Gcaud1770.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1770.t1
Unique Name	Gcaud1770.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_837_length_17206_cov_4.413380	contig	NODE_837_length_17206_cov_4.413380:6831..7961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	392500.Swoo_2070
Max annot lvl	1236\|Gammaproteobacteria
Evalue	9.85e-33
EggNOG OGs	COG3391@1\|root,COG3391@2\|Bacteria,1QF1E@1224\|Proteobacteria,1TC2K@1236\|Gammaproteobacteria,2QD8G@267890\|Shewanellaceae
Description	amine dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1770	Gcaud1770	Gracilaria caudata M_176_S67 male	gene	NODE_837_length_17206_cov_4.413380 6831..7961 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1770.t1.start1	Gcaud1770.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_837_length_17206_cov_4.413380 6831..6833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1770.t1.CDS1	Gcaud1770.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 6831..7961 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1770.t1.exon1	Gcaud1770.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 6831..7961 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1770.t1.stop1	Gcaud1770.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_837_length_17206_cov_4.413380 7959..7961 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1770.t1	Gcaud1770.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_837_length_17206_cov_4.413380 6831..7961 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+
coding sequence from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+

mRNA sequence

>Gcaud1770.t1 ID=Gcaud1770.t1|Name=Gcaud1770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp
MLESYLLLTLFLSLSVAVYSISFSIHLKPTTRPVHEFSGHVVVANRAEGS
ISIINPETLNVVEHFQLPDDAEPMYFGLSPQKSEIWVGDRNNSRLVILKL
SGRQIIPDGYLDTPEGLFHSMITQVAGEPYPIVWNTCDIANVTVVYDLTS
RRKLAEIPLPREVAALGGVPHDITTNTDYGFVTYLNNADGAGYIASYSAR
TFELIQLKRVAFDPHVAIRDSTKLTVAAQGGEVLLLSIPDLRTLRRDATQ
PSPHGTIITFDIKYLYVTNIADMGENAVVTYNTSTLERVNCPMITTSNPV
PHNPATNLDGSRIFITHSGATSDIVSAFDIGEDGCLKPESEKIVRTGLNP
FGLFILPPAEEEPVCKVRQVRVRGIF*

spliced messenger RNA

>Gcaud1770.t1 ID=Gcaud1770.t1|Name=Gcaud1770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGAATCGTACTTGCTTCTTACCTTGTTTCTTTCATTGAGCGTTGC
AGTATATTCAATTTCGTTCTCAATCCATCTGAAGCCGACAACACGTCCTG
TTCATGAATTCAGTGGCCATGTCGTGGTTGCAAACCGTGCAGAAGGGTCA
ATTTCAATCATCAATCCAGAAACGCTCAATGTAGTTGAGCATTTTCAGCT
CCCAGATGATGCAGAACCAATGTACTTCGGGCTTTCACCACAGAAATCAG
AGATATGGGTGGGAGACCGTAACAACAGCCGTCTGGTGATACTCAAACTT
TCAGGACGTCAAATCATTCCAGACGGGTACTTAGACACTCCTGAAGGATT
GTTTCACTCTATGATCACACAGGTTGCCGGTGAACCGTATCCCATTGTGT
GGAATACGTGCGACATTGCCAATGTGACAGTCGTATATGACCTTACTTCC
CGGCGCAAACTCGCTGAGATTCCGCTGCCGCGTGAAGTTGCTGCTCTTGG
TGGGGTGCCTCACGATATCACTACAAACACAGATTATGGTTTCGTTACGT
ACCTCAATAACGCTGACGGTGCAGGCTATATTGCATCGTACAGCGCTCGC
ACTTTTGAGCTAATTCAACTCAAAAGAGTTGCATTCGATCCGCATGTGGC
CATTCGTGATTCCACAAAGCTGACTGTGGCTGCACAAGGTGGAGAAGTGC
TCCTCTTGTCCATCCCTGATCTGCGAACTTTGCGAAGAGACGCTACTCAG
CCGTCACCACATGGAACGATTATTACGTTCGATATCAAGTATCTCTATGT
CACGAACATTGCCGATATGGGTGAGAATGCAGTTGTAACGTACAATACGT
CTACACTTGAACGTGTCAACTGCCCAATGATAACGACTTCAAATCCGGTC
CCTCACAATCCTGCAACGAATCTTGATGGGTCTAGGATATTCATTACGCA
TTCTGGTGCCACTTCTGACATTGTTTCTGCATTTGATATTGGAGAAGATG
GATGTCTTAAGCCGGAATCTGAAAAAATAGTTCGCACCGGTCTAAATCCG
TTTGGATTGTTTATCCTGCCTCCGGCGGAAGAGGAACCAGTTTGCAAAGT
CCGTCAAGTGCGTGTTCGCGGCATATTCTAG

protein sequence of Gcaud1770.t1

>Gcaud1770.t1 ID=Gcaud1770.t1|Name=Gcaud1770.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=377bp
MLESYLLLTLFLSLSVAVYSISFSIHLKPTTRPVHEFSGHVVVANRAEGS
ISIINPETLNVVEHFQLPDDAEPMYFGLSPQKSEIWVGDRNNSRLVILKL
SGRQIIPDGYLDTPEGLFHSMITQVAGEPYPIVWNTCDIANVTVVYDLTS
RRKLAEIPLPREVAALGGVPHDITTNTDYGFVTYLNNADGAGYIASYSAR
TFELIQLKRVAFDPHVAIRDSTKLTVAAQGGEVLLLSIPDLRTLRRDATQ
PSPHGTIITFDIKYLYVTNIADMGENAVVTYNTSTLERVNCPMITTSNPV
PHNPATNLDGSRIFITHSGATSDIVSAFDIGEDGCLKPESEKIVRTGLNP
FGLFILPPAEEEPVCKVRQVRVRGIF*

mRNA from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1770.t1 ID=Gcaud1770.t1|Name=Gcaud1770.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+ (Gracilaria caudata M_176_S67 male)
ATGCTCGAATCGTACTTGCTTCTTACCTTGTTTCTTTCATTGAGCGTTGC
AGTATATTCAATTTCGTTCTCAATCCATCTGAAGCCGACAACACGTCCTG
TTCATGAATTCAGTGGCCATGTCGTGGTTGCAAACCGTGCAGAAGGGTCA
ATTTCAATCATCAATCCAGAAACGCTCAATGTAGTTGAGCATTTTCAGCT
CCCAGATGATGCAGAACCAATGTACTTCGGGCTTTCACCACAGAAATCAG
AGATATGGGTGGGAGACCGTAACAACAGCCGTCTGGTGATACTCAAACTT
TCAGGACGTCAAATCATTCCAGACGGGTACTTAGACACTCCTGAAGGATT
GTTTCACTCTATGATCACACAGGTTGCCGGTGAACCGTATCCCATTGTGT
GGAATACGTGCGACATTGCCAATGTGACAGTCGTATATGACCTTACTTCC
CGGCGCAAACTCGCTGAGATTCCGCTGCCGCGTGAAGTTGCTGCTCTTGG
TGGGGTGCCTCACGATATCACTACAAACACAGATTATGGTTTCGTTACGT
ACCTCAATAACGCTGACGGTGCAGGCTATATTGCATCGTACAGCGCTCGC
ACTTTTGAGCTAATTCAACTCAAAAGAGTTGCATTCGATCCGCATGTGGC
CATTCGTGATTCCACAAAGCTGACTGTGGCTGCACAAGGTGGAGAAGTGC
TCCTCTTGTCCATCCCTGATCTGCGAACTTTGCGAAGAGACGCTACTCAG
CCGTCACCACATGGAACGATTATTACGTTCGATATCAAGTATCTCTATGT
CACGAACATTGCCGATATGGGTGAGAATGCAGTTGTAACGTACAATACGT
CTACACTTGAACGTGTCAACTGCCCAATGATAACGACTTCAAATCCGGTC
CCTCACAATCCTGCAACGAATCTTGATGGGTCTAGGATATTCATTACGCA
TTCTGGTGCCACTTCTGACATTGTTTCTGCATTTGATATTGGAGAAGATG
GATGTCTTAAGCCGGAATCTGAAAAAATAGTTCGCACCGGTCTAAATCCG
TTTGGATTGTTTATCCTGCCTCCGGCGGAAGAGGAACCAGTTTGCAAAGT
CCGTCAAGTGCGTGTTCGCGGCATATTCTAG

Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+

>Gcaud1770.t1 ID=Gcaud1770.t1|Name=Gcaud1770.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1131bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:6831..7961+ (Gracilaria caudata M_176_S67 male)
ATGCTCGAATCGTACTTGCTTCTTACCTTGTTTCTTTCATTGAGCGTTGC
AGTATATTCAATTTCGTTCTCAATCCATCTGAAGCCGACAACACGTCCTG
TTCATGAATTCAGTGGCCATGTCGTGGTTGCAAACCGTGCAGAAGGGTCA
ATTTCAATCATCAATCCAGAAACGCTCAATGTAGTTGAGCATTTTCAGCT
CCCAGATGATGCAGAACCAATGTACTTCGGGCTTTCACCACAGAAATCAG
AGATATGGGTGGGAGACCGTAACAACAGCCGTCTGGTGATACTCAAACTT
TCAGGACGTCAAATCATTCCAGACGGGTACTTAGACACTCCTGAAGGATT
GTTTCACTCTATGATCACACAGGTTGCCGGTGAACCGTATCCCATTGTGT
GGAATACGTGCGACATTGCCAATGTGACAGTCGTATATGACCTTACTTCC
CGGCGCAAACTCGCTGAGATTCCGCTGCCGCGTGAAGTTGCTGCTCTTGG
TGGGGTGCCTCACGATATCACTACAAACACAGATTATGGTTTCGTTACGT
ACCTCAATAACGCTGACGGTGCAGGCTATATTGCATCGTACAGCGCTCGC
ACTTTTGAGCTAATTCAACTCAAAAGAGTTGCATTCGATCCGCATGTGGC
CATTCGTGATTCCACAAAGCTGACTGTGGCTGCACAAGGTGGAGAAGTGC
TCCTCTTGTCCATCCCTGATCTGCGAACTTTGCGAAGAGACGCTACTCAG
CCGTCACCACATGGAACGATTATTACGTTCGATATCAAGTATCTCTATGT
CACGAACATTGCCGATATGGGTGAGAATGCAGTTGTAACGTACAATACGT
CTACACTTGAACGTGTCAACTGCCCAATGATAACGACTTCAAATCCGGTC
CCTCACAATCCTGCAACGAATCTTGATGGGTCTAGGATATTCATTACGCA
TTCTGGTGCCACTTCTGACATTGTTTCTGCATTTGATATTGGAGAAGATG
GATGTCTTAAGCCGGAATCTGAAAAAATAGTTCGCACCGGTCTAAATCCG
TTTGGATTGTTTATCCTGCCTCCGGCGGAAGAGGAACCAGTTTGCAAAGT
CCGTCAAGTGCGTGTTCGCGGCATATTCTAG