Gcaud2387.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2387.t1
Unique Name	Gcaud2387.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	654

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_830_length_17382_cov_5.634087	contig	NODE_830_length_17382_cov_5.634087:9015..10976 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29760.VIT_11s0016g03230.t01
PFAMs	Golgin_A5
Max annot lvl	35493\|Streptophyta
GOs	GO:0000139,GO:0000301,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0006810,GO:0006891,GO:0006996,GO:0007030,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0031090,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0071840,GO:0098588,GO:0098791
Evalue	1.75e-08
EggNOG OGs	28KRB@1\|root,2QT7E@2759\|Eukaryota,37QSA@33090\|Viridiplantae,3G82N@35493\|Streptophyta
Description	golgin candidate
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2387	Gcaud2387	Gracilaria caudata M_176_S67 male	gene	NODE_830_length_17382_cov_5.634087 9015..10976 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2387.t1.stop1	Gcaud2387.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_830_length_17382_cov_5.634087 9015..9017 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2387.t1.CDS1	Gcaud2387.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_830_length_17382_cov_5.634087 9015..10976 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2387.t1.exon1	Gcaud2387.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_830_length_17382_cov_5.634087 9015..10976 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2387.t1.start1	Gcaud2387.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_830_length_17382_cov_5.634087 10974..10976 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2387.t1	Gcaud2387.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_830_length_17382_cov_5.634087 9015..10976 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_830_length_17382_cov_5.634087:9015..10976-
coding sequence from alignment at NODE_830_length_17382_cov_5.634087:9015..10976-

mRNA sequence

>Gcaud2387.t1 ID=Gcaud2387.t1|Name=Gcaud2387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=654bp
MFISKALRRAEVFLEQVDESVAQASRRLVVEGATGEVDEDDIYSSEDESA
QQSRASAIPRAEPRPRATVVEAERASDEEGSSGEGWGDDVEIDESLIPDA
SASDQTVKHETHSNKATGEVQSELQSEAKHVVSSKPLPGENVRAAQIPES
VNHPRPKAQGDQPEQKTEDHDRSKDDGYIGALEAENEELRKEFESLEIEY
DKIRKEKGKLVKNLKRMKDIVNEMDETLQEKSAEARALETELIAANEKIA
ALETETRQSEARGKDGIDSLRKELTAKIESLEGELSEANQECQTLTEEKE
RLNEALLQGHEADLATADGARQEATQAHRAYEAETLAHRETRKLAKEREE
TLQAEAAVATKALADAQRKAEECIVATSNAKSSQRAAEAKLLTVTKARDV
AFARVEDLEQALSFYEERNGNEGNRQNEAEEMQQTISELENALEAKNVEL
NRLEGEVEALRASFRSRKDAISPRTSGRGETSPSPEVELKLRHMADATLR
KQAQLEVLRSENRALQHQLSTERKRTREAQAMAAAASTSRSAIRGGFRGI
LDTGDDGRGDRLYGVRDGPLARFRTPRSWPRSVSKVIIGLDQFSAHALAF
LRKEPFLRLVLLLYIVGLHLFVYSLLHWHVDTVSGGNAHESIASAKGSVH
AGH*

