Gcaud2301.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2301.t1
Unique NameGcaud2301.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length269
Homology
BLAST of Gcaud2301.t1 vs. uniprot
Match: A0A2V3J4P0_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4P0_9FLOR)

HSP 1 Score: 152 bits (383), Expect = 2.660e-39
Identity = 93/217 (42.86%), Postives = 134/217 (61.75%), Query Frame = 0
Query:   54 FCAVAFV-DVIRYSLGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQWISSFKVAPDPDDDKGPDHGDTKDIREQRSAYFASEVLASA----VMQLWPELSHSSSPSTS--PFFWNLWNEDSNMALGRLLEDELLRSAVLNGRGLLFGVFHTLKRLTQRRRN---RVSYRIYHRHLSSVKACLSIRDEFCAQIDDFDVEKLEWLTIILNLGSVALQ 260
            FC +  + D +R+S+GL+T GK++QVP+QP  V++NW++VFAAQGL+ W++ FKV+ + +   G     TKD  E +S +FASE+LAS     VMQL PEL      +    P  W  W + S M  GRLL+ ELL++AV  G  L FGV H  K   + R++    + Y  + R LSS    L ++ EFC++I + DVE LEWLTI+L +G  +L+
Sbjct:  205 FCTIIMLWDGVRFSIGLETCGKLRQVPIQPVNVYVNWAIVFAAQGLRTWLAEFKVSLNRNR-HGERRTGTKDWEELKS-HFASEILASVFSPCVMQLCPELEGGRHRNNKMRPMLWIGWKKGSVMHSGRLLKKELLKNAVSCGEVLPFGVAH--KAFLRHRKDSDAEIGYTEFSRQLSSKIRSLDVKREFCSEIQNLDVEMLEWLTILLYMGRRSLK 417          
BLAST of Gcaud2301.t1 vs. uniprot
Match: A0A2V3IYE0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYE0_9FLOR)

HSP 1 Score: 131 bits (329), Expect = 1.870e-31
Identity = 76/228 (33.33%), Postives = 116/228 (50.88%), Query Frame = 0
Query:   28 WDYIEFSECLLIWVLEFTSFAGLFVFFCAVAFVDVIRYSLGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQWISSFKVAPDPDDDKGPDHGDTKDIREQRSAYFASEVLASAVMQLWPELSHSSSPSTSPFFWNLWNEDSNMALGRLLEDELLRSAVLNGRGLLFGVFHTLKRLTQRRRNRVSYRIYHRHLSSVKACLSIRDEFCAQIDDFDVEKLEWLTIILNLG 255
            W+Y++       W L  T+          V   D +R+ +G  T GK++QVP  P EVW+NWS+VFAAQGL+ W+S F ++      K P  G+ +D                   +LW EL            W+ W E S+M  G++++ ELL+ A+ +G GL FGV H ++   ++  + V Y  Y  HL S    L ++DEF ++    +VE +EWLTI+L +G
Sbjct:  135 WNYVKMCA----WTLTTTT----------VMLADNLRFFVGAGTIGKVRQVPKSPVEVWINWSIVFAAQGLEDWMSEFCIS------KNPAAGEEQD-------------------ELWTELEGKEKRKMEQTLWSGWKEGSSMHGGQIVKGELLKEAMKSGVGLPFGVAHLIEGEKKKLASDVRYGAYSEHLESKARKLEVKDEFRSEARKLNVEMMEWLTILLYMG 323          
BLAST of Gcaud2301.t1 vs. uniprot
Match: A0A2V3IY16_9FLOR (Cytochrome c oxidase assembly factor 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY16_9FLOR)

HSP 1 Score: 132 bits (333), Expect = 2.480e-31
Identity = 72/197 (36.55%), Postives = 106/197 (53.81%), Query Frame = 0
Query:   67 LGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQWISSFKVAPDPDDDKGPDHGDTKDIREQRSAYFASEVLASAVMQLWPELSHSSSPSTSPFFWNLWNEDSNMALGRLLEDELLRSAVLNGRGLLFGVFHTLKRLTQRRRNRV---SYRIYHRHLSSVKACLSIRDEFCAQIDDFDVEKLEWLTIILNLGSVALQ 260
            +G     +  QVPL+P E+W+ W+  FAAQGL++W++ F+    PD           +   QR  YF +EVLASA + LW E       ++SPF W+ W EDS+M  GRL++ EL   A+ +G  L FG  H      Q     +   SY  Y   L+     L ++  +  +I  FDV  LEWLTI+L+LG+++L+
Sbjct:  213 IGQGKRRRFTQVPLRPVEIWVRWASTFAAQGLKEWMTEFEAVLGPDSQSPRSRATATEKLFQRGRYFGAEVLASASLHLWSEF--HPGVASSPFLWDAWKEDSHMTDGRLVKQELFHEALRSGEALPFGTPHLRDLEEQEECEELVSFSYEPYRDFLTEFITELPVKSIYTTEIRSFDVGMLEWLTILLHLGTLSLR 407          
BLAST of Gcaud2301.t1 vs. uniprot
Match: A0A2V3IIK8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIK8_9FLOR)

HSP 1 Score: 112 bits (279), Expect = 2.160e-25
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = 0
Query:   52 VFFCAVAFVDVIRYSLGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQWISSFKVAPDPDDDKGPDHGDTKDIRE--QRSAYFASEVLASAVMQLWPELSHSSSPSTSPFFWNLWNEDSNM 171
            +F   V   D +R+S+G+  +GK++QVP +P EVW+NW++VFAAQGL+ W+S F V  +P D K  D    K ++E  +R++YFASEVL++ +MQLWPEL         P  W+ W+E S M
Sbjct:  204 IFCVGVMLCDSLRFSVGIGPAGKLRQVPNRPAEVWINWAIVFAAQGLRAWMSEFSVLANPRDRKEHDES-RKGLKEWEKRASYFASEVLSTCIMQLWPEL-QGEKKRMEPMLWSGWDETSTM 323          
The following BLAST results are available for this feature:
BLAST of Gcaud2301.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J4P0_9FLOR2.660e-3942.86Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3IYE0_9FLOR1.870e-3133.33Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IY16_9FLOR2.480e-3136.55Cytochrome c oxidase assembly factor 7 n=1 Tax=Gra... [more]
A0A2V3IIK8_9FLOR2.160e-2545.08Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 130..147
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..200
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..180
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..129
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 201..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..67
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..46
NoneNo IPR availableTMHMMTMhelixcoord: 38..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_838_length_17196_cov_5.011166contigNODE_838_length_17196_cov_5.011166:2..806 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2301.t1Gcaud2301.t1Gracilaria caudata M_176_S67 malemRNANODE_838_length_17196_cov_5.011166 2..806 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2301.t1 ID=Gcaud2301.t1|Name=Gcaud2301.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=269bp
MPRLRLDSYMAQRLQKPLSCMTLPSLFWDYIEFSECLLIWVLEFTSFAGL
FVFFCAVAFVDVIRYSLGLKTSGKIKQVPLQPEEVWLNWSVVFAAQGLQQ
WISSFKVAPDPDDDKGPDHGDTKDIREQRSAYFASEVLASAVMQLWPELS
HSSSPSTSPFFWNLWNEDSNMALGRLLEDELLRSAVLNGRGLLFGVFHTL
KRLTQRRRNRVSYRIYHRHLSSVKACLSIRDEFCAQIDDFDVEKLEWLTI
ILNLGSVALQHPMNIHPNX
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