Gcaud1769.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1769.t1
Unique NameGcaud1769.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length143
Homology
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A2V3IVN0_9FLOR (Profilin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVN0_9FLOR)

HSP 1 Score: 254 bits (648), Expect = 4.570e-85
Identity = 120/142 (84.51%), Postives = 133/142 (93.66%), Query Frame = 0
Query:    1 MSWDPYVQTLVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNRLEDSEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF 142
            MSWDPYV TLVEAGFHHACIAGHDGH+WG+T  FK+Q  EIIRL SVL+DD EA++A  +SGFTLC+MPYALNRL+++EDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYS+G+SFGRAKVAVFQLAETLIAMNF
Sbjct:    1 MSWDPYVDTLVEAGFHHACIAGHDGHVWGSTPDFKVQNAEIIRLVSVLLDDPEAIRAAYKSGFTLCVMPYALNRLDEAEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSDGKSFGRAKVAVFQLAETLIAMNF 142          
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A7S0ZK44_9RHOD (Profilin n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK44_9RHOD)

HSP 1 Score: 109 bits (272), Expect = 7.560e-28
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 0
Query:    1 MSWDPYVQT-LVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNR--LEDSEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAE 135
            MSW  YV   L+ AGF +A I GHDG +W  +  + +   E ++L  +L    E + +I   GF +    YA  R  ++D +  +  L GRCK+ GK A+G IV +T K++IIG+HDP YS G SFG+    + ++A+
Sbjct:    1 MSWQTYVDANLLGAGFCYAAICGHDGAMWANSPGYTVLPAEAVKLDGLLSGTMENLSSIANGGFYVAGQKYAFTRGEVDDEDGGVPFLQGRCKEEGKSAQGIIVYRTGKALIIGVHDPAYSNGASFGKVNTEIGKVAD 138          
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A7S1TMC4_9RHOD (Profilin n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMC4_9RHOD)

HSP 1 Score: 108 bits (271), Expect = 1.070e-27
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 0
Query:    1 MSWDPYVQT-LVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNR--LEDSEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF 142
            MSW  Y+ + L+ AGF +A I GHDG  W  +  + +   E  +L+S+L    + + +I   GF +    YA  R  ++D +  +  L GRCK+ GK A+G I+ +TAK++I+G+HDP YS G SFG+    + ++A+ +    F
Sbjct:    1 MSWQTYIDSNLLGAGFCYASICGHDGSTWACSPGYTVLPAEASKLNSLLSGTMDDLNSIASGGFYVAGQKYAFTRGEVDDEDGGVPYLQGRCKEEGKSAQGIIIYRTAKALIVGVHDPAYSNGASFGKVNTEIGKVADYMFENGF 145          
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A5J4YIH8_PORPP (Profilin n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIH8_PORPP)

HSP 1 Score: 108 bits (269), Expect = 2.210e-27
Identity = 56/146 (38.36%), Postives = 83/146 (56.85%), Query Frame = 0
Query:    1 MSWDPYV-QTLVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQA-IKQSGFTLCMMPYALNRLEDSEDD--LRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF 142
            MSW  YV Q L+ AGF +A I GHDG  W  +  + +   E  RL  +L  D + +   +   GF +    YA  R E  +DD  +  L GRCK+ GK A+G I+ +TA+++IIG HDP YS G SF +A + + ++A+ +   +F
Sbjct:    1 MSWQTYVDQNLLGAGFCYAAIVGHDGSTWAASPGYTVLPDEAARLAQLLGGDADTINTQLSSGGFKVAGQQYAFTRAEVDDDDGGVPTLQGRCKEEGKSAQGIIIYRTAQALIIGCHDPAYSNGASFNKANMEMGKVADYMFENSF 146          
BLAST of Gcaud1769.t1 vs. uniprot
Match: R7QK25_CHOCR (Profilin n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK25_CHOCR)

HSP 1 Score: 102 bits (255), Expect = 2.710e-25
Identity = 54/141 (38.30%), Postives = 81/141 (57.45%), Query Frame = 0
Query:    1 MSWDPYVQT-LVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNRLEDSEDD--LRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLI 138
            M+W  Y+   LV AGF +A I GHD   W  T  F++   E   L S+L  + ++   I  +GF +    Y + R E  +DD     L GRCK+ GK A+G I+  TA+S+I+G+HDP YS G SFG+A   + ++A+ ++
Sbjct:    1 MTWQTYIDDHLVPAGFMYAAIVGHDASTWANTKDFQVLDAETKILVSLLTGE-KSFDEISTTGFHVAGQKYTMTRYEIDDDDGGAAFLQGRCKEEGKSAQGVIIMCTAQSLIVGVHDPKYSNGASFGKANTDIGRVADYIM 140          
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A1X6NT81_PORUM (Profilin n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NT81_PORUM)