spliced messenger RNA

>Gcaud2387.t1 ID=Gcaud2387.t1|Name=Gcaud2387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:9015..10976- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTATTTCGAAGGCGTTACGGCGCGCGGAAGTATTCCTTGAACAAGT
GGACGAGAGTGTTGCGCAGGCTTCAAGGAGGCTTGTTGTTGAAGGAGCAA
CTGGAGAAGTTGATGAAGATGACATTTATTCCTCGGAAGACGAGAGCGCT
CAACAAAGTCGAGCGTCTGCTATTCCTCGCGCTGAACCGCGTCCAAGGGC
AACTGTTGTCGAAGCCGAACGAGCCTCTGATGAAGAAGGTTCAAGCGGGG
AAGGTTGGGGTGACGATGTTGAGATCGATGAAAGCTTAATCCCAGATGCA
TCCGCTTCTGACCAGACCGTAAAGCACGAAACTCATTCGAACAAAGCAAC
TGGTGAAGTGCAGTCAGAGCTACAATCCGAAGCGAAGCACGTGGTATCTT
CGAAACCCCTGCCAGGTGAAAATGTTCGTGCTGCTCAAATCCCCGAATCT
GTGAATCACCCAAGACCCAAAGCTCAGGGTGACCAACCCGAACAAAAGAC
GGAAGATCACGATCGATCAAAAGACGACGGGTACATTGGAGCTCTGGAAG
CTGAGAACGAGGAACTTAGAAAGGAATTTGAATCTCTTGAAATTGAGTAC
GATAAGATACGCAAGGAGAAAGGAAAGCTTGTTAAGAATCTCAAGAGAAT
GAAGGACATTGTCAACGAAATGGATGAGACTCTTCAAGAGAAGTCTGCGG
AGGCCCGTGCTCTCGAAACAGAATTAATCGCCGCAAACGAAAAGATTGCT
GCGCTTGAAACCGAAACTCGACAAAGTGAAGCACGTGGAAAGGATGGCAT
AGATTCTTTGCGCAAGGAGTTGACAGCAAAAATCGAGTCATTGGAAGGAG
AACTCAGCGAAGCTAATCAAGAGTGCCAGACGCTAACGGAAGAGAAGGAA
CGCCTTAACGAGGCACTGCTGCAAGGACATGAGGCAGATTTGGCTACAGC
CGACGGTGCTCGTCAGGAGGCCACCCAGGCACATCGGGCGTACGAGGCTG
AGACACTTGCACATCGAGAGACAAGAAAGCTTGCTAAGGAGAGAGAAGAA
ACGCTTCAAGCTGAGGCTGCAGTTGCAACAAAGGCTTTGGCCGATGCGCA
AAGAAAAGCAGAAGAATGTATAGTAGCGACCAGTAACGCAAAGTCGAGCC
AAAGAGCTGCGGAAGCAAAATTGTTGACCGTGACGAAGGCTAGAGACGTC
GCTTTTGCCCGAGTCGAAGACCTGGAGCAAGCGCTGAGCTTCTATGAAGA
ACGTAATGGGAATGAAGGTAACAGGCAAAACGAAGCTGAAGAAATGCAGC
AGACAATTTCTGAACTGGAGAATGCGCTTGAAGCAAAAAACGTTGAACTC
AACAGATTAGAAGGTGAGGTCGAGGCGTTGCGCGCTTCATTTAGATCTAG
AAAAGACGCAATATCGCCTCGAACAAGTGGGAGAGGAGAGACAAGCCCCT
CACCAGAGGTAGAGTTGAAGTTACGACACATGGCAGACGCGACCCTGCGG
AAGCAAGCCCAACTGGAAGTTCTGCGATCTGAAAACAGGGCACTCCAACA
TCAGCTAAGCACTGAACGCAAACGTACACGAGAAGCGCAGGCTATGGCAG
CAGCAGCTTCGACTTCGCGCTCTGCAATAAGAGGTGGGTTCAGGGGGATA
CTTGACACTGGCGACGACGGACGAGGTGATCGTCTGTATGGTGTGCGGGA
CGGCCCACTAGCACGATTTCGAACTCCGAGAAGCTGGCCGAGGTCTGTGT
CGAAGGTTATCATCGGTTTGGACCAGTTCTCAGCACACGCTTTGGCCTTC
TTGAGGAAAGAGCCGTTTCTAAGGCTTGTGCTGCTGTTGTATATTGTCGG
ACTACATTTGTTTGTGTACAGCTTGCTGCACTGGCATGTGGATACCGTTT
CTGGTGGAAATGCGCACGAAAGCATAGCGTCGGCAAAAGGCAGTGTGCAT
GCAGGACACTAG

protein sequence of Gcaud2387.t1

>Gcaud2387.t1 ID=Gcaud2387.t1|Name=Gcaud2387.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=654bp
MFISKALRRAEVFLEQVDESVAQASRRLVVEGATGEVDEDDIYSSEDESA
QQSRASAIPRAEPRPRATVVEAERASDEEGSSGEGWGDDVEIDESLIPDA
SASDQTVKHETHSNKATGEVQSELQSEAKHVVSSKPLPGENVRAAQIPES
VNHPRPKAQGDQPEQKTEDHDRSKDDGYIGALEAENEELRKEFESLEIEY
DKIRKEKGKLVKNLKRMKDIVNEMDETLQEKSAEARALETELIAANEKIA
ALETETRQSEARGKDGIDSLRKELTAKIESLEGELSEANQECQTLTEEKE
RLNEALLQGHEADLATADGARQEATQAHRAYEAETLAHRETRKLAKEREE
TLQAEAAVATKALADAQRKAEECIVATSNAKSSQRAAEAKLLTVTKARDV
AFARVEDLEQALSFYEERNGNEGNRQNEAEEMQQTISELENALEAKNVEL
NRLEGEVEALRASFRSRKDAISPRTSGRGETSPSPEVELKLRHMADATLR
KQAQLEVLRSENRALQHQLSTERKRTREAQAMAAAASTSRSAIRGGFRGI
LDTGDDGRGDRLYGVRDGPLARFRTPRSWPRSVSKVIIGLDQFSAHALAF
LRKEPFLRLVLLLYIVGLHLFVYSLLHWHVDTVSGGNAHESIASAKGSVH
AGH*

mRNA from alignment at NODE_830_length_17382_cov_5.634087:9015..10976-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2387.t1 ID=Gcaud2387.t1|Name=Gcaud2387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:9015..10976- (Gracilaria caudata M_176_S67 male)
ATGTTTATTTCGAAGGCGTTACGGCGCGCGGAAGTATTCCTTGAACAAGT
GGACGAGAGTGTTGCGCAGGCTTCAAGGAGGCTTGTTGTTGAAGGAGCAA
CTGGAGAAGTTGATGAAGATGACATTTATTCCTCGGAAGACGAGAGCGCT
CAACAAAGTCGAGCGTCTGCTATTCCTCGCGCTGAACCGCGTCCAAGGGC
AACTGTTGTCGAAGCCGAACGAGCCTCTGATGAAGAAGGTTCAAGCGGGG
AAGGTTGGGGTGACGATGTTGAGATCGATGAAAGCTTAATCCCAGATGCA
TCCGCTTCTGACCAGACCGTAAAGCACGAAACTCATTCGAACAAAGCAAC
TGGTGAAGTGCAGTCAGAGCTACAATCCGAAGCGAAGCACGTGGTATCTT
CGAAACCCCTGCCAGGTGAAAATGTTCGTGCTGCTCAAATCCCCGAATCT
GTGAATCACCCAAGACCCAAAGCTCAGGGTGACCAACCCGAACAAAAGAC
GGAAGATCACGATCGATCAAAAGACGACGGGTACATTGGAGCTCTGGAAG
CTGAGAACGAGGAACTTAGAAAGGAATTTGAATCTCTTGAAATTGAGTAC
GATAAGATACGCAAGGAGAAAGGAAAGCTTGTTAAGAATCTCAAGAGAAT
GAAGGACATTGTCAACGAAATGGATGAGACTCTTCAAGAGAAGTCTGCGG
AGGCCCGTGCTCTCGAAACAGAATTAATCGCCGCAAACGAAAAGATTGCT
GCGCTTGAAACCGAAACTCGACAAAGTGAAGCACGTGGAAAGGATGGCAT
AGATTCTTTGCGCAAGGAGTTGACAGCAAAAATCGAGTCATTGGAAGGAG
AACTCAGCGAAGCTAATCAAGAGTGCCAGACGCTAACGGAAGAGAAGGAA
CGCCTTAACGAGGCACTGCTGCAAGGACATGAGGCAGATTTGGCTACAGC
CGACGGTGCTCGTCAGGAGGCCACCCAGGCACATCGGGCGTACGAGGCTG
AGACACTTGCACATCGAGAGACAAGAAAGCTTGCTAAGGAGAGAGAAGAA
ACGCTTCAAGCTGAGGCTGCAGTTGCAACAAAGGCTTTGGCCGATGCGCA
AAGAAAAGCAGAAGAATGTATAGTAGCGACCAGTAACGCAAAGTCGAGCC
AAAGAGCTGCGGAAGCAAAATTGTTGACCGTGACGAAGGCTAGAGACGTC
GCTTTTGCCCGAGTCGAAGACCTGGAGCAAGCGCTGAGCTTCTATGAAGA
ACGTAATGGGAATGAAGGTAACAGGCAAAACGAAGCTGAAGAAATGCAGC
AGACAATTTCTGAACTGGAGAATGCGCTTGAAGCAAAAAACGTTGAACTC
AACAGATTAGAAGGTGAGGTCGAGGCGTTGCGCGCTTCATTTAGATCTAG
AAAAGACGCAATATCGCCTCGAACAAGTGGGAGAGGAGAGACAAGCCCCT
CACCAGAGGTAGAGTTGAAGTTACGACACATGGCAGACGCGACCCTGCGG
AAGCAAGCCCAACTGGAAGTTCTGCGATCTGAAAACAGGGCACTCCAACA
TCAGCTAAGCACTGAACGCAAACGTACACGAGAAGCGCAGGCTATGGCAG
CAGCAGCTTCGACTTCGCGCTCTGCAATAAGAGGTGGGTTCAGGGGGATA
CTTGACACTGGCGACGACGGACGAGGTGATCGTCTGTATGGTGTGCGGGA
CGGCCCACTAGCACGATTTCGAACTCCGAGAAGCTGGCCGAGGTCTGTGT
CGAAGGTTATCATCGGTTTGGACCAGTTCTCAGCACACGCTTTGGCCTTC
TTGAGGAAAGAGCCGTTTCTAAGGCTTGTGCTGCTGTTGTATATTGTCGG
ACTACATTTGTTTGTGTACAGCTTGCTGCACTGGCATGTGGATACCGTTT
CTGGTGGAAATGCGCACGAAAGCATAGCGTCGGCAAAAGGCAGTGTGCAT
GCAGGACACTAG

Coding sequence (CDS) from alignment at NODE_830_length_17382_cov_5.634087:9015..10976-

>Gcaud2387.t1 ID=Gcaud2387.t1|Name=Gcaud2387.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1962bp|location=Sequence derived from alignment at NODE_830_length_17382_cov_5.634087:9015..10976- (Gracilaria caudata M_176_S67 male)
ATGTTTATTTCGAAGGCGTTACGGCGCGCGGAAGTATTCCTTGAACAAGT
GGACGAGAGTGTTGCGCAGGCTTCAAGGAGGCTTGTTGTTGAAGGAGCAA
CTGGAGAAGTTGATGAAGATGACATTTATTCCTCGGAAGACGAGAGCGCT
CAACAAAGTCGAGCGTCTGCTATTCCTCGCGCTGAACCGCGTCCAAGGGC
AACTGTTGTCGAAGCCGAACGAGCCTCTGATGAAGAAGGTTCAAGCGGGG
AAGGTTGGGGTGACGATGTTGAGATCGATGAAAGCTTAATCCCAGATGCA
TCCGCTTCTGACCAGACCGTAAAGCACGAAACTCATTCGAACAAAGCAAC
TGGTGAAGTGCAGTCAGAGCTACAATCCGAAGCGAAGCACGTGGTATCTT
CGAAACCCCTGCCAGGTGAAAATGTTCGTGCTGCTCAAATCCCCGAATCT
GTGAATCACCCAAGACCCAAAGCTCAGGGTGACCAACCCGAACAAAAGAC
GGAAGATCACGATCGATCAAAAGACGACGGGTACATTGGAGCTCTGGAAG
CTGAGAACGAGGAACTTAGAAAGGAATTTGAATCTCTTGAAATTGAGTAC
GATAAGATACGCAAGGAGAAAGGAAAGCTTGTTAAGAATCTCAAGAGAAT
GAAGGACATTGTCAACGAAATGGATGAGACTCTTCAAGAGAAGTCTGCGG
AGGCCCGTGCTCTCGAAACAGAATTAATCGCCGCAAACGAAAAGATTGCT
GCGCTTGAAACCGAAACTCGACAAAGTGAAGCACGTGGAAAGGATGGCAT
AGATTCTTTGCGCAAGGAGTTGACAGCAAAAATCGAGTCATTGGAAGGAG
AACTCAGCGAAGCTAATCAAGAGTGCCAGACGCTAACGGAAGAGAAGGAA
CGCCTTAACGAGGCACTGCTGCAAGGACATGAGGCAGATTTGGCTACAGC
CGACGGTGCTCGTCAGGAGGCCACCCAGGCACATCGGGCGTACGAGGCTG
AGACACTTGCACATCGAGAGACAAGAAAGCTTGCTAAGGAGAGAGAAGAA
ACGCTTCAAGCTGAGGCTGCAGTTGCAACAAAGGCTTTGGCCGATGCGCA
AAGAAAAGCAGAAGAATGTATAGTAGCