Gcaud1767.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1767.t1
Unique NameGcaud1767.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length382
Homology
BLAST of Gcaud1767.t1 vs. uniprot
Match: A0A2V3IVN8_9FLOR (F-box/LRR-repeat protein 20 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVN8_9FLOR)

HSP 1 Score: 663 bits (1710), Expect = 6.840e-238
Identity = 329/381 (86.35%), Postives = 357/381 (93.70%), Query Frame = 0
Query:    1 MRLLDLSDDALALIVTHVMSPAREGSRAIVTEESLRASLPLALTCRTLHSVWRRCMTDLELWVSGRLTDRGLVSICAASGRAVHRLGLRRCRLSVNAFRAIPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTGLTMGGYFSTMEAHCPHVYRYLQESNYVEHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKKPTQKTRSVLLSRFGYDSPCDSESDDESCARE 381
            MRLLDL +DALAL++THVM+PAREG+R+IVTE+SLRASLPLA TCR  ++VWRRCMTDLELWVSGRL DRGL SICA+SGR +HRLGLRR RLS++AFRAIPRFC +LRSLDLSHT VTDDVI SLAARCGS LQFLALHGCT LSSRALRAIAD CTHLRFLDVG VPAVDD+TL+++VR RG +LRTLVLS C+KLSD AMG IG HCSALMSLTVRSL+S+TDRGLQ +CE+IGH LQILD+LDCTGLTMGGYFSTMEAHCPHV+RYLQESNYV+HLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKKPT KTR+VLLSRFGYDSPCDSESDDESCARE
Sbjct:   70 MRLLDLPEDALALVMTHVMTPAREGTRSIVTEDSLRASLPLAQTCRAFYAVWRRCMTDLELWVSGRLDDRGLTSICASSGRYIHRLGLRRSRLSLHAFRAIPRFCSQLRSLDLSHTSVTDDVIFSLAARCGSKLQFLALHGCTKLSSRALRAIADMCTHLRFLDVGRVPAVDDDTLAHIVRARGATLRTLVLSDCSKLSDAAMGHIGKHCSALMSLTVRSLTSITDRGLQTMCEHIGHHLQILDLLDCTGLTMGGYFSTMEAHCPHVFRYLQESNYVDHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKKPTPKTRNVLLSRFGYDSPCDSESDDESCARE 450          
BLAST of Gcaud1767.t1 vs. uniprot
Match: R7QIH1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIH1_CHOCR)

HSP 1 Score: 548 bits (1413), Expect = 9.490e-194
Identity = 267/381 (70.08%), Postives = 316/381 (82.94%), Query Frame = 0
Query:    1 MRLLDLSDDALALIVTHVMSPAREGSRAIVTEESLRASLPLALTCRTLHSVWRRCMTDLELWVSGRLTDRGLVSICAASGRAVHRLGLRRCR-LSVNAFRAIPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTGLTMGGYFSTMEAHCPHVYRYLQESNYVEHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKKPTQKTRSVLLSRFGYDSPCDSESDDESCAR 380
            + LLDLS+D L  I+THVM+PA+EGSR I+TEES++ASLPLA TC  L+ VWR  M DLELWVSG+L DRGL +IC  +G+ +HRLGLRRC+ +S  AF  IPR C RLRSLD+SHT + DD ++ L    G +LQFLALHGC  L++R++ AIAD C HLRFLD+G++ AVDD  + YLV   G S+RT+VLS+C  LSD+ M  +G  C A+MSLT+R LSS+TD GL KLC  IG R+QILDVLDC GLTMGGYF+TMEA CPHV++YL+ESNY++HLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFG+VLISNFGKKPT KT+++LLSRFGYDSP DSESDDE+C R
Sbjct:    2 LHLLDLSEDILVGIMTHVMTPAKEGSRKIITEESIKASLPLATTCHALYDVWRHSMHDLELWVSGKLNDRGLEAICKGNGKGIHRLGLRRCKAISKRAFAQIPRQCSRLRSLDMSHTDIGDDFVLELTKNTGRSLQFLALHGCNKLTARSIHAIADRCPHLRFLDIGSIAAVDDAAIEYLVSRLGGSIRTMVLSNCKNLSDSGMAALGVECKAIMSLTLRGLSSITDNGLYKLCCGIGDRVQILDVLDCAGLTMGGYFATMEAFCPHVFKYLEESNYIDHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGSVLISNFGKKPTPKTKNILLSRFGYDSPFDSESDDEACER 382          
BLAST of Gcaud1767.t1 vs. uniprot
Match: UPI00126398C7 (uncharacterized protein LOC116126283 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126398C7)