HSP 1 Score: 100 bits (249), Expect = 2.120e-24
Identity = 48/145 (33.10%), Postives = 83/145 (57.24%), Query Frame = 0
Query:    1 MSWDPYVQT-LVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNR--LEDSEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF 142
            MSW  Y+   L+ AGF +A I GHDG  W  +  + +  +E   L ++L   + ++++I   GF++    YA  R  ++D E  +  + GRCK+ GK ++G IV +T  ++++G+HDP Y+ G SFG+    + +LA+  +   F
Sbjct:    1 MSWQSYIDDQLLAAGFSYASIVGHDGTTWACSPGYSVLPEEAKSLATLL--SSTSLESIAGPGFSVAGQRYAFTRGEVDDDEGGVPFIQGRCKEEGKSSQGVIVMRTTSALLVGVHDPAYANGASFGKVNTDIGRLADYFVESGF 143          
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A7S1TDT3_9RHOD (Profilin n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT3_9RHOD)

HSP 1 Score: 99.8 bits (247), Expect = 4.240e-24
Identity = 51/145 (35.17%), Postives = 80/145 (55.17%), Query Frame = 0
Query:    1 MSWDPYVQ-TLVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNRLE--DSEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF 142
            MSW  Y+   L+ AGF +A I G DG  W ++  + +   E  R  S+L   +  + ++  +GFT     YA  R E  D    +  + GRCK+ GK ++G I+ KT +++I+G+HDP YS G SFG A  A+ ++A+  +   F
Sbjct:    1 MSWQDYIDGQLLRAGFCYASIVGFDGSCWASSQGYVILPDEAKRFASLLAGTS--LDSLSAAGFTAAGQKYAFTRGEVNDPNGSVPFIQGRCKEDGKSSQGIIIMKTTQALIVGVHDPAYSNGASFGSANTAIGRIADYFVESGF 143          
BLAST of Gcaud1769.t1 vs. uniprot
Match: A0A2V3IMA4_9FLOR (Profilin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMA4_9FLOR)

HSP 1 Score: 92.8 bits (229), Expect = 2.240e-21
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 0
Query:    2 SWDPYVQT-LVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMDDTEAVQAIKQSGFTLCMMPYALNR--LEDSEDDLRMLVGRCKKAGKPARGAIVAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF 142
            SW  YV   L+ AG  +A I GHDG  W ++  F +  +E   L   L++    +  I  SGFT+    Y   R  ++D E +     GRCK+ GK A+G I+  T ++ +IG+HDP Y++G SFG       ++A+ L+ + F
Sbjct:    3 SWQTYVDDQLMAAGCMYAAIYGHDGSKWASSPGFDISNEECEVLVEALVNSN--LGKISGSGFTIATQKYTFTRGEVDDEEGNPSYAQGRCKEEGKSAQGVIIYATTQAFVIGVHDPQYADGASFGSVNTDAGRVADYLMELGF 144          
The following BLAST results are available for this feature:
BLAST of Gcaud1769.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IVN0_9FLOR4.570e-8584.51Profilin n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
A0A7S0ZK44_9RHOD7.560e-2838.41Profilin n=1 Tax=Timspurckia oligopyrenoides TaxID... [more]
A0A7S1TMC4_9RHOD1.070e-2735.86Profilin n=1 Tax=Erythrolobus australicus TaxID=10... [more]
A0A5J4YIH8_PORPP2.210e-2738.36Profilin n=1 Tax=Porphyridium purpureum TaxID=3568... [more]
R7QK25_CHOCR2.710e-2538.30Profilin n=1 Tax=Chondrus crispus TaxID=2769 RepID... [more]
A0A1X6NT81_PORUM2.120e-2433.10Profilin n=1 Tax=Porphyra umbilicalis TaxID=2786 R... [more]
A0A7S1TDT3_9RHOD4.240e-2435.17Profilin n=1 Tax=Compsopogon caeruleus TaxID=31354... [more]
A0A2V3IMA4_9FLOR2.240e-2134.72Profilin n=1 Tax=Gracilariopsis chorda TaxID=44838... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005455ProfilinSMARTSM00392prof_2coord: 1..142
e-value: 4.2E-7
score: 39.6
IPR005455ProfilinPFAMPF00235Profilincoord: 1..141
e-value: 1.4E-18
score: 67.3
IPR005455ProfilinPANTHERPTHR11604PROFILINcoord: 1..141
NoneNo IPR availableGENE3D3.30.450.30Dynein light chain 2a, cytoplasmiccoord: 1..142
e-value: 3.9E-23
score: 84.0
NoneNo IPR availablePANTHERPTHR11604:SF0PROFILINcoord: 1..141
IPR027310Profilin conserved sitePROSITEPS00414PROFILINcoord: 1..8
IPR036140Profilin superfamilySUPERFAMILY55770Profilin (actin-binding protein)coord: 2..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:4294..4722 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1769.t1Gcaud1769.t1Gracilaria caudata M_176_S67 malemRNANODE_837_length_17206_cov_4.413380 4294..4722 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1769.t1 ID=Gcaud1769.t1|Name=Gcaud1769.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=143bp
MSWDPYVQTLVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMD
DTEAVQAIKQSGFTLCMMPYALNRLEDSEDDLRMLVGRCKKAGKPARGAI
VAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005455PFN
IPR027310Profilin_CS
IPR036140PFN_sf