Gcaud2307.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2307.t1
Unique NameGcaud2307.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:9794..11308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.02e-102
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2307Gcaud2307Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 9794..11308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2307.t1Gcaud2307.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 9794..11308 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2307.t1.start1Gcaud2307.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 9794..9796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2307.t1.CDS1Gcaud2307.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 9794..10399 +
Gcaud2307.t1.CDS2Gcaud2307.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 10510..10803 +
Gcaud2307.t1.CDS3Gcaud2307.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 10937..11308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2307.t1.exon1Gcaud2307.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 9794..10399 +
Gcaud2307.t1.exon2Gcaud2307.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 10510..10803 +
Gcaud2307.t1.exon3Gcaud2307.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 10937..11308 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2307.t1.intron1Gcaud2307.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_838_length_17196_cov_5.011166 10400..10509 +
Gcaud2307.t1.intron2Gcaud2307.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_838_length_17196_cov_5.011166 10804..10936 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2307.t1.stop1Gcaud2307.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_838_length_17196_cov_5.011166 11306..11308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2307.t1 ID=Gcaud2307.t1|Name=Gcaud2307.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=424bp
MEATAEAPQPHRSGWLSKEGKRLKARSRRYLVLQKSQLAHHVKESSPATW
QIALNDIRVTIGDRPLQFIISAGGRSVAFFADDVEDYHGWVRALKSTQSV
VEDFYTLGKQLGKGSYGEVFLATDRLSHAQVAVKIIRKNPVNRKQKKFLQ
REQAIMTTVDHDNIVKTIEIFDSSSKLAIVSEYMKGGELFDLIITSQYFT
EDKARHISKQILEGVRYLHSRNIVHRDIKPENVLCASKTWPLNVKLTDFG
LSNFLGDSHGQDDAMLLSHVGTSYYIAPEIVGKGGYGPAVDIWASGVVLY
IMLCGRFPFWGKTDIEYMKSLSRGPCMVGEGWDQVSDEGKQFLKQLLQVD
PKKRLTAEQALNHPWISRDAPALDRRLSSISGLAVIASKNKLRVTPGGKS
SKGRSENHSEGPNSINETVTNID*
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spliced messenger RNA

>Gcaud2307.t1 ID=Gcaud2307.t1|Name=Gcaud2307.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:9794..11308+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTACTGCTGAGGCCCCCCAACCGCATCGAAGTGGCTGGCTTTC
AAAAGAAGGGAAGCGTTTAAAGGCCAGAAGCAGACGGTACCTTGTTCTTC
AAAAATCCCAGCTCGCCCATCATGTCAAGGAAAGCAGCCCTGCAACCTGG
CAAATTGCCCTCAACGATATCCGAGTCACAATTGGAGACCGCCCTCTGCA
ATTCATTATCTCAGCTGGTGGAAGAAGCGTAGCTTTCTTTGCAGACGATG
TTGAAGACTATCATGGTTGGGTTCGCGCTTTAAAGTCTACTCAGAGCGTT
GTGGAAGACTTTTACACACTTGGAAAACAACTTGGCAAGGGTTCTTATGG
AGAAGTATTTCTTGCCACAGACAGGTTATCGCATGCACAGGTTGCTGTAA
AGATTATCAGAAAGAACCCGGTAAACAGGAAGCAAAAGAAGTTCCTTCAA
CGGGAGCAGGCTATCATGACTACCGTGGACCATGATAATATCGTGAAAAC
TATTGAAATCTTCGACAGCTCCAGCAAGCTTGCAATCGTGAGTGAGTATA
TGAAAGGTGGAGAACTTTTTGATCTCATTATTACTTCTCAGTACTTCACG
GAAGACAAAGCTCGTCACATTTCCAAACAAATTCTTGAAGGGGTTCGATA
TTTGCATTCTCGCAATATTGTGCACCGAGATATCAAACCAGAGAATGTAC
TTTGTGCCTCTAAAACATGGCCTCTCAACGTCAAACTTACAGACTTCGGC
CTCTCCAACTTTCTTGGAGACAGTCATGGCCAGGATGACGCAATGCTTTT
GTCACATGTGGGCACTTCGTACTATATAGCGCCTGAAATTGTTGGAAAAG
GAGGCTACGGACCTGCGGTCGATATTTGGGCTTCCGGTGTTGTACTATAC
ATCATGTTATGTGGTCGATTTCCGTTCTGGGGCAAAACTGACATCGAGTA
CATGAAAAGCTTGTCTCGTGGACCTTGCATGGTTGGAGAGGGATGGGATC
AGGTCTCCGATGAAGGGAAGCAGTTTCTGAAGCAATTGCTTCAGGTAGAT
CCCAAGAAACGACTTACGGCTGAGCAAGCTCTGAACCATCCATGGATTTC
ACGAGATGCACCTGCTCTCGATCGCCGGCTTTCTAGCATAAGTGGGCTGG
CAGTGATTGCTTCCAAAAACAAGTTACGCGTTACGCCAGGAGGAAAGTCA
TCCAAAGGACGGTCGGAGAATCACAGTGAGGGTCCGAATAGTATCAACGA
AACAGTCACCAACATTGATTAA
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protein sequence of Gcaud2307.t1

>Gcaud2307.t1 ID=Gcaud2307.t1|Name=Gcaud2307.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=424bp
MEATAEAPQPHRSGWLSKEGKRLKARSRRYLVLQKSQLAHHVKESSPATW
QIALNDIRVTIGDRPLQFIISAGGRSVAFFADDVEDYHGWVRALKSTQSV
VEDFYTLGKQLGKGSYGEVFLATDRLSHAQVAVKIIRKNPVNRKQKKFLQ
REQAIMTTVDHDNIVKTIEIFDSSSKLAIVSEYMKGGELFDLIITSQYFT
EDKARHISKQILEGVRYLHSRNIVHRDIKPENVLCASKTWPLNVKLTDFG
LSNFLGDSHGQDDAMLLSHVGTSYYIAPEIVGKGGYGPAVDIWASGVVLY
IMLCGRFPFWGKTDIEYMKSLSRGPCMVGEGWDQVSDEGKQFLKQLLQVD
PKKRLTAEQALNHPWISRDAPALDRRLSSISGLAVIASKNKLRVTPGGKS
SKGRSENHSEGPNSINETVTNID*
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:9794..11308+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2307.t1 ID=Gcaud2307.t1|Name=Gcaud2307.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:9794..11308+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCTACTGCTGAGGCCCCCCAACCGCATCGAAGTGGCTGGCTTTC
AAAAGAAGGGAAGCGTTTAAAGGCCAGAAGCAGACGGTACCTTGTTCTTC
AAAAATCCCAGCTCGCCCATCATGTCAAGGAAAGCAGCCCTGCAACCTGG
CAAATTGCCCTCAACGATATCCGAGTCACAATTGGAGACCGCCCTCTGCA
ATTCATTATCTCAGCTGGTGGAAGAAGCGTAGCTTTCTTTGCAGACGATG
TTGAAGACTATCATGGTTGGGTTCGCGCTTTAAAGTCTACTCAGAGCGTT
GTGGAAGACTTTTACACACTTGGAAAACAACTTGGCAAGGGTTCTTATGG
AGAAGTATTTCTTGCCACAGACAGGTTATCGCATGCACAGGTTGCTGTAA
AGATTATCAGAAAGAACCCGGTAAACAGGAAGCAAAAGAAGTTCCTTCAA
CGGGAGCAGGCTATCATGACTACCGTGGACCATGATAATATCGTGAAAAC
TATTGAAATCTTCGACAGCTCCAGCAAGCTTGCAATCGTGAGTGAGTATA
TGAAAGGTGGAGAACTTTTTGATCTCATTATTACTTCTCAGTACTTCACG
GAAGACGTAAGTTAGTTGCTTCACCAACACACATACCACTCACTGTTTTG
CAACGAAGCCGAGATCCTTAGGCGTTGCTTTCTAACAAACATGTATCTTC
TCGACAAATTCTTCAGAAAGCTCGTCACATTTCCAAACAAATTCTTGAAG
GGGTTCGATATTTGCATTCTCGCAATATTGTGCACCGAGATATCAAACCA
GAGAATGTACTTTGTGCCTCTAAAACATGGCCTCTCAACGTCAAACTTAC
AGACTTCGGCCTCTCCAACTTTCTTGGAGACAGTCATGGCCAGGATGACG
CAATGCTTTTGTCACATGTGGGCACTTCGTACTATATAGCGCCTGAAATT
GTTGGAAAAGGAGGCTACGGACCTGCGGTCGATATTTGGGCTTCCGGTGT
TGTACTATACGTAAGTTGATGGCTGACCTATCTTTCGGGAGTTTCGCTCT
CTTTCAGATACATTCATTACGAGCGATCGTGTCCTCAGCGATTACTAACA
GTTCATAACAAAACGTTCCCTGATTGACTTCCTTTGCGTGTAGATCATGT
TATGTGGTCGATTTCCGTTCTGGGGCAAAACTGACATCGAGTACATGAAA
AGCTTGTCTCGTGGACCTTGCATGGTTGGAGAGGGATGGGATCAGGTCTC
CGATGAAGGGAAGCAGTTTCTGAAGCAATTGCTTCAGGTAGATCCCAAGA
AACGACTTACGGCTGAGCAAGCTCTGAACCATCCATGGATTTCACGAGAT
GCACCTGCTCTCGATCGCCGGCTTTCTAGCATAAGTGGGCTGGCAGTGAT
TGCTTCCAAAAACAAGTTACGCGTTACGCCAGGAGGAAAGTCATCCAAAG
GACGGTCGGAGAATCACAGTGAGGGTCCGAATAGTATCAACGAAACAGTC
ACCAACATTGATTAA
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:9794..11308+

>Gcaud2307.t1 ID=Gcaud2307.t1|Name=Gcaud2307.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1272bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:9794..11308+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCTACTGCTGAGGCCCCCCAACCGCATCGAAGTGGCTGGCTTTC
AAAAGAAGGGAAGCGTTTAAAGGCCAGAAGCAGACGGTACCTTGTTCTTC
AAAAATCCCAGCTCGCCCATCATGTCAAGGAAAGCAGCCCTGCAACCTGG
CAAATTGCCCTCAACGATATCCGAGTCACAATTGGAGACCGCCCTCTGCA
ATTCATTATCTCAGCTGGTGGAAGAAGCGTAGCTTTCTTTGCAGACGATG
TTGAAGACTATCATGGTTGGGTTCGCGCTTTAAAGTCTACTCAGAGCGTT
GTGGAAGACTTTTACACACTTGGAAAACAACTTGGCAAGGGTTCTTATGG
AGAAGTATTTCTTGCCACAGACAGGTTATCGCATGCACAGGTTGCTGTAA
AGATTATCAGAAAGAACCCGGTAAACAGGAAGCAAAAGAAGTTCCTTCAA
CGGGAGCAGGCTATCATGACTACCGTGGACCATGATAATATCGTGAAAAC
TATTGAAATCTTCGACAGCTCCAGCAAGCTTGCAATCGTGAGTGAGTATA
TGAAAGGTGGAGAACTTTTTGATCTCATTATTACTTCTCAGTACTTCACG
GAAGACAAAGCTCGTCACATTTCCAAACAAATTCTTGAAGGGGTTCGATA
TTTGCATTCTCGCAATATTGTGCACCGAGATATCAAACCAGAGAATGTAC
TTTGTGCCTCTAAAACATGGCCTCTCAACGTCAAACTTACAGACTTCGGC
CTCTCCAACTTTCTTGGAGACAGTCATGGCCAGGATGACGCAATGCTTTT
GTCACATGTGGGCACTTCGTACTATATAGCGCCTGAAATTGTTGGAAAAG
GAGGCTACGGACCTGCGGTCGATATTTGGGCTTCCGGTGTTGTACTATAC
ATCATGTTATGTGGTCGATTTCCGTTCTGGGGCAAAACTGACATCGAGTA
CATGAAAAGCTTGTCTCGTGGACCTTGCATGGTTGGAGAGGGATGGGATC
AGGTCTCCGATGAAGGGAAGCAGTTTCTGAAGCAATTGCTTCAGGTAGAT
CCCAAGAAACGACTTACGGCTGAGCAAGCTCTGAACCATCCATGGATTTC
ACGAGATGCACCTGCTCTCGATCGCCGGCTTTCTAGCATAAGTGGGCTGG
CAGTGATTGCTTCCAAAAACAAGTTACGCGTTACGCCAGGAGGAAAGTCA
TCCAAAGGACGGTCGGAGAATCACAGTGAGGGTCCGAATAGTATCAACGA
AACAGTCACCAACATTGATTAA
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