Gcaud1447.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1447.t1
Unique Name	Gcaud1447.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1021_length_14946_cov_4.146752	contig	NODE_1021_length_14946_cov_4.146752:7625..9967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8932.XP_005509225.1
Preferred name	THYN1
PFAMs	EVE
Max annot lvl	33208\|Metazoa
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue	9.13e-44
EggNOG OGs	COG2947@1\|root,KOG3383@2759\|Eukaryota,39R2K@33154\|Opisthokonta,3B9WQ@33208\|Metazoa,3D0C1@33213\|Bilateria,4840S@7711\|Chordata,4924A@7742\|Vertebrata,4GQ70@8782\|Aves
Description	Thymocyte nuclear protein 1
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1447	Gcaud1447	Gracilaria caudata M_176_S67 male	gene	NODE_1021_length_14946_cov_4.146752 7625..9967 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1447.t1.start1	Gcaud1447.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1021_length_14946_cov_4.146752 7625..7627 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1447.t1.CDS1	Gcaud1447.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 7625..8102 +
Gcaud1447.t1.CDS2	Gcaud1447.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 8171..8393 +
Gcaud1447.t1.CDS3	Gcaud1447.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 8607..8790 +
Gcaud1447.t1.CDS4	Gcaud1447.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 8944..8953 +
Gcaud1447.t1.CDS5	Gcaud1447.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 9053..9254 +
Gcaud1447.t1.CDS6	Gcaud1447.t1.CDS6	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 9331..9967 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1447.t1.exon1	Gcaud1447.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 7625..8102 +
Gcaud1447.t1.exon2	Gcaud1447.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 8171..8393 +
Gcaud1447.t1.exon3	Gcaud1447.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 8607..8790 +
Gcaud1447.t1.exon4	Gcaud1447.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 8944..8953 +
Gcaud1447.t1.exon5	Gcaud1447.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 9053..9254 +
Gcaud1447.t1.exon6	Gcaud1447.t1.exon6	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 9331..9967 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1447.t1.intron1	Gcaud1447.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1021_length_14946_cov_4.146752 8103..8170 +
Gcaud1447.t1.intron2	Gcaud1447.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1021_length_14946_cov_4.146752 8394..8606 +
Gcaud1447.t1.intron3	Gcaud1447.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1021_length_14946_cov_4.146752 8791..8943 +
Gcaud1447.t1.intron4	Gcaud1447.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_1021_length_14946_cov_4.146752 8954..9052 +
Gcaud1447.t1.intron5	Gcaud1447.t1.intron5	Gracilaria caudata M_176_S67 male	intron	NODE_1021_length_14946_cov_4.146752 9255..9330 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1447.t1.stop1	Gcaud1447.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1021_length_14946_cov_4.146752 9965..9967 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1447.t1	Gcaud1447.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1021_length_14946_cov_4.146752 7625..9967 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+
coding sequence from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+

mRNA sequence

>Gcaud1447.t1 ID=Gcaud1447.t1|Name=Gcaud1447.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=578bp
MAVTRSSARAEPRRSSARTSTPTTKPSNKRKKTRQSLTPAKKSRNENDQR
HTIAESQPQPADSSHSPTTHTKECPTQYYLFKSESESRMQNGHEMKFSID
DLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGV
VRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLD
QIKAEPDLANMQLVKRSRISVQRVTPDEWNVVHGSHSILHFYGFLLAYSS
INLLSLALNDIQMTFLHRDLVIRVLAPMNILQIRSSFVVEWINRFSIFSV
KMDILSSDSVMCDDSITSFLPSKVFHHHVCLKYLRTCTVVPSQTLDQAEE
SQLHDKSVNAEHTSEPHLTVTMSSSNEAEEEYMRMRMASTNISDDNQPEV
DPKAQLDDTITADAARTLKEEGNALYKSGHFSEAIEKYTLASSSAHASQD
DRAVYFANRAAAHLKLQNFEAVVKDASAALELKPGYVKALSRRREAREAL
KEWRGALKDAQELNAPASDIKRLQFLADEKDKKDQAEALDSLKGLGNSIL
SNFGMSLDDFAMDKDPETGSYSISMKK*

spliced messenger RNA

>Gcaud1447.t1 ID=Gcaud1447.t1|Name=Gcaud1447.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCACGCGCTCTTCCGCACGCGCCGAGCCCCGGCGCTCGTCCGC
TCGTACCTCCACTCCCACAACAAAGCCATCGAATAAGCGCAAAAAGACTC
GACAGTCCCTCACTCCAGCAAAAAAGTCGCGTAACGAAAATGATCAAAGG
CATACGATCGCCGAATCTCAACCGCAACCCGCAGATTCTTCTCACAGTCC
AACCACTCATACGAAAGAGTGTCCCACCCAATACTACTTGTTCAAATCTG
AGTCGGAGTCGCGCATGCAGAACGGACATGAGATGAAATTCTCTATCGAC
GATCTTCAACGCGAGCCCGATGCCACCACGCACTGGGATGGGGTACGAAA
CGCAGAGGCGTGCAAATGTATGCGAGGTATGCAAAAGGGCGACATGGCTT
TCTTCTATCACTCCAACACCAAGAAGACAAGACCATCAATCGTGGGCGTT
GTGCGCGTAGTGTCAGATCCGTATCCAGACCACACTGCGTTTGATAAAAA
TGACCCGCATTATGACCCGCGCAGCAAGTCAGAGGCGCCGCGATGGTATA
TGGTGGATGTACAGTTCGTGCGCAAGTTCCACACCGCAATCACGCTCGAC
CAAATCAAAGCAGAGCCCGACTTGGCCAACATGCAACTTGTGAAACGTTC
TCGCATTTCTGTGCAACGCGTTACTCCAGATGAGTGGAATGTGGTGCACG
GTTCGCATTCAATACTGCACTTTTATGGTTTTCTGTTGGCGTATTCGTCT
ATCAACCTCTTGTCATTGGCACTAAACGACATCCAGATGACATTCTTGCA
TCGAGATTTGGTGATTCGCGTATTGGCACCCATGAATATACTGCAGATCC
GTAGCAGTTTCGTCGTTGAGTGGATAAATCGTTTTTCTATTTTTTCTGTC
AAAATGGACATTCTGTCTTCCGACTCCGTAATGTGCGACGACTCCATCAC
GTCTTTCTTACCTTCGAAGGTATTTCATCATCACGTCTGTCTGAAGTACC
TTCGTACCTGTACCGTCGTCCCTTCGCAGACTCTTGACCAGGCCGAAGAA
TCTCAGCTTCACGACAAAAGCGTCAACGCTGAACACACATCGGAGCCCCA
TTTAACGGTAACAATGTCTTCGTCAAACGAAGCAGAAGAGGAATACATGC
GCATGCGCATGGCTTCCACAAACATCTCTGATGACAATCAACCTGAGGTC
GACCCCAAGGCACAATTGGACGATACGATAACAGCTGATGCCGCTCGCAC
ACTGAAAGAAGAGGGGAACGCCTTGTATAAATCTGGACATTTCTCAGAAG
CCATTGAGAAGTACACGCTCGCTTCCAGCAGTGCCCACGCAAGTCAAGAC
GATCGAGCCGTATACTTTGCAAATCGTGCTGCTGCCCATCTAAAGTTGCA
GAACTTTGAAGCCGTTGTCAAAGACGCTTCTGCCGCGCTGGAACTGAAGC
CCGGTTACGTGAAGGCCCTTAGCAGAAGACGAGAGGCTCGTGAAGCGTTG
AAGGAATGGCGAGGGGCACTGAAAGACGCTCAGGAACTGAACGCTCCAGC
ATCCGACATCAAGCGATTGCAGTTCCTTGCTGATGAAAAAGATAAAAAGG
ATCAAGCAGAGGCACTGGACTCCCTTAAGGGGCTCGGCAACTCGATCTTG
TCAAACTTTGGCATGAGTCTTGACGATTTTGCGATGGATAAGGATCCAGA
GACGGGCTCCTATAGTATTAGCATGAAGAAATAG

protein sequence of Gcaud1447.t1

>Gcaud1447.t1 ID=Gcaud1447.t1|Name=Gcaud1447.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=578bp
MAVTRSSARAEPRRSSARTSTPTTKPSNKRKKTRQSLTPAKKSRNENDQR
HTIAESQPQPADSSHSPTTHTKECPTQYYLFKSESESRMQNGHEMKFSID
DLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGV
VRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLD
QIKAEPDLANMQLVKRSRISVQRVTPDEWNVVHGSHSILHFYGFLLAYSS
INLLSLALNDIQMTFLHRDLVIRVLAPMNILQIRSSFVVEWINRFSIFSV
KMDILSSDSVMCDDSITSFLPSKVFHHHVCLKYLRTCTVVPSQTLDQAEE
SQLHDKSVNAEHTSEPHLTVTMSSSNEAEEEYMRMRMASTNISDDNQPEV
DPKAQLDDTITADAARTLKEEGNALYKSGHFSEAIEKYTLASSSAHASQD
DRAVYFANRAAAHLKLQNFEAVVKDASAALELKPGYVKALSRRREAREAL
KEWRGALKDAQELNAPASDIKRLQFLADEKDKKDQAEALDSLKGLGNSIL
SNFGMSLDDFAMDKDPETGSYSISMKK*

mRNA from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+

Legend: start_codonpolypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1447.t1 ID=Gcaud1447.t1|Name=Gcaud1447.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2343bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+ (Gracilaria caudata M_176_S67 male)
ATGGCCGTCACGCGCTCTTCCGCACGCGCCGAGCCCCGGCGCTCGTCCGC
TCGTACCTCCACTCCCACAACAAAGCCATCGAATAAGCGCAAAAAGACTC
GACAGTCCCTCACTCCAGCAAAAAAGTCGCGTAACGAAAATGATCAAAGG
CATACGATCGCCGAATCTCAACCGCAACCCGCAGATTCTTCTCACAGTCC
AACCACTCATACGAAAGAGTGTCCCACCCAATACTACTTGTTCAAATCTG
AGTCGGAGTCGCGCATGCAGAACGGACATGAGATGAAATTCTCTATCGAC
GATCTTCAACGCGAGCCCGATGCCACCACGCACTGGGATGGGGTACGAAA
CGCAGAGGCGTGCAAATGTATGCGAGGTATGCAAAAGGGCGACATGGCTT
TCTTCTATCACTCCAACACCAAGAAGACAAGACCATCAATCGTGGGCGTT
GTGCGCGTAGTGTCAGATCCGTATCCAGGTAAGTTGTTTGCACTGCAGTA
TTCAGTCATCGTCGTCTAACCAACTGTTGCTCATATGCTCTTTCAGACCA
CACTGCGTTTGATAAAAATGACCCGCATTATGACCCGCGCAGCAAGTCAG
AGGCGCCGCGATGGTATATGGTGGATGTACAGTTCGTGCGCAAGTTCCAC
ACCGCAATCACGCTCGACCAAATCAAAGCAGAGCCCGACTTGGCCAACAT
GCAACTTGTGAAACGTTCTCGCATTTCTGTGCAACGCGTTACTCCAGATG
AGTGGAATGTGGTGCACGGGTTAGCTACGTAGCTCTGACCTTCGCACCTT
CCAATCTATTCAGCTTTTTGAGTTGTGCAATCGCGTGCCCTGCTATGTCT
TTGTTGGCCAACTCCACTCTCCCATGTGTCACGCTTCGCATCTATTTTGG
GGCCATACCACCACACACACAACCTCCCCATGTCTATCTTCGCCTACTTC
CCTAATAAGTCCAATGTACCATTGAAGCACAGTTCGCATTCAATACTGCA
CTTTTATGGTTTTCTGTTGGCGTATTCGTCTATCAACCTCTTGTCATTGG
CACTAAACGACATCCAGATGACATTCTTGCATCGAGATTTGGTGATTCGC
GTATTGGCACCCATGAATATACTGCAGATCCGTAGCAGTTTCGTCGTTGA
GTGGATAAATCGTTTTGTAAGTTGTGCCTCCGCGCCATCGACGTAATTGT
TTTGCGTTGCATCAGCAACGAGCTGGTGGTCTTCGTCATCATGACTTCAG
CAGTGCGGAATCAGCATTTTACAGTAGTTCTGCCCTCGACGTTACAAATT
CTGACACACTGTTAAATAGTCTATTTTTTGTTTGTGATGCCACGTTTTTA
GCTTTTACGAAGGGTACACGTTAAAATTGCAAATATGTTCTGCTGAATAT
AATTAAAAAAAAGATCTCTTTTTCGCAGCTGTCAAAATGGACATTCTGTC
TTCCGACTCCGTAATGTGCGACGACTCCATCACGTCTTTCTTACCTTCGA
AGGTATTTCATCATCACGTCTGTCTGAAGTACCTTCGTACCTGTACCGTC
GTCCCTTCGCAGACTCTTGACCAGGCCGAAGAATCTCAGCTTCACGACAA
AAGCGTCAACGCTGAACACACATCGGAGCCGTGATCATCACGACATCACG
TCACCACGTCTCCACGCCAGCTAATCTAAGCTTTCATTCTATCCTGCACT
TGACAGCCATTTAACGGTAACAATGTCTTCGTCAAACGAAGCAGAAGAGG
AATACATGCGCATGCGCATGGCTTCCACAAACATCTCTGATGACAATCAA
CCTGAGGTCGACCCCAAGGCACAATTGGACGATACGATAACAGCTGATGC
CGCTCGCACACTGAAAGAAGAGGGGAACGCCTTGTATAAATCTGGACATT
TCTCAGAAGCCATTGAGAAGTACACGCTCGCTTCCAGCAGTGCCCACGCA
AGTCAAGACGATCGAGCCGTATACTTTGCAAATCGTGCTGCTGCCCATCT
AAAGTTGCAGAACTTTGAAGCCGTTGTCAAAGACGCTTCTGCCGCGCTGG
AACTGAAGCCCGGTTACGTGAAGGCCCTTAGCAGAAGACGAGAGGCTCGT
GAAGCGTTGAAGGAATGGCGAGGGGCACTGAAAGACGCTCAGGAACTGAA
CGCTCCAGCATCCGACATCAAGCGATTGCAGTTCCTTGCTGATGAAAAAG
ATAAAAAGGATCAAGCAGAGGCACTGGACTCCCTTAAGGGGCTCGGCAAC
TCGATCTTGTCAAACTTTGGCATGAGTCTTGACGATTTTGCGATGGATAA
GGATCCAGAGACGGGCTCCTATAGTATTAGCATGAAGAAATAG

Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+

>Gcaud1447.t1 ID=Gcaud1447.t1|Name=Gcaud1447.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1734bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:7625..9967+ (Gracilaria caudata M_176_S67 male)
ATGGCCGTCACGCGCTCTTCCGCACGCGCCGAGCCCCGGCGCTCGTCCGC
TCGTACCTCCACTCCCACAACAAAGCCATCGAATAAGCGCAAAAAGACTC
GACAGTCCCTCACTCCAGCAAAAAAGTCGCGTAACGAAAATGATCAAAGG
CATACGATCGCCGAATCTCAACCGCAACCCGCAGATTCTTCTCACAGTCC
AACCACTCATACGAAAGAGTGTCCCACCCAATACTACTTGTTCAAATCTG
AGTCGGAGTCGCGCATGCAGAACGGACATGAGATGAAATTCTCTATCGAC
GATCTTCAACGCGAGCCCGATGCCACCACGCACTGGGATGGGGTACGAAA
CGCAGAGGCGTGCAAATGTATGCGAGGTATGCAAAAGGGCGACATGGCTT
TCTTCTATCACTCCAACACCAAGAAGACAAGACCATCAATCGTGGGCGTT
GTGCGCGTAGTGTCAGATCCGTATCCAGACCACACTGCGTTTGATAAAAA
TGACCCGCATTATGACCCGCGCAGCAAGTCAGAGGCGCCGCGATGGTATA
TGGTGGATGTACAGTTCGTGCGCAAGTTCCACACCGCAATCACGCTCGAC
CAAATCAAAGCAGAGCCCGACTTGGCCAACATGCAACTTGTGAAACGTTC
TCGCATTTCTGTGCAACGCGTTACTCCAGATGAGTGGAATGTGGTGCACG
GTTCGCATTCAATACTGCACTTTTATGGTTTTCTGTTGGCGTATTCGTCT
ATCAACCTCTTGTCATTGGCACTAAACGACATCCAGATGACATTCTTGCA
TCGAGATTTGGTGATTCGCGTATTGGCACCCATGAATATACTGCAGATCC
GTAGCAGTTTCGTCGTTGAGTGGATAAATCGTTTTTCTATTTTTTCTGTC
AAAATGGACATTCTGTCTTCCGACTCCGTAATGTGCGACGACTCCATCAC
GTCTTTCTTACCTTCGAAGGTATTTCATCATCACGTCTGTCTGAAGTACC
TTCGTACCTGTACCGTCGTCCCTTCGCAGACTCTTGACCAGGCCGAAGAA
TCTCAGCTTCACGACAAAAGCGTCAACGCTGAACACACATCGGAGCCCCA
TTTAACGGTAACAATGTCTTCGTCAAACGAAGCAGAAGAGGAATACATGC
GCATGCGCATGGCTTCCACAAACATCTCTGATGACAATCAACCTGAGGTC
GACCCCAAGGCACAATTGGACGATACGATAACAGCTGATGCCGCTCGCAC
ACTGAAAGAAGAGGGGAACGCCTTGTATAAATCTGGACATTTCTCAGAAG
CCATTGAGAAGTACACGCTCGCTTCCAGCAGTGCCCACGCAAGTCAAGAC
GATCGAGCCGTATACTTTGCAAATCGTGCTGCTGCCCATCTAAAGTTGCA
GAACTTTGAAGCCGTTGTCAAAGACGCTTCTGCCGCGCTGGAACTGAAGC
CCGGTTACGTGAAGGCCCTTAGCAGAAGACGAGAGGCTCGTGAAGCGTTG
AAGGAATGGCGAGGGGCACTGAAAGACGCTCAGGAACTGAACGCTCCAGC
ATCCGACATCAAGCGATTGCAGTTCCTTGCTGATGAAAAAGATAAAAAGG
ATCAAGCAGAGGCACTGGACTCCCTTAAGGGGCTCGGCAACTCGATCTTG
TCAAACTTTGGCATGAGTCTTGACGATTTTGCGATGGATAAGGATCCAGA
GACGGGCTCCTATAGTATTAGCATGAAGAAATAG