Gcaud1775.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1775.t1
Unique Name	Gcaud1775.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	320

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_837_length_17206_cov_4.413380	contig	NODE_837_length_17206_cov_4.413380:15763..16827 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1775	Gcaud1775	Gracilaria caudata M_176_S67 male	gene	NODE_837_length_17206_cov_4.413380 15763..16827 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1775.t1	Gcaud1775.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_837_length_17206_cov_4.413380 15763..16827 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1775.t1.stop1	Gcaud1775.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_837_length_17206_cov_4.413380 15763..15765 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1775.t1.CDS1	Gcaud1775.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 15763..16229 -
Gcaud1775.t1.CDS2	Gcaud1775.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 16335..16827 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1775.t1.exon1	Gcaud1775.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 15763..16229 -
Gcaud1775.t1.exon2	Gcaud1775.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 16335..16827 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1775.t1.intron1	Gcaud1775.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_837_length_17206_cov_4.413380 16230..16334 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1775.t1.start1	Gcaud1775.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_837_length_17206_cov_4.413380 16825..16827 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_837_length_17206_cov_4.413380:15763..16827-
coding sequence from alignment at NODE_837_length_17206_cov_4.413380:15763..16827-

mRNA sequence

>Gcaud1775.t1 ID=Gcaud1775.t1|Name=Gcaud1775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=320bp
LFVPSTAARKRVVNAAICKVVHVAYDSSACHGARRDLVTRSTPCLWRVSV
VSDVIQERHPLVMAQQFPLSSGDVRLLTRLDGCNSTEQCDDEQVDCTYGI
EDPSDAFWWREYNQDIKFVVMMKIGFLSLVFYIAAIVSDGTIFSPHRSSI
AGNVASVLILIALSLLLPAIAIILLNLVIFCVTFLWFFVEQTFSVLVAFL
HFLVGLSLFNLQHTYLCLRQIYFNGSETEYEQHLVVNSERFLQQVRNNWF
LNRVPRCFLENADLAVRTVLSEHLHDQVEFIPYMDMDSFGSEEDEEAITT
RTDPDVNETTALLERASGA*

spliced messenger RNA

>Gcaud1775.t1 ID=Gcaud1775.t1|Name=Gcaud1775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=960bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:15763..16827- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTTGTGCCTTCTACGGCTGCTAGGAAACGCGTTGTGAATGCTGCCAT
TTGCAAGGTGGTGCATGTTGCGTATGATTCCTCTGCTTGCCATGGGGCTC
GTCGTGATTTGGTCACCAGGTCTACGCCGTGTTTGTGGCGTGTGTCGGTT
GTGAGCGATGTTATTCAGGAGAGACATCCGCTTGTGATGGCGCAGCAGTT
TCCTTTGTCCTCCGGTGATGTGCGCTTGTTGACGCGCTTAGACGGATGCA
ATTCTACCGAGCAATGTGATGATGAGCAGGTGGACTGCACGTATGGAATC
GAAGATCCGTCCGATGCGTTCTGGTGGCGCGAGTATAATCAAGACATTAA
GTTTGTTGTCATGATGAAGATCGGTTTTCTGTCTCTGGTGTTCTATATTG
CAGCCATCGTCAGCGACGGCACGATCTTTTCTCCTCATCGTTCTTCTATT
GCTGGTAATGTGGCAAGCGTTCTCATCTTAATTGCGCTGTCGTTGCTTCT
ACCTGCCATCGCTATTATTCTTCTCAACTTGGTCATCTTCTGCGTTACGT
TCCTTTGGTTTTTCGTGGAACAAACTTTTTCCGTGCTCGTTGCCTTTCTA
CATTTTCTTGTTGGTTTATCCTTGTTCAATTTGCAACATACTTATCTTTG
CCTTCGTCAAATTTACTTTAACGGCAGTGAGACTGAATATGAGCAGCATC
TTGTTGTGAACAGTGAACGTTTTCTACAGCAAGTGCGAAACAATTGGTTC
TTGAACAGAGTACCGCGTTGCTTCCTTGAGAATGCCGATCTCGCAGTACG
CACCGTGTTATCAGAGCATCTTCATGATCAAGTCGAGTTCATCCCCTACA
TGGACATGGACTCGTTCGGGAGTGAAGAAGATGAGGAAGCAATCACCACA
CGAACTGACCCAGATGTTAACGAAACAACAGCTCTTTTGGAAAGAGCCTC
TGGTGCCTAA

protein sequence of Gcaud1775.t1

>Gcaud1775.t1 ID=Gcaud1775.t1|Name=Gcaud1775.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=320bp
LFVPSTAARKRVVNAAICKVVHVAYDSSACHGARRDLVTRSTPCLWRVSV
VSDVIQERHPLVMAQQFPLSSGDVRLLTRLDGCNSTEQCDDEQVDCTYGI
EDPSDAFWWREYNQDIKFVVMMKIGFLSLVFYIAAIVSDGTIFSPHRSSI
AGNVASVLILIALSLLLPAIAIILLNLVIFCVTFLWFFVEQTFSVLVAFL
HFLVGLSLFNLQHTYLCLRQIYFNGSETEYEQHLVVNSERFLQQVRNNWF
LNRVPRCFLENADLAVRTVLSEHLHDQVEFIPYMDMDSFGSEEDEEAITT
RTDPDVNETTALLERASGA*

