Gcaud2303.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2303.t2
Unique NameGcaud2303.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length224
Homology
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BLAST of Gcaud2303.t2 vs. uniprot
Match: A0A2V3IT93_9FLOR (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT93_9FLOR)

HSP 1 Score: 221 bits (564), Expect = 2.310e-63
Identity = 123/166 (74.10%), Postives = 134/166 (80.72%), Query Frame = 0 
Query:   33 TVDALLSQAAFLCSRGRHAAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALRAAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEK-----SLPTQLAALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFA 193
            +V+ALL+QA+FLC+RGRH AA   V T LS L S D QY  ALVQLAAV +AH+R  DAE TLRRALRAAPDFVPALQ+LATILS NPVHL EALQLLR A  LA  CE       SLP QLAALLTDVGVRLKMAGLPADAV+H++EALEVCPTYAQAMYNMA A
Sbjct:   43 SVEALLAQASFLCARGRHTAAAKAVTTTLSLLNSDDPQYPSALVQLAAVHVAHARFFDAEDTLRRALRAAPDFVPALQALATILSNNPVHLREALQLLRQAVTLASSCETPNFGADSLPLQLAALLTDVGVRLKMAGLPADAVRHYTEALEVCPTYAQAMYNMAVA 208
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BLAST of Gcaud2303.t2 vs. uniprot
Match: A0A7S0ZKC9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKC9_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 2.420e-6
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 0 
Query:  147 TQLAALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNM 190
            T LAALLTD+GVRLK+A L +DA+  ++EAL   P+YAQA YN+
Sbjct:  203 TSLAALLTDIGVRLKLAELSSDAIVMYNEALNADPSYAQAYYNL 246
The following BLAST results are available for this feature:
BLAST of Gcaud2303.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IT93_9FLOR2.310e-6374.10Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A7S0ZKC9_9RHOD2.420e-661.36Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 72..105
e-value: 13.0
score: 13.9
coord: 150..183
e-value: 22.0
score: 11.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 29..198
e-value: 1.2E-17
score: 66.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 36..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:2574..3245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2303.t2Gcaud2303.t2Gracilaria caudata M_176_S67 malemRNANODE_838_length_17196_cov_5.011166 2574..3245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2303.t2 ID=Gcaud2303.t2|Name=Gcaud2303.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=224bp
MTATPLPVTSTRRTPSDSCDSSPRSPPARARPTVDALLSQAAFLCSRGRH
AAAEHVVITALSFLASTDAQYAPALVQLAAVQLAHSRVIDAEQTLRRALR
AAPDFVPALQSLATILSKNPVHLPEALQLLRHAFNLAPPCEEKSLPTQLA
ALLTDVGVRLKMAGLPADAVKHFSEALEVCPTYAQAMYNMAFAMQTHHTP
TRPKCSTSNVSSTIIRMWKPVAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf