Gcaud1769.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1769.t1
Unique NameGcaud1769.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:4294..4722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708857.1
PFAMsProfilin
Max annot lvl2759|Eukaryota
KEGG koko:K05759
KEGG Pathwayko04013,ko04015,ko04810,ko05131,ko05132,map04013,map04015,map04810,map05131,map05132
GOsGO:0006996,GO:0007010,GO:0007015,GO:0008150,GO:0009653,GO:0009987,GO:0010927,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0031032,GO:0032502,GO:0032989,GO:0042692,GO:0044085,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0055001,GO:0055002,GO:0061061,GO:0070925,GO:0071689,GO:0071840,GO:0097435
Evalue1.28e-19
EggNOG OGsKOG1755@1|root,KOG1755@2759|Eukaryota
Descriptionsequestering of actin monomers
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1769Gcaud1769Gracilaria caudata M_176_S67 malegeneNODE_837_length_17206_cov_4.413380 4294..4722 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1769.t1.stop1Gcaud1769.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_837_length_17206_cov_4.413380 4294..4296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1769.t1.CDS1Gcaud1769.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_837_length_17206_cov_4.413380 4294..4722 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1769.t1.exon1Gcaud1769.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_837_length_17206_cov_4.413380 4294..4722 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1769.t1.start1Gcaud1769.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_837_length_17206_cov_4.413380 4720..4722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1769.t1Gcaud1769.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_837_length_17206_cov_4.413380 4294..4722 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1769.t1 ID=Gcaud1769.t1|Name=Gcaud1769.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=143bp
MSWDPYVQTLVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMD
DTEAVQAIKQSGFTLCMMPYALNRLEDSEDDLRMLVGRCKKAGKPARGAI
VAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF*
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spliced messenger RNA

>Gcaud1769.t1 ID=Gcaud1769.t1|Name=Gcaud1769.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=429bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:4294..4722- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGGGACCCGTATGTACAGACGCTTGTGGAAGCCGGATTTCATCA
CGCATGCATCGCCGGACACGACGGACATATCTGGGGAACAACAGCCAGTT
TCAAGATGCAAGCCAAAGAAATAATTCGTCTACACTCGGTACTAATGGAT
GATACCGAAGCTGTGCAAGCTATAAAGCAATCCGGTTTCACGTTATGCAT
GATGCCATACGCGCTCAACAGACTTGAGGATTCGGAAGATGATTTAAGAA
TGCTTGTTGGGCGATGCAAAAAAGCCGGCAAACCAGCACGTGGTGCTATT
GTTGCCAAAACTGCAAAGAGCATCATTATTGGCATACACGATCCTGTTTA
TAGTGAGGGTCAGTCTTTTGGTCGCGCAAAAGTGGCCGTATTTCAACTGG
CCGAAACCTTGATTGCAATGAATTTCTAG
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protein sequence of Gcaud1769.t1

>Gcaud1769.t1 ID=Gcaud1769.t1|Name=Gcaud1769.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=143bp
MSWDPYVQTLVEAGFHHACIAGHDGHIWGTTASFKMQAKEIIRLHSVLMD
DTEAVQAIKQSGFTLCMMPYALNRLEDSEDDLRMLVGRCKKAGKPARGAI
VAKTAKSIIIGIHDPVYSEGQSFGRAKVAVFQLAETLIAMNF*
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mRNA from alignment at NODE_837_length_17206_cov_4.413380:4294..4722-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1769.t1 ID=Gcaud1769.t1|Name=Gcaud1769.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=429bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:4294..4722- (Gracilaria caudata M_176_S67 male)
ATGAGTTGGGACCCGTATGTACAGACGCTTGTGGAAGCCGGATTTCATCA
CGCATGCATCGCCGGACACGACGGACATATCTGGGGAACAACAGCCAGTT
TCAAGATGCAAGCCAAAGAAATAATTCGTCTACACTCGGTACTAATGGAT
GATACCGAAGCTGTGCAAGCTATAAAGCAATCCGGTTTCACGTTATGCAT
GATGCCATACGCGCTCAACAGACTTGAGGATTCGGAAGATGATTTAAGAA
TGCTTGTTGGGCGATGCAAAAAAGCCGGCAAACCAGCACGTGGTGCTATT
GTTGCCAAAACTGCAAAGAGCATCATTATTGGCATACACGATCCTGTTTA
TAGTGAGGGTCAGTCTTTTGGTCGCGCAAAAGTGGCCGTATTTCAACTGG
CCGAAACCTTGATTGCAATGAATTTCTAG
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Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:4294..4722-

>Gcaud1769.t1 ID=Gcaud1769.t1|Name=Gcaud1769.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=429bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:4294..4722- (Gracilaria caudata M_176_S67 male)
ATGAGTTGGGACCCGTATGTACAGACGCTTGTGGAAGCCGGATTTCATCA
CGCATGCATCGCCGGACACGACGGACATATCTGGGGAACAACAGCCAGTT
TCAAGATGCAAGCCAAAGAAATAATTCGTCTACACTCGGTACTAATGGAT
GATACCGAAGCTGTGCAAGCTATAAAGCAATCCGGTTTCACGTTATGCAT
GATGCCATACGCGCTCAACAGACTTGAGGATTCGGAAGATGATTTAAGAA
TGCTTGTTGGGCGATGCAAAAAAGCCGGCAAACCAGCACGTGGTGCTATT
GTTGCCAAAACTGCAAAGAGCATCATTATTGGCATACACGATCCTGTTTA
TAGTGAGGGTCAGTCTTTTGGTCGCGCAAAAGTGGCCGTATTTCAACTGG
CCGAAACCTTGATTGCAATGAATTTCTAG
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