mRNA from alignment at NODE_837_length_17206_cov_4.413380:15763..16827-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1775.t1 ID=Gcaud1775.t1|Name=Gcaud1775.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:15763..16827- (Gracilaria caudata M_176_S67 male)
CTGTTTGTGCCTTCTACGGCTGCTAGGAAACGCGTTGTGAATGCTGCCAT
TTGCAAGGTGGTGCATGTTGCGTATGATTCCTCTGCTTGCCATGGGGCTC
GTCGTGATTTGGTCACCAGGTCTACGCCGTGTTTGTGGCGTGTGTCGGTT
GTGAGCGATGTTATTCAGGAGAGACATCCGCTTGTGATGGCGCAGCAGTT
TCCTTTGTCCTCCGGTGATGTGCGCTTGTTGACGCGCTTAGACGGATGCA
ATTCTACCGAGCAATGTGATGATGAGCAGGTGGACTGCACGTATGGAATC
GAAGATCCGTCCGATGCGTTCTGGTGGCGCGAGTATAATCAAGACATTAA
GTTTGTTGTCATGATGAAGATCGGTTTTCTGTCTCTGGTGTTCTATATTG
CAGCCATCGTCAGCGACGGCACGATCTTTTCTCCTCATCGTTCTTCTATT
GCTGGTAATGTGGCAAGCGTTCTCATCTTAATTGCGCTGTCGTGTTCGTT
GTACATAAGAATTGTGCCAAGAAAGATGCAATATTCTTTGCTTGGCGGAG
ACCTTTTCCAAACTACCGCATTTCTTTTAATCATTCTAACTACCGCAGTG
CTTCTACCTGCCATCGCTATTATTCTTCTCAACTTGGTCATCTTCTGCGT
TACGTTCCTTTGGTTTTTCGTGGAACAAACTTTTTCCGTGCTCGTTGCCT
TTCTACATTTTCTTGTTGGTTTATCCTTGTTCAATTTGCAACATACTTAT
CTTTGCCTTCGTCAAATTTACTTTAACGGCAGTGAGACTGAATATGAGCA
GCATCTTGTTGTGAACAGTGAACGTTTTCTACAGCAAGTGCGAAACAATT
GGTTCTTGAACAGAGTACCGCGTTGCTTCCTTGAGAATGCCGATCTCGCA
GTACGCACCGTGTTATCAGAGCATCTTCATGATCAAGTCGAGTTCATCCC
CTACATGGACATGGACTCGTTCGGGAGTGAAGAAGATGAGGAAGCAATCA
CCACACGAACTGACCCAGATGTTAACGAAACAACAGCTCTTTTGGAAAGA
GCCTCTGGTGCCTAA

Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:15763..16827-

>Gcaud1775.t1 ID=Gcaud1775.t1|Name=Gcaud1775.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=960bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:15763..16827- (Gracilaria caudata M_176_S67 male)
CTGTTTGTGCCTTCTACGGCTGCTAGGAAACGCGTTGTGAATGCTGCCAT
TTGCAAGGTGGTGCATGTTGCGTATGATTCCTCTGCTTGCCATGGGGCTC
GTCGTGATTTGGTCACCAGGTCTACGCCGTGTTTGTGGCGTGTGTCGGTT
GTGAGCGATGTTATTCAGGAGAGACATCCGCTTGTGATGGCGCAGCAGTT
TCCTTTGTCCTCCGGTGATGTGCGCTTGTTGACGCGCTTAGACGGATGCA
ATTCTACCGAGCAATGTGATGATGAGCAGGTGGACTGCACGTATGGAATC
GAAGATCCGTCCGATGCGTTCTGGTGGCGCGAGTATAATCAAGACATTAA
GTTTGTTGTCATGATGAAGATCGGTTTTCTGTCTCTGGTGTTCTATATTG
CAGCCATCGTCAGCGACGGCACGATCTTTTCTCCTCATCGTTCTTCTATT
GCTGGTAATGTGGCAAGCGTTCTCATCTTAATTGCGCTGTCGTTGCTTCT
ACCTGCCATCGCTATTATTCTTCTCAACTTGGTCATCTTCTGCGTTACGT
TCCTTTGGTTTTTCGTGGAACAAACTTTTTCCGTGCTCGTTGCCTTTCTA
CATTTTCTTGTTGGTTTATCCTTGTTCAATTTGCAACATACTTATCTTTG
CCTTCGTCAAATTTACTTTAACGGCAGTGAGACTGAATATGAGCAGCATC
TTGTTGTGAACAGTGAACGTTTTCTACAGCAAGTGCGAAACAATTGGTTC
TTGAACAGAGTACCGCGTTGCTTCCTTGAGAATGCCGATCTCGCAGTACG
CACCGTGTTATCAGAGCATCTTCATGATCAAGTCGAGTTCATCCCCTACA
TGGACATGGACTCGTTCGGGAGTGAAGAAGATGAGGAAGCAATCACCACA
CGAACTGACCCAGATGTTAACGAAACAACAGCTCTTTTGGAAAGAGCCTC
TGGTGCCTAA