Gcaud2302.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2302.t1
Unique NameGcaud2302.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Homology
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3IIK8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIK8_9FLOR)

HSP 1 Score: 185 bits (470), Expect = 6.830e-55
Identity = 88/163 (53.99%), Postives = 115/163 (70.55%), Query Frame = 0
Query:    1 MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEY--------RLVKTQYTDAAQIADRMLVNDSVIDNQLLHGNT 155
            M +A L++  +I+I AY+AAF+PWTAFS KDFIS KWKTVR TR +GYINL+ SI+PA YILFY   Q    ++ E +AA+ A+LFALLH  R+ WGLWQL  FR WC  SIDAL+ MGI +          V+     A +++D MLVNDS++DNQ++HG+T
Sbjct:    1 MKIAALSDKWYIVIPAYVAAFMPWTAFSTKDFISDKWKTVRRTRTDGYINLLCSIIPAIYILFYATTQYTANDWQEGSAAIAALLFALLHGARSAWGLWQLYVFRTWCAESIDALEAMGITFIFSDKERRHRVEKNCRSAREMSDEMLVNDSIVDNQIIHGDT 163          
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3IEX5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEX5_9FLOR)

HSP 1 Score: 160 bits (406), Expect = 2.160e-47
Identity = 83/157 (52.87%), Postives = 105/157 (66.88%), Query Frame = 0
Query:    1 MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEYR--------LVKTQYTDAAQIADRMLVNDSVIDNQ 149
            M LA L++  +I++ AYIAAF+PWTAFSAKDFIS KWK+ R TR+ GYINL+F+IVPA YI+ YC  Q    ++ E  AA+ A+ FALLH  R  WGLWQL  FR  C  SI+AL+ MG+ YR        +V      A + AD MLVN+ V+DNQ
Sbjct:    1 MELAALSDVFYIVVLAYIAAFMPWTAFSAKDFISDKWKSTRHTRQAGYINLLFAIVPACYIVLYCRVQFFALDWKEGCAAVAALAFALLHGFRLGWGLWQLYLFRSSCADSIEALEAMGVTYRYCDENRRDVVDKHCKSAWEKADEMLVNNRVVDNQ 157          
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3J4P0_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4P0_9FLOR)

HSP 1 Score: 167 bits (424), Expect = 1.410e-46
Identity = 81/163 (49.69%), Postives = 109/163 (66.87%), Query Frame = 0
Query:    1 MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEY--------RLVKTQYTDAAQIADRMLVNDSVIDNQLLHGNT 155
            M LA+L++  +I++ AYI AFL W AFS   F + KWK+VR TRR GYINL FSIVPA YI+ YC  Q    +  E +AAL+ + FALLHA R+ WGLWQL+ FR WC  SI+AL+ +G+ Y        ++V+ Q   A +  D MLVND +++NQ+L+G T
Sbjct:    1 MELASLSDEWYIVLPAYILAFLLWVAFSGTSFTNDKWKSVRLTRRAGYINLAFSIVPACYIMLYCTIQFSALDNREGSAALIVLYFALLHAFRSAWGLWQLHLFRTWCSESIEALEAIGVRYSFCDENRRQIVEDQCRSAWETCDEMLVNDGIVNNQILYGET 163          
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3IY16_9FLOR (Cytochrome c oxidase assembly factor 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY16_9FLOR)

HSP 1 Score: 166 bits (420), Expect = 2.740e-44
Identity = 81/170 (47.65%), Postives = 110/170 (64.71%), Query Frame = 0
Query:    1 MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEYRLVKTQYTDA----------AQIADRMLVNDSVIDNQLLHGNTPVLLA 160
            M++  LAE+ + I++AY+AAF+PWT  + KDFIS KWKTVR TR  GY N+ +SI+P  Y++ YC+ Q    ++ E  AA+VA LFALLH  RT WGLWQL  FR W + SI AL T+GI Y L  +  T            A IAD +L+N+ ++DNQ++HGN    L+
Sbjct:    1 MTVDTLAESFWFIVSAYMAAFVPWTIIANKDFISEKWKTVRNTRHAGYHNMFWSIIPFFYVIVYCIVQGLSGDYKETCAAVVATLFALLHMFRTLWGLWQLRSFRIWAENSIRALKTLGITYDLHGSSTTGKNDCTAESLTPAYIADHILINEQIVDNQIMHGNVHCFLS 170          
BLAST of Gcaud2302.t1 vs. uniprot
Match: R7QDX8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDX8_CHOCR)

HSP 1 Score: 140 bits (353), Expect = 4.090e-37
Identity = 70/124 (56.45%), Postives = 85/124 (68.55%), Query Frame = 0
Query:    1 MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEYRL 124
            M+  +LAEN  I++ AY AAFLPWTA +  DFIS+KW+ VR  R  GY+NL+ ++VPA YILFY V Q+   +  EM  ALVAMLFALLH  RT WGLWQL  F  W   SI +L  +GIEY L
Sbjct:    1 MAFDHLAENTIIVLLAYTAAFLPWTALTTFDFISAKWRRVRDVRIAGYVNLVLALVPAFYILFYMVVQSNVDQ-KEMFTALVAMLFALLHVVRTLWGLWQLQLFVKWAVKSITSLRALGIEYEL 123          
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3IIQ1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIQ1_9FLOR)

HSP 1 Score: 132 bits (332), Expect = 1.400e-34
Identity = 68/174 (39.08%), Postives = 100/174 (57.47%), Query Frame = 0
Query:    1 MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEYRLVKTQYT-----------DAAQIADRMLVNDSVIDNQLLHGNTPVLLALRQ 163
            + L  L+   + +I+ Y++AFL WT  +  DF+SSKW +VR TR+ GY  L++  VP  Y++FY V Q +  EF EMAAA++AM+F  L   RT WGLW+L  FR W   SIDAL+ + IEY L+                 + +I D +LV   +++NQ+L G+    L   +
Sbjct:    2 VDLEALSNLVWFVISTYVSAFLTWTVLTNTDFMSSKWVSVRRTRKAGYRFLLWKFVPMLYVIFYGVVQWKAGEFKEMAAAVIAMVFTALIGLRTVWGLWKLREFRWWAVKSIDALEAVQIEYSLLWLHKMREVHDFWLLDLSSEEIVDEILVYGKIVENQILRGDLQCFLKFEE 175          
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3J4K5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4K5_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 2.080e-33
Identity = 64/150 (42.67%), Postives = 97/150 (64.67%), Query Frame = 0
Query:    5 NLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYINLIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEYRLVKTQYTDAA-QIADRMLVNDSVIDNQLLHG 153
            +LA+N F I++AY+ AFLPW    A DFI  +WK++  T REG I+L+  + P  +ILFY   QA  +++ E+ A+ VA+LF+LLH  RT WGL QL     W ++SI  L  MG+ Y+       D    +A++MLV+++++DNQ++HG
Sbjct:    4 DLADNIFFILSAYLLAFLPWAVLDASDFIGPEWKSISATWREGIIHLLVVLFPISFILFYIFIQASARDYKEVFASSVALLFSLLHLARTVWGLAQLYELHRWARSSICNLRHMGVYYKPSDGHVLDHPYDLANKMLVSETLVDNQIIHG 153          
BLAST of Gcaud2302.t1 vs. uniprot
Match: A0A2V3IYE0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYE0_9FLOR)

HSP 1 Score: 103 bits (256), Expect = 1.870e-22
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 0
Query:   60 YILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQLNYFRHWCKTSIDALDTMGIEYRLVKTQYTDAAQ--------IADRMLVNDSVIDNQLLHGNTPVLLALRQSH 165
            YILFY   Q +G++  E   A++A+LFALLH  R+ WGLWQL+ FR WC  SIDAL  MG+ +R    +  +  Q        +AD+ML N++++DNQ+ HG+T   +    +H
Sbjct:    2 YILFYAATQFKGEDPREGCTAIIALLFALLHGARSAWGLWQLHVFRTWCAKSIDALGAMGVPFRFSNEERRERVQRREMTQWEMADQMLANNTMVDNQITHGDTVSHIKFGNTH 115          
The following BLAST results are available for this feature:
BLAST of Gcaud2302.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IIK8_9FLOR6.830e-5553.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IEX5_9FLOR2.160e-4752.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4P0_9FLOR1.410e-4649.69Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3IY16_9FLOR2.740e-4447.65Cytochrome c oxidase assembly factor 7 n=1 Tax=Gra... [more]
R7QDX8_CHOCR4.090e-3756.45Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IIQ1_9FLOR1.400e-3439.08Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J4K5_9FLOR2.080e-3342.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IYE0_9FLOR1.870e-2242.11Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..99
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 100..179
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 72..76
NoneNo IPR availableTMHMMTMhelixcoord: 10..27
NoneNo IPR availableTMHMMTMhelixcoord: 77..99
NoneNo IPR availableTMHMMTMhelixcoord: 48..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:868..1407 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2302.t1Gcaud2302.t1Gracilaria caudata M_176_S67 malemRNANODE_838_length_17196_cov_5.011166 868..1407 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2302.t1 ID=Gcaud2302.t1|Name=Gcaud2302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYIN
LIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQ
LNYFRHWCKTSIDALDTMGIEYRLVKTQYTDAAQIADRMLVNDSVIDNQL
LHGNTPVLLALRQSHSTNSGSSCEPKSCR*
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