Gcaud2306.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2306.t1
Unique NameGcaud2306.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:6812..7843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2306Gcaud2306Gracilaria caudata M_176_S67 malegeneNODE_838_length_17196_cov_5.011166 6812..7843 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2306.t1.stop1Gcaud2306.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_838_length_17196_cov_5.011166 6812..6814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2306.t1.CDS1Gcaud2306.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_838_length_17196_cov_5.011166 6812..7843 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2306.t1.exon1Gcaud2306.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_838_length_17196_cov_5.011166 6812..7843 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2306.t1.start1Gcaud2306.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_838_length_17196_cov_5.011166 7841..7843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2306.t1Gcaud2306.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_838_length_17196_cov_5.011166 6812..7843 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2306.t1 ID=Gcaud2306.t1|Name=Gcaud2306.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=344bp
MSHDSAAQHTPPALTATAFGAFASLPAYEFDFDYRGQSLNTAMPPLHTPS
SLVDDFDSYMFPDTDTTHSSSQRSQSSQPFSNTLHPSPSSIDWAAVQHAQ
LFSPKGSIIDVDKLYTGYCKFSVLIFVPRHAVELCALVYGKVAHLLLQAG
ARLCFITAWQPAQAALFLSRFERVSPCPATIVCDPHAHLFSAFAFTRSPL
RALFAANKVSAPMRQGMRNAFSTVSYRAQNRDIANTTVPSKRLKCGAVVM
STLRGYEKRPYIYYISEEHPSTGVGCYMDVLSACGVNEAFVPDVDVAQVY
ARFNNMRSTSIKARHADEKEANRLKNHRLRGSRKNDLRNALKG*
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spliced messenger RNA

>Gcaud2306.t1 ID=Gcaud2306.t1|Name=Gcaud2306.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:6812..7843- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCATGATAGCGCTGCTCAGCATACGCCGCCGGCGCTCACTGCCAC
AGCGTTTGGAGCGTTTGCTTCCTTACCGGCGTATGAGTTTGACTTTGATT
ACCGAGGACAGTCTCTCAACACCGCCATGCCGCCATTGCACACGCCTTCC
TCACTAGTTGATGACTTCGATTCCTATATGTTTCCGGACACCGATACCAC
TCACTCCTCCTCACAACGTTCGCAATCTTCTCAACCCTTCTCGAATACCC
TTCATCCATCTCCTTCATCCATTGATTGGGCCGCTGTTCAGCACGCACAG
CTCTTCTCTCCTAAAGGCTCCATCATCGACGTGGACAAACTGTACACCGG
CTACTGCAAGTTCTCCGTGCTCATCTTCGTTCCGCGCCACGCTGTCGAGT
TATGCGCGCTTGTATACGGAAAGGTGGCACATTTATTGCTACAAGCAGGA
GCCAGATTATGTTTCATAACTGCGTGGCAACCCGCACAAGCCGCTCTATT
TCTGTCGCGTTTCGAGCGCGTTAGTCCTTGTCCCGCAACCATTGTCTGTG
ACCCTCATGCACATCTATTCTCGGCCTTTGCCTTCACAAGATCGCCCTTG
AGAGCTTTGTTTGCTGCCAATAAGGTGTCGGCGCCCATGCGACAGGGCAT
GAGGAATGCTTTTAGTACCGTGTCATACCGCGCTCAGAACCGTGACATTG
CCAACACTACCGTGCCGTCCAAGCGCCTCAAGTGTGGTGCTGTGGTCATG
TCCACCTTGCGTGGCTACGAGAAGAGACCTTATATCTATTACATCAGTGA
GGAACATCCGTCCACTGGCGTTGGTTGTTACATGGACGTTCTTAGTGCGT
GTGGTGTCAACGAGGCTTTTGTCCCGGATGTAGATGTTGCACAGGTGTAC
GCTCGCTTCAATAACATGCGAAGTACTAGTATTAAGGCGAGACACGCCGA
TGAAAAGGAAGCCAATCGACTCAAGAATCACCGCCTCCGTGGATCTAGGA
AGAATGATTTGCGCAATGCTTTGAAGGGTTGA
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protein sequence of Gcaud2306.t1

>Gcaud2306.t1 ID=Gcaud2306.t1|Name=Gcaud2306.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=344bp
MSHDSAAQHTPPALTATAFGAFASLPAYEFDFDYRGQSLNTAMPPLHTPS
SLVDDFDSYMFPDTDTTHSSSQRSQSSQPFSNTLHPSPSSIDWAAVQHAQ
LFSPKGSIIDVDKLYTGYCKFSVLIFVPRHAVELCALVYGKVAHLLLQAG
ARLCFITAWQPAQAALFLSRFERVSPCPATIVCDPHAHLFSAFAFTRSPL
RALFAANKVSAPMRQGMRNAFSTVSYRAQNRDIANTTVPSKRLKCGAVVM
STLRGYEKRPYIYYISEEHPSTGVGCYMDVLSACGVNEAFVPDVDVAQVY
ARFNNMRSTSIKARHADEKEANRLKNHRLRGSRKNDLRNALKG*
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mRNA from alignment at NODE_838_length_17196_cov_5.011166:6812..7843-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2306.t1 ID=Gcaud2306.t1|Name=Gcaud2306.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:6812..7843- (Gracilaria caudata M_176_S67 male)
ATGTCGCATGATAGCGCTGCTCAGCATACGCCGCCGGCGCTCACTGCCAC
AGCGTTTGGAGCGTTTGCTTCCTTACCGGCGTATGAGTTTGACTTTGATT
ACCGAGGACAGTCTCTCAACACCGCCATGCCGCCATTGCACACGCCTTCC
TCACTAGTTGATGACTTCGATTCCTATATGTTTCCGGACACCGATACCAC
TCACTCCTCCTCACAACGTTCGCAATCTTCTCAACCCTTCTCGAATACCC
TTCATCCATCTCCTTCATCCATTGATTGGGCCGCTGTTCAGCACGCACAG
CTCTTCTCTCCTAAAGGCTCCATCATCGACGTGGACAAACTGTACACCGG
CTACTGCAAGTTCTCCGTGCTCATCTTCGTTCCGCGCCACGCTGTCGAGT
TATGCGCGCTTGTATACGGAAAGGTGGCACATTTATTGCTACAAGCAGGA
GCCAGATTATGTTTCATAACTGCGTGGCAACCCGCACAAGCCGCTCTATT
TCTGTCGCGTTTCGAGCGCGTTAGTCCTTGTCCCGCAACCATTGTCTGTG
ACCCTCATGCACATCTATTCTCGGCCTTTGCCTTCACAAGATCGCCCTTG
AGAGCTTTGTTTGCTGCCAATAAGGTGTCGGCGCCCATGCGACAGGGCAT
GAGGAATGCTTTTAGTACCGTGTCATACCGCGCTCAGAACCGTGACATTG
CCAACACTACCGTGCCGTCCAAGCGCCTCAAGTGTGGTGCTGTGGTCATG
TCCACCTTGCGTGGCTACGAGAAGAGACCTTATATCTATTACATCAGTGA
GGAACATCCGTCCACTGGCGTTGGTTGTTACATGGACGTTCTTAGTGCGT
GTGGTGTCAACGAGGCTTTTGTCCCGGATGTAGATGTTGCACAGGTGTAC
GCTCGCTTCAATAACATGCGAAGTACTAGTATTAAGGCGAGACACGCCGA
TGAAAAGGAAGCCAATCGACTCAAGAATCACCGCCTCCGTGGATCTAGGA
AGAATGATTTGCGCAATGCTTTGAAGGGTTGA
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Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:6812..7843-

>Gcaud2306.t1 ID=Gcaud2306.t1|Name=Gcaud2306.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1032bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:6812..7843- (Gracilaria caudata M_176_S67 male)
ATGTCGCATGATAGCGCTGCTCAGCATACGCCGCCGGCGCTCACTGCCAC
AGCGTTTGGAGCGTTTGCTTCCTTACCGGCGTATGAGTTTGACTTTGATT
ACCGAGGACAGTCTCTCAACACCGCCATGCCGCCATTGCACACGCCTTCC
TCACTAGTTGATGACTTCGATTCCTATATGTTTCCGGACACCGATACCAC
TCACTCCTCCTCACAACGTTCGCAATCTTCTCAACCCTTCTCGAATACCC
TTCATCCATCTCCTTCATCCATTGATTGGGCCGCTGTTCAGCACGCACAG
CTCTTCTCTCCTAAAGGCTCCATCATCGACGTGGACAAACTGTACACCGG
CTACTGCAAGTTCTCCGTGCTCATCTTCGTTCCGCGCCACGCTGTCGAGT
TATGCGCGCTTGTATACGGAAAGGTGGCACATTTATTGCTACAAGCAGGA
GCCAGATTATGTTTCATAACTGCGTGGCAACCCGCACAAGCCGCTCTATT
TCTGTCGCGTTTCGAGCGCGTTAGTCCTTGTCCCGCAACCATTGTCTGTG
ACCCTCATGCACATCTATTCTCGGCCTTTGCCTTCACAAGATCGCCCTTG
AGAGCTTTGTTTGCTGCCAATAAGGTGTCGGCGCCCATGCGACAGGGCAT
GAGGAATGCTTTTAGTACCGTGTCATACCGCGCTCAGAACCGTGACATTG
CCAACACTACCGTGCCGTCCAAGCGCCTCAAGTGTGGTGCTGTGGTCATG
TCCACCTTGCGTGGCTACGAGAAGAGACCTTATATCTATTACATCAGTGA
GGAACATCCGTCCACTGGCGTTGGTTGTTACATGGACGTTCTTAGTGCGT
GTGGTGTCAACGAGGCTTTTGTCCCGGATGTAGATGTTGCACAGGTGTAC
GCTCGCTTCAATAACATGCGAAGTACTAGTATTAAGGCGAGACACGCCGA
TGAAAAGGAAGCCAATCGACTCAAGAATCACCGCCTCCGTGGATCTAGGA
AGAATGATTTGCGCAATGCTTTGAAGGGTTGA
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