHA_CHLRE7.630e-827.54Dynein alpha chain, flagellar outer arm n=5 Tax=Ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015915Kelch-type beta propellerGENE3D2.120.10.80coord: 202..388
e-value: 1.6E-11
score: 45.8
IPR015915Kelch-type beta propellerGENE3D2.120.10.80coord: 2..195
e-value: 4.6E-25
score: 90.7
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 12..250
NoneNo IPR availablePFAMPF13418Kelch_4coord: 70..124
e-value: 6.8E-7
score: 29.1
coord: 16..66
e-value: 1.2E-8
score: 34.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..499
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..521
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..429
NoneNo IPR availablePANTHERPTHR23244KELCH REPEAT DOMAINcoord: 111..376
coord: 14..162
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 152..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_845_length_17097_cov_4.330472contigNODE_845_length_17097_cov_4.330472:2119..3684 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2312.t1Gcaud2312.t1Gracilaria caudata M_176_S67 malemRNANODE_845_length_17097_cov_4.330472 2119..3684 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2312.t1 ID=Gcaud2312.t1|Name=Gcaud2312.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=522bp
MEWLGDFASSKHSPPPRKGHTMTNLLDTPIVLVFAGEDEAGQLLNDMYAL
HVERREWKQISYGPGPKPHPRLLHTAVAISSTLMVVIGGDTWDSSDSIEA
KAAPTTALNDIWVFDYSDKSWMEIKNTGSTELPFLSCSSAVFGRAKGQVP
GVYIFGGYSRDKTNYNVVYRLRISDWKLEVLAHVEKDADGNKKLIDSDGD
DYHLQGDDEYGKRVIPRDRESHGAIWLPGVGMLVVGGDGGVSILGDCWLF
CQHPDDPQSWRWKELRLVPAGNRPGNKLPRLAGHSLLALPTNTLKVMVWG
GILNTGQEVMASNVSYVIDLDKANIAQTIRVSNTGRAPKTGRILHGFVRS
RDMLFAFGGCDSEGNIQIGTQYGRLLPNFKAPNQAASFFGEEAMAMAMRG
THPEKSCVDNKRPAQGEANRESSTGAARTPLTGEVLEVMDMGLLVSITIE
GKPFKGVLVANEEGDDAVMIDVSDDKQKANGQKSKMRDRPSKRPKLDAAA
EALPDSPPKVRPKQTETIHLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR011043Gal_Oxase/kelch_b-propeller