HSP 1 Score: 66.2 bits (160), Expect = 4.230e-8
Identity = 51/176 (28.98%), Postives = 84/176 (47.73%), Query Frame = 0
Query:   56 MTDLELWVSGRLTDRGLVSICAASGRAVHRLG-LRRC---RLSVNAFRAIPRFCPRLRSLDLSHTR-VTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTD 226
            +T L+L   GRL D  ++S    S +++  L  L  C   RLS    + I      LR ++LS    VT   I  LA   GS +Q L ++ C  + +  +        HL  L V  +  V D+ +   + + G +++ LVL+ C KL+D ++  I   C+ L +L + +L  +TD
Sbjct:  413 LTVLQLDYCGRLPDHIVLSTLVRSSKSLSSLTTLSLCGASRLSDVGLQGIVSSASALRCINLSQCCFVTATSINILANSLGSVMQELYINDCQNIDAMLILPALKKLKHLEVLSVARIETVSDDFIREFLSDHGHNMKELVLTECVKLTDISLKAIAETCTGLRALDIFNLRRLTD 588          
BLAST of Gcaud1767.t1 vs. uniprot
Match: A0A5A7UQM3_CUCME (Leucine-rich repeat, cysteine-containing subtype n=2 Tax=Cucumis melo TaxID=3656 RepID=A0A5A7UQM3_CUCME)

HSP 1 Score: 65.5 bits (158), Expect = 8.050e-8
Identity = 55/177 (31.07%), Postives = 87/177 (49.15%), Query Frame = 0
Query:   59 LELWVSGR-LTDRGLVSICAASGR---AVHRLGLR-RCRLSVNAFRAIPRFCPRLRSLDLSHTR-VTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGL 229
            L+L+  GR + D  L+S  A S     A+  L L   C LS     A+    P L+SL+LS    +T   I S+A   GSTL+ L L  C  +    +    +   HL  L +  +  V D+ +   +   G +L+ L+L+ C KL++ ++  I   CSAL ++ + +LS +TD  L
Sbjct:  555 LQLYQCGRSIFDIVLLSTLARSSNSLPALKSLSLTGACSLSDVGVAALVCSAPALQSLNLSQCSFLTFSSIDSIANSLGSTLRELYLDDCLKIDPMLMLPAMNKLQHLEVLSLAGMEDVCDKFIQEFLTAGGRNLKELILTDCVKLTNKSIKAISETCSALRAIDLMNLSKLTDYAL 731          
BLAST of Gcaud1767.t1 vs. uniprot
Match: F6HGN8_VITVI (Uncharacterized protein n=5 Tax=Vitis TaxID=3603 RepID=F6HGN8_VITVI)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-7
Identity = 44/158 (27.85%), Postives = 75/158 (47.47%), Query Frame = 0
Query:   54 RCMTDLELWVSGRLTDRGLVSICAASGRAVHRLGLRRCRLSVNAFRAIPRFCPRLRSLDLSH-TRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHC 210
            RCMTD  L  +  +   GL ++   S +         CRLS    RA+    P LRS++LS  + +T   I +LA   GS L+ L +  C  + +  + +  +    L  L V  +  V D+ +   +   G +++ LVL+ C++L+D ++  I   C
Sbjct:  550 RCMTDYVLRATFDMLSNGLPALTTVSLKGA-------CRLSDAGLRALVSSAPMLRSINLSQCSLLTSASIKNLAETLGSVLRELYIDDCQGIDAMLILSALEKLECLEVLSVAGIQTVCDDFIWEFISVHGPTMKELVLTDCSRLTDFSLKAIAETC 700          
BLAST of Gcaud1767.t1 vs. uniprot
Match: D8TQC5_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQC5_VOLCA)

HSP 1 Score: 63.9 bits (154), Expect = 1.810e-7
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 0
Query:  105 CPRLRSLDLSH-TRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTGLT 252
            C  LR++DLS    VT   ++++ + CG TL  L L+GC  +   AL A+   C  L+ L+V  + A++D  L  L     T+L TL L+ CT+L++  +  + A    L  L + +L  VTD  L  L +   H L  L +  C  LT
Sbjct:  254 CTALRAVDLSGCANVTGPNLLAMLSGCGRTLTSLQLNGCVGVDGEALGAVGRLCPGLQTLNVRGL-ALNDGHLRDLASSC-TTLHTLCLAWCTRLTEEGLRPLLARNPELEDLDIEALYLVTDTLLTALAQYTPH-LDRLGIRMCHRLT 399          
BLAST of Gcaud1767.t1 vs. uniprot
Match: A0A2J7PGU4_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PGU4_9NEOP)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-6
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 0
Query:   85 RLGLRRCRLSVNA---FRAIPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQK 231
            +L LR C LS ++     +I  F P L  L L       +   SL  R    L  L L     LS +A+R IA+SC HL+ L++  V  + D+ + +++++ G+ L TL+L     L+D A   + ++C  L  L V     +T++GL K
Sbjct:    9 KLNLRFCSLSEDSTGLLASIVAFYPNLEELTLKGCFPLTEAGYSLIPRL-KKLSVLDLSHSEELSGKAVRLIAESCQHLKKLNLDDVRKISDDDVVHIIKKLGSQLITLILDG-EDLTDVAFSNL-SNCVRLQELEVSFCDQMTNKGLLK 155          
BLAST of Gcaud1767.t1 vs. uniprot
Match: A0A1V9XNU4_9ACAR (Putative RNA-binding protein EEED8.10-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XNU4_9ACAR)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-6
Identity = 66/282 (23.40%), Postives = 116/282 (41.13%), Query Frame = 0
Query:   70 RGLVSICAASGRAVHRLGLRRCRLSVNAFRAIPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTGLTMGGYFSTMEAHCPHVYRYLQESNYVEHLGERCLRDNIIATMPGLIYRISATDAIR--RLPALYFLLLDE-STLRPFRVSVQSKSLNLSDFGTVLISNFG 348
            R L++ C  S R +    +        A   I + CP L  L++S   +T+ V +              L GC  +  + L  +   C HL  +D+  V  +  +         G  LR +VL  C  ++ +   ++   CS L SL++ S++ ++D+ L  +C N    L+ +  +   G  +    ST      H  + L+E+ Y+   GE  + D++   +     R+   D  R  RL  L F  L + S L+  + S   +   L+D G   +S  G
Sbjct:  357 RALLTRCKGSLRRIDLSTIAHTMSGAEAAEQIAQTCPHLEQLNMSGLSLTN-VSLQXXXXXXXXXXXXXLAGCRDIGEKGLWWLFHLCKHLEHIDLTGVSKLTGQCFHM----SGQRLRCVVLDACVGVTHSGFVKLATKCSFLQSLSLNSVTQLSDKDLNYICSN----LRAIKTIHLEGKGLTSLTSTGLCTALHKLQQLEEA-YLAENGE--VTDDVACVLARACARLRVLDVSRCCRLTNLAFSALSQCSNLKTLKASYLDQ---LNDDGLRALSTQG 623          
BLAST of Gcaud1767.t1 vs. uniprot
Match: A0A2J7PGV1_9NEOP (F-box domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PGV1_9NEOP)

HSP 1 Score: 60.5 bits (145), Expect = 1.870e-6
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 0
Query:   72 LVSICAASGRAVHRLGLRRCRLSVNA---FRAIPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQK 231
            L+ +   S   + +L LR C LS ++     +I  F P L  L L       +   SL  R    L  L L     LS +A+R IA+SC HL+ L++  V  + D+ + +++++ G+ L TL+L     L+D A   + ++C  L  L V     +T++GL K
Sbjct:  113 LLELLFDSCGCLKKLNLRFCSLSEDSTGLLASIVAFYPNLEELTLKGCFPLTEAGYSLIPRL-KKLSVLDLSHSEELSGKAVRLIAESCQHLKKLNLDDVRKISDDDVVHIIKKLGSQLITLILDG-EDLTDVAFSNL-SNCVRLQELEVSFCDQMTNKGLLK 272          
BLAST of Gcaud1767.t1 vs. uniprot
Match: A0A2J7PGU1_9NEOP (Uncharacterized protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PGU1_9NEOP)

HSP 1 Score: 60.1 bits (144), Expect = 2.070e-6
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 0
Query:   85 RLGLRRCRLSVNA---FRAIPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRALRAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSDTAMGEIGAHCSALMSLTVRSLSSVTDRGLQK 231
            +L LR C LS ++     +I  F P L  L L       +   SL  R    L  L L     LS +A+R IA+SC HL+ L++  V  + D+ + +++++ G+ L TL+L     L+D A   + ++C  L  L V     +T++GL K
Sbjct:    9 KLNLRFCSLSEDSTGLLASIVAFYPNLEELTLKGCFPLTEAGYSLIPRL-KKLSVLDLSHSEELSGKAVRLIAESCQHLKKLNLDDVRKISDDDVVHIIKKLGSQLITLILDG-EDLTDVAFSNL-SNCVRLQELEVSFCDQMTNKGLLK 155          
The following BLAST results are available for this feature:
BLAST of Gcaud1767.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2V3IVN8_9FLOR6.840e-23886.35F-box/LRR-repeat protein 20 n=1 Tax=Gracilariopsis... [more]
R7QIH1_CHOCR9.490e-19470.08Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI00126398C74.230e-828.98uncharacterized protein LOC116126283 n=1 Tax=Pista... [more]
A0A5A7UQM3_CUCME8.050e-831.07Leucine-rich repeat, cysteine-containing subtype n... [more]
F6HGN8_VITVI1.410e-727.85Uncharacterized protein n=5 Tax=Vitis TaxID=3603 R... [more]
D8TQC5_VOLCA1.810e-733.56Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A2J7PGU4_9NEOP1.260e-631.33Uncharacterized protein n=1 Tax=Cryptotermes secun... [more]
A0A1V9XNU4_9ACAR1.730e-623.40Putative RNA-binding protein EEED8.10-like n=1 Tax... [more]
A0A2J7PGV1_9NEOP1.870e-630.06F-box domain-containing protein n=2 Tax=Cryptoterm... [more]
A0A2J7PGU1_9NEOP2.070e-631.33Uncharacterized protein n=2 Tax=Cryptotermes secun... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 157..182
e-value: 110.0
score: 6.3
coord: 184..209
e-value: 0.12
score: 21.5
coord: 105..129
e-value: 1.6
score: 17.7
coord: 210..235
e-value: 0.058
score: 22.5
coord: 131..156
e-value: 38.0
score: 10.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 147..289
e-value: 9.3E-20
score: 72.8
coord: 5..146
e-value: 3.5E-14
score: 54.5
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 48..254
NoneNo IPR availablePANTHERPTHR13382:SF7F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17coord: 48..254
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 43..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_837_length_17206_cov_4.413380contigNODE_837_length_17206_cov_4.413380:649..1794 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1767.t1Gcaud1767.t1Gracilaria caudata M_176_S67 malemRNANODE_837_length_17206_cov_4.413380 649..1794 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1767.t1 ID=Gcaud1767.t1|Name=Gcaud1767.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=382bp
MRLLDLSDDALALIVTHVMSPAREGSRAIVTEESLRASLPLALTCRTLHS
VWRRCMTDLELWVSGRLTDRGLVSICAASGRAVHRLGLRRCRLSVNAFRA
IPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRAL
RAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSD
TAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTG
LTMGGYFSTMEAHCPHVYRYLQESNYVEHLGERCLRDNIIATMPGLIYRI
SATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKK
PTQKTRSVLLSRFGYDSPCDSESDDESCARE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf