Gcaud1767.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1767.t1
Unique Name	Gcaud1767.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_837_length_17206_cov_4.413380	contig	NODE_837_length_17206_cov_4.413380:649..1794 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010666291.1
PFAMs	LRR_6
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15082
Evalue	2.42e-10
EggNOG OGs	KOG1947@1\|root,KOG1947@2759\|Eukaryota,37QPY@33090\|Viridiplantae,3GG9G@35493\|Streptophyta
Description	Leucine-rich repeats, outliers
COG category	L
BRITE	ko00000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1767	Gcaud1767	Gracilaria caudata M_176_S67 male	gene	NODE_837_length_17206_cov_4.413380 649..1794 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1767.t1.start1	Gcaud1767.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_837_length_17206_cov_4.413380 649..651 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1767.t1.CDS1	Gcaud1767.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_837_length_17206_cov_4.413380 649..1794 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1767.t1.exon1	Gcaud1767.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_837_length_17206_cov_4.413380 649..1794 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1767.t1.stop1	Gcaud1767.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_837_length_17206_cov_4.413380 1792..1794 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1767.t1	Gcaud1767.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_837_length_17206_cov_4.413380 649..1794 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_837_length_17206_cov_4.413380:649..1794+
coding sequence from alignment at NODE_837_length_17206_cov_4.413380:649..1794+

mRNA sequence

>Gcaud1767.t1 ID=Gcaud1767.t1|Name=Gcaud1767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=382bp
MRLLDLSDDALALIVTHVMSPAREGSRAIVTEESLRASLPLALTCRTLHS
VWRRCMTDLELWVSGRLTDRGLVSICAASGRAVHRLGLRRCRLSVNAFRA
IPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRAL
RAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSD
TAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTG
LTMGGYFSTMEAHCPHVYRYLQESNYVEHLGERCLRDNIIATMPGLIYRI
SATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKK
PTQKTRSVLLSRFGYDSPCDSESDDESCARE*

spliced messenger RNA

>Gcaud1767.t1 ID=Gcaud1767.t1|Name=Gcaud1767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:649..1794+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTGCTCGACCTTTCCGACGACGCGCTTGCGCTCATTGTTACTCA
TGTGATGAGCCCCGCGCGCGAGGGCTCTCGTGCCATCGTCACCGAAGAGA
GCCTGCGTGCAAGTCTGCCGCTCGCGCTTACTTGCCGCACCTTGCATTCC
GTGTGGCGTCGTTGTATGACTGACCTGGAGCTGTGGGTGTCTGGCCGTCT
CACAGACCGTGGACTCGTCTCCATTTGCGCCGCGAGTGGCCGAGCGGTGC
ATCGGCTGGGTTTGCGCCGTTGTCGCCTCTCGGTCAACGCCTTTCGAGCC
ATTCCGCGTTTTTGCCCGCGTCTGCGCAGCCTTGATCTGTCGCACACTCG
TGTGACGGACGATGTCATTGTCTCGCTGGCCGCCCGTTGCGGCTCCACGC
TGCAGTTCCTCGCGTTGCATGGATGTACTGCATTGTCGTCTCGCGCACTG
CGTGCCATTGCCGACTCGTGCACTCATCTGCGCTTCTTGGATGTTGGCGC
CGTGCCTGCTGTGGACGATGAGACGCTCTCGTACCTCGTGCGAGAAAGAG
GCACTTCGCTCCGCACTCTGGTTTTGTCGCATTGTACTAAGCTGTCGGAC
ACTGCTATGGGCGAGATAGGAGCGCACTGCAGCGCATTGATGTCGCTCAC
TGTGCGTTCGCTTTCGTCCGTGACTGATCGTGGACTGCAGAAGTTATGCG
AAAACATTGGTCATAGACTGCAAATCCTTGACGTTCTGGACTGCACGGGG
CTCACAATGGGAGGTTACTTCTCTACCATGGAGGCGCATTGTCCCCATGT
GTACCGCTATCTGCAGGAGAGTAACTACGTGGAGCATTTGGGAGAGCGTT
GCTTACGCGATAACATCATCGCCACTATGCCGGGACTTATATATCGCATT
TCGGCGACTGATGCTATTCGACGTCTGCCGGCTCTGTACTTCCTGCTGCT
GGATGAGAGCACGTTGCGCCCGTTCCGCGTTTCTGTTCAGAGCAAGTCTC
TGAATTTGAGCGACTTTGGTACAGTGCTTATCTCCAACTTTGGCAAGAAG
CCTACTCAGAAGACAAGAAGTGTATTGCTGAGCCGATTCGGTTACGACAG
CCCCTGTGACTCGGAATCTGATGACGAATCATGTGCCAGGGAGTGA

protein sequence of Gcaud1767.t1

>Gcaud1767.t1 ID=Gcaud1767.t1|Name=Gcaud1767.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=382bp
MRLLDLSDDALALIVTHVMSPAREGSRAIVTEESLRASLPLALTCRTLHS
VWRRCMTDLELWVSGRLTDRGLVSICAASGRAVHRLGLRRCRLSVNAFRA
IPRFCPRLRSLDLSHTRVTDDVIVSLAARCGSTLQFLALHGCTALSSRAL
RAIADSCTHLRFLDVGAVPAVDDETLSYLVRERGTSLRTLVLSHCTKLSD
TAMGEIGAHCSALMSLTVRSLSSVTDRGLQKLCENIGHRLQILDVLDCTG
LTMGGYFSTMEAHCPHVYRYLQESNYVEHLGERCLRDNIIATMPGLIYRI
SATDAIRRLPALYFLLLDESTLRPFRVSVQSKSLNLSDFGTVLISNFGKK
PTQKTRSVLLSRFGYDSPCDSESDDESCARE*

mRNA from alignment at NODE_837_length_17206_cov_4.413380:649..1794+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1767.t1 ID=Gcaud1767.t1|Name=Gcaud1767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:649..1794+ (Gracilaria caudata M_176_S67 male)
ATGCGTCTGCTCGACCTTTCCGACGACGCGCTTGCGCTCATTGTTACTCA
TGTGATGAGCCCCGCGCGCGAGGGCTCTCGTGCCATCGTCACCGAAGAGA
GCCTGCGTGCAAGTCTGCCGCTCGCGCTTACTTGCCGCACCTTGCATTCC
GTGTGGCGTCGTTGTATGACTGACCTGGAGCTGTGGGTGTCTGGCCGTCT
CACAGACCGTGGACTCGTCTCCATTTGCGCCGCGAGTGGCCGAGCGGTGC
ATCGGCTGGGTTTGCGCCGTTGTCGCCTCTCGGTCAACGCCTTTCGAGCC
ATTCCGCGTTTTTGCCCGCGTCTGCGCAGCCTTGATCTGTCGCACACTCG
TGTGACGGACGATGTCATTGTCTCGCTGGCCGCCCGTTGCGGCTCCACGC
TGCAGTTCCTCGCGTTGCATGGATGTACTGCATTGTCGTCTCGCGCACTG
CGTGCCATTGCCGACTCGTGCACTCATCTGCGCTTCTTGGATGTTGGCGC
CGTGCCTGCTGTGGACGATGAGACGCTCTCGTACCTCGTGCGAGAAAGAG
GCACTTCGCTCCGCACTCTGGTTTTGTCGCATTGTACTAAGCTGTCGGAC
ACTGCTATGGGCGAGATAGGAGCGCACTGCAGCGCATTGATGTCGCTCAC
TGTGCGTTCGCTTTCGTCCGTGACTGATCGTGGACTGCAGAAGTTATGCG
AAAACATTGGTCATAGACTGCAAATCCTTGACGTTCTGGACTGCACGGGG
CTCACAATGGGAGGTTACTTCTCTACCATGGAGGCGCATTGTCCCCATGT
GTACCGCTATCTGCAGGAGAGTAACTACGTGGAGCATTTGGGAGAGCGTT
GCTTACGCGATAACATCATCGCCACTATGCCGGGACTTATATATCGCATT
TCGGCGACTGATGCTATTCGACGTCTGCCGGCTCTGTACTTCCTGCTGCT
GGATGAGAGCACGTTGCGCCCGTTCCGCGTTTCTGTTCAGAGCAAGTCTC
TGAATTTGAGCGACTTTGGTACAGTGCTTATCTCCAACTTTGGCAAGAAG
CCTACTCAGAAGACAAGAAGTGTATTGCTGAGCCGATTCGGTTACGACAG
CCCCTGTGACTCGGAATCTGATGACGAATCATGTGCCAGGGAGTGA

Coding sequence (CDS) from alignment at NODE_837_length_17206_cov_4.413380:649..1794+

>Gcaud1767.t1 ID=Gcaud1767.t1|Name=Gcaud1767.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1146bp|location=Sequence derived from alignment at NODE_837_length_17206_cov_4.413380:649..1794+ (Gracilaria caudata M_176_S67 male)
ATGCGTCTGCTCGACCTTTCCGACGACGCGCTTGCGCTCATTGTTACTCA
TGTGATGAGCCCCGCGCGCGAGGGCTCTCGTGCCATCGTCACCGAAGAGA
GCCTGCGTGCAAGTCTGCCGCTCGCGCTTACTTGCCGCACCTTGCATTCC
GTGTGGCGTCGTTGTATGACTGACCTGGAGCTGTGGGTGTCTGGCCGTCT
CACAGACCGTGGACTCGTCTCCATTTGCGCCGCGAGTGGCCGAGCGGTGC
ATCGGCTGGGTTTGCGCCGTTGTCGCCTCTCGGTCAACGCCTTTCGAGCC
ATTCCGCGTTTTTGCCCGCGTCTGCGCAGCCTTGATCTGTCGCACACTCG
TGTGACGGACGATGTCATTGTCTCGCTGGCCGCCCGTTGCGGCTCCACGC
TGCAGTTCCTCGCGTTGCATGGATGTACTGCATTGTCGTCTCGCGCACTG
CGTGCCATTGCCGACTCGTGCACTCATCTGCGCTTCTTGGATGTTGGCGC
CGTGCCTGCTGTGGACGATGAGACGCTCTCGTACCTCGTGCGAGAAAGAG
GCACTTCGCTCCGCACTCTGGTTTTGTCGCATTGTACTAAGCTGTCGGAC
ACTGCTATGGGCGAGATAGGAGCGCACTGCAGCGCATTGATGTCGCTCAC
TGTGCGTTCGCTTTCGTCCGTGACTGATCGTGGACTGCAGAAGTTATGCG
AAAACATTGGTCATAGACTGCAAATCCTTGACGTTCTGGACTGCACGGGG
CTCACAATGGGAGGTTACTTCTCTACCATGGAGGCGCATTGTCCCCATGT
GTACCGCTATCTGCAGGAGAGTAACTACGTGGAGCATTTGGGAGAGCGTT
GCTTACGCGATAACATCATCGCCACTATGCCGGGACTTATATATCGCATT
TCGGCGACTGATGCTATTCGACGTCTGCCGGCTCTGTACTTCCTGCTGCT
GGATGAGAGCACGTTGCGCCCGTTCCGCGTTTCTGTTCAGAGCAAGTCTC
TGAATTTGAGCGACTTTGGTACAGTGCTTATCTCCAACTTTGGCAAGAAG
CCTACTCAGAAGACAAGAAGTGTATTGCTGAGCCGATTCGGTTACGACAG
CCCCTGTGACTCGGAATCTGATGACGAATCATGTGCCAGGGAGTGA