Gcaud1773.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1773.t1
Unique NameGcaud1773.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length280
Homology
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 451 bits (1159), Expect = 1.860e-158
Identity = 219/279 (78.49%), Postives = 250/279 (89.61%), Query Frame = 0
Query:    1 MSNAGFIASTATALWRSSATKISTEAVGERMVSLVWSGRPSSAFTVLYAPVGAKFRSRRVVAHPRVNLTGLRPGVPYEVRVTGDGFDSSTSFTTAATAQPAGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            M + GF+AS+ATALWRSSA KIST+A+GERMVSLVWSG+P+S +TVLY+P+GAKFRSRRVVAHPRVNL GL+PG PY+VRVTGD FDSSTSFTT ATAQ   AV    S+ +LP+TE+SRLEIRVGKI+ECEKHPDAD+LYVEK+DVGEEE RTIVSGLVKY+P+EKM+GR+V+VLCNLKPRAMRGV SHGMLLCASNEDHT+VDPL AP + PIGEL+TF+GHKSAPIDPSNRATKAFDR+A GL TN  GVAMFEDVPF TSAG CFS E ++GSIS
Sbjct:    1 MKSVGFVASSATALWRSSAAKISTDAIGERMVSLVWSGKPASTYTVLYSPIGAKFRSRRVVAHPRVNLKGLKPGTPYDVRVTGDAFDSSTSFTTVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMFEDVPFSTSAGPCFSAENVIGSIS 279          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 268 bits (685), Expect = 2.930e-86
Identity = 148/267 (55.43%), Postives = 181/267 (67.79%), Query Frame = 0
Query:   18 SATKISTEAVGERMVSLVWSGRPSSAFTVLYAPVGAKFRSRRVVAHPRVNLTGLRPGVPYEVRVT---GDGFDSSTSFTT--AATAQPAGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            SA  IS + +G   V L W    S A+ V Y    +   S R V    V L GL PG  Y++ ++        S  SFTT  A T + AGA S+   +E+LP+TE+SRLEIR G +V+C+KHP+AD+LYVE IDVGE+E RTIVSGLVK++  E++ GR V+VLCNLKPR MRG+ S GMLLCASN DH+ VDPLS P E   GELITFDGHKSAPIDP NRATKAFDR+A  L TN DG+A ++D  F T  G C+SP KLVG +S
Sbjct:   26 SADNISFQNIGLGSVLLSWPASGSRAYRVAYKS-DSNPASFRTVTRSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMSAETPESAGAESEK-QAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTNEDGIAQYQDAAFKTPFGPCYSPRKLVGGVS 290          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 266 bits (680), Expect = 6.780e-85
Identity = 147/267 (55.06%), Postives = 178/267 (66.67%), Query Frame = 0
Query:   36 WSG---RPSSAFTVLYAPV---GAKFRSRRVVAHPRVNLTGLRPGVPYEVRVT---GDGFDS--STSFTTAATA---------QPAGAVSKDG---SSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            W G     S  F V Y+PV    A   S R V+ P V L G+RP V Y   +    G   +   +T F T A +          P G  + +G   S  + P+TE SRLEIRVG+I+ECEKHPDAD+LYVEK+DVGE E RTIVSGLVKYVP+++MIGR V+VLCNLKPRAMRGV S GMLLCASNEDHT VDPL+AP + PIG LIT  GH+SAP++  NRA+KAFDR+AA  +T+ DG+A  ED  F T  G C+SP KL GS+S
Sbjct:   68 WDGSREEASHGFRVRYSPVEMAAAGIWSWRTVSQPMVRLAGMRPAVSYTAGIQPLFGSAANEWRTTQFRTHAISGGEIDAVGQDPVGVPAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVGEPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDRVAAQFRTDGDGIAYVEDAAFSTPNGPCYSPRKLQGSVS 334          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 251 bits (642), Expect = 1.430e-80
Identity = 118/169 (69.82%), Postives = 146/169 (86.39%), Query Frame = 0
Query:  111 EELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            EELP+TE+SRLEIRVGK+VECE+HPDAD+LYVEK+DVGE+E RTIVSGLV ++  E++ GR VIVLCNLKPRAMRG+ SHGMLLCASNEDHT VDPL+AP +A IG LITF+GH++AP+D  NRA+KAFD++A+   T++DG+A F   PF+T AGAC+SP KL GS+S
Sbjct:   64 EELPLTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNATPFMTEAGACYSPAKLQGSVS 232          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 243 bits (620), Expect = 6.940e-77
Identity = 128/224 (57.14%), Postives = 157/224 (70.09%), Query Frame = 0
Query:   57 SRRVVAHPRVNLTGLRPGVPYEVRVTGDGFDSSTSFTTAATAQPAGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEE-LRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            SR V    R    G  PG   E    G G    +S    + A    A       E LP+TE+SRLEIRVGKI++CEKHP+ADSLYVE++DVG+E   R IVSGLV +VP+E+M+ R VIVLCNLKPR MRG+ SHGMLLCASNEDH+ VDPL+AP   PIG L+TF+GH+S P    NRA+KAFD++A  L+T++ GVAMFE VPF T +G CFSP+KLVG +S
Sbjct:   41 SREVWRSRRCGHVGAFPGATRE----GAGRMRMSSLEDGSAALETAA---GNEGESLPLTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGDESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMFEQVPFATPSGPCFSPKKLVGPVS 257          
BLAST of Gcaud1773.t1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 7.610e-59
Identity = 115/244 (47.13%), Postives = 149/244 (61.07%), Query Frame = 0
Query:   37 SGRPSSAFTVLYAPVGAKFRSRRVVAHPRVNLTGLRPGVPYEVRVTGDGFDSSTSFTTAATAQPAGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEE-LRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            S  PS A+ + Y+  G   R           + GL  G  Y+V V     +              G V +    E   +TE+SRLEIR GKI+E  +HP+AD LYVEKID+GE +  RTIVSGLVKY   E+++GR V+VL NLKPRA++G+ SHGMLLCASNEDHT+V PLS P    +GELITF+GH++AP  P NRA KAFDR+A  L    D +A ++ +PF+TS G   +   + GSIS
Sbjct:  122 STTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGE---LTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTT--GMAGSIS 360          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.770e-58
Identity = 107/193 (55.44%), Postives = 132/193 (68.39%), Query Frame = 0
Query:   88 SSTSFTTAATAQPAGAVSKDGSSEEL-PMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            SS  F     ++P    +K+ ++     + E SRLEIRVGKIV+   HPDAD LYVEKID GE+E RTIVSGLVKY+  E ++ R+V+VL NLKPRAMRG+ SHGMLLCASNEDH+ V PLS P  +  GELIT +G  S P++P NRA+KAFD++A  L  N D  A F+  PFLT  G C S  K  G+IS
Sbjct:   55 SSALFNAPEVSEPVDTDAKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKPFLTPNGPCTSTMK--GAIS 245          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 191 bits (484), Expect = 6.380e-57
Identity = 97/166 (58.43%), Postives = 125/166 (75.30%), Query Frame = 0
Query:  115 MTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEE-LRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSAGACFSPEKLVGSIS 279
            +TE+SRLEIRVGKIVE  +HP+AD LYVEKID+GE    RTIVSGLV++  V++++  NVIVLCNLKPRA++G+ S+GM+LC +++D T VDPL  P +APIG+LITF+GH S P++P NRATKAF +IA G   N  GVA +  +PF T  G   S   L+G IS
Sbjct:   52 LTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLGEPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNGIPFSTPNGPVTS--TLIGKIS 215          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 2.730e-55
Identity = 101/161 (62.73%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  115 MTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKT-----NSDGVAMFEDVPFLTSAGACFS 270
            M E+SRLEIRVG+ +EC KHPDADSLYVE ID GE E RTIVSGLV YVP ++M GR V+ LCNL  RAMRGV S GMLLCASN+DH+ VDPLS P  A IGELITF+G  SAP  PS+ A++A+     G+KT     +  GVA ++  P LTSAGAC S
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPMLTSAGACTS 161          
BLAST of Gcaud1773.t1 vs. uniprot
Match: A0A0G4EPM0_VITBC (Tryptophan--tRNA ligase n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPM0_VITBC)

HSP 1 Score: 190 bits (483), Expect = 1.070e-52
Identity = 100/161 (62.11%), Postives = 118/161 (73.29%), Query Frame = 0
Query:  105 SKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNEDHTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNSDGVAMFEDVPFLTSA 265
            S +  S E    +IS LEIRVG+I+E E+HPDADSLYVEK+D+GE E RTIVSGLV Y+  E++ GRNVIVLCNLKPRAMRG+ S GMLLC+S+ D T V PLS P  A +GEL+TFDG  S P+ P N+A KAFDR+A  L     GVA F  VPF TSA
Sbjct:  445 SAEEGSGEREKGDISLLEIRVGRILEVERHPDADSLYVEKVDLGEGEPRTIVSGLVPYLSQEELQGRNVIVLCNLKPRAMRGIKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRSVPFQTSA 605          
The following BLAST results are available for this feature:
BLAST of Gcaud1773.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUX7_9FLOR1.860e-15878.49Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0FZY8_9RHOD2.930e-8655.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TKX4_9RHOD6.780e-8555.06Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A7S0ZE83_9RHOD1.430e-8069.82Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A5J4Z2W6_PORPP6.940e-7757.14Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
W7U6C4_9STRA7.610e-5947.13Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S2V4I0_9STRA1.770e-5855.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0XDL6_9STRA6.380e-5758.43Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6H5KCD4_9PHAE2.730e-5562.73tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A0G4EPM0_VITBC1.070e-5262.11Tryptophan--tRNA ligase n=3 Tax=Vitrella brassicaf... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 16..102
e-value: 1.9E-5
score: 26.6
NoneNo IPR availableGENE3D2.40.50.140coord: 117..278
e-value: 1.3E-55
score: 189.8
NoneNo IPR availablePANTHERPTHR11586TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERcoord: 105..269
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..279
NoneNo IPR availableCDDcd02799tRNA_bind_EMAP-II_likecoord: 118..220
e-value: 4.76961E-59
score: 181.658
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 123..217
e-value: 5.6E-32
score: 109.7
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 117..220
score: 34.669682
IPR003961Fibronectin type IIICDDcd00063FN3coord: 20..94
e-value: 1.1844E-4
score: 38.2463
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 9..100
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 118..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:13543..14382 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1773.t1Gcaud1773.t1Gracilaria caudata M_176_S67 malemRNANODE_837_length_17206_cov_4.413380 13543..14382 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1773.t1 ID=Gcaud1773.t1|Name=Gcaud1773.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
MSNAGFIASTATALWRSSATKISTEAVGERMVSLVWSGRPSSAFTVLYAP
VGAKFRSRRVVAHPRVNLTGLRPGVPYEVRVTGDGFDSSTSFTTAATAQP
AGAVSKDGSSEELPMTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEE
ELRTIVSGLVKYVPVEKMIGRNVIVLCNLKPRAMRGVFSHGMLLCASNED
HTIVDPLSAPSEAPIGELITFDGHKSAPIDPSNRATKAFDRIAAGLKTNS
DGVAMFEDVPFLTSAGACFSPEKLVGSIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR002547tRNA-bd_dom
IPR003961FN3_dom
IPR036116FN3_sf
IPR012340NA-bd_OB-fold