Gcaud2302.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2302.t1
Unique NameGcaud2302.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:868..1407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2302Gcaud2302Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 868..1407 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2302.t1.stop1Gcaud2302.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_838_length_17196_cov_5.011166 868..870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2302.t1.CDS1Gcaud2302.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 868..1407 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2302.t1.exon1Gcaud2302.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 868..1407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2302.t1.start1Gcaud2302.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 1405..1407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2302.t1Gcaud2302.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 868..1407 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2302.t1 ID=Gcaud2302.t1|Name=Gcaud2302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYIN
LIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQ
LNYFRHWCKTSIDALDTMGIEYRLVKTQYTDAAQIADRMLVNDSVIDNQL
LHGNTPVLLALRQSHSTNSGSSCEPKSCR*
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spliced messenger RNA

>Gcaud2302.t1 ID=Gcaud2302.t1|Name=Gcaud2302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:868..1407- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTCGCAAACCTTGCCGAAAATCCCTTCATAATCATTGCCGCGTA
CATCGCAGCGTTTTTGCCGTGGACCGCGTTTTCCGCAAAAGACTTCATAA
GTTCCAAATGGAAAACCGTGAGAACAACTCGTCGTGAGGGATATATTAAT
CTCATCTTCTCAATCGTACCAGCTGGCTACATTCTGTTTTACTGTGTAGC
ACAAGCAAGAGGCAAAGAATTTCCGGAAATGGCCGCCGCCTTGGTGGCCA
TGCTATTTGCCTTGTTACACGCCTGTCGCACCACTTGGGGGTTGTGGCAA
CTCAACTATTTTCGCCACTGGTGCAAAACAAGTATTGATGCTCTTGACAC
CATGGGAATTGAGTATCGTCTCGTCAAGACGCAGTACACCGATGCTGCAC
AGATTGCCGATCGGATGCTTGTCAATGATTCTGTCATTGATAACCAGCTT
CTTCACGGGAACACCCCTGTGCTTCTTGCGTTACGGCAAAGCCACTCAAC
AAACTCAGGAAGTTCTTGTGAACCAAAGAGCTGTCGATAG
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protein sequence of Gcaud2302.t1

>Gcaud2302.t1 ID=Gcaud2302.t1|Name=Gcaud2302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MSLANLAENPFIIIAAYIAAFLPWTAFSAKDFISSKWKTVRTTRREGYIN
LIFSIVPAGYILFYCVAQARGKEFPEMAAALVAMLFALLHACRTTWGLWQ
LNYFRHWCKTSIDALDTMGIEYRLVKTQYTDAAQIADRMLVNDSVIDNQL
LHGNTPVLLALRQSHSTNSGSSCEPKSCR*
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:868..1407-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2302.t1 ID=Gcaud2302.t1|Name=Gcaud2302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:868..1407- (Gracilaria caudata M_176_S67 male)
ATGTCCCTCGCAAACCTTGCCGAAAATCCCTTCATAATCATTGCCGCGTA
CATCGCAGCGTTTTTGCCGTGGACCGCGTTTTCCGCAAAAGACTTCATAA
GTTCCAAATGGAAAACCGTGAGAACAACTCGTCGTGAGGGATATATTAAT
CTCATCTTCTCAATCGTACCAGCTGGCTACATTCTGTTTTACTGTGTAGC
ACAAGCAAGAGGCAAAGAATTTCCGGAAATGGCCGCCGCCTTGGTGGCCA
TGCTATTTGCCTTGTTACACGCCTGTCGCACCACTTGGGGGTTGTGGCAA
CTCAACTATTTTCGCCACTGGTGCAAAACAAGTATTGATGCTCTTGACAC
CATGGGAATTGAGTATCGTCTCGTCAAGACGCAGTACACCGATGCTGCAC
AGATTGCCGATCGGATGCTTGTCAATGATTCTGTCATTGATAACCAGCTT
CTTCACGGGAACACCCCTGTGCTTCTTGCGTTACGGCAAAGCCACTCAAC
AAACTCAGGAAGTTCTTGTGAACCAAAGAGCTGTCGATAG
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:868..1407-

>Gcaud2302.t1 ID=Gcaud2302.t1|Name=Gcaud2302.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:868..1407- (Gracilaria caudata M_176_S67 male)
ATGTCCCTCGCAAACCTTGCCGAAAATCCCTTCATAATCATTGCCGCGTA
CATCGCAGCGTTTTTGCCGTGGACCGCGTTTTCCGCAAAAGACTTCATAA
GTTCCAAATGGAAAACCGTGAGAACAACTCGTCGTGAGGGATATATTAAT
CTCATCTTCTCAATCGTACCAGCTGGCTACATTCTGTTTTACTGTGTAGC
ACAAGCAAGAGGCAAAGAATTTCCGGAAATGGCCGCCGCCTTGGTGGCCA
TGCTATTTGCCTTGTTACACGCCTGTCGCACCACTTGGGGGTTGTGGCAA
CTCAACTATTTTCGCCACTGGTGCAAAACAAGTATTGATGCTCTTGACAC
CATGGGAATTGAGTATCGTCTCGTCAAGACGCAGTACACCGATGCTGCAC
AGATTGCCGATCGGATGCTTGTCAATGATTCTGTCATTGATAACCAGCTT
CTTCACGGGAACACCCCTGTGCTTCTTGCGTTACGGCAAAGCCACTCAAC
AAACTCAGGAAGTTCTTGTGAACCAAAGAGCTGTCGATAG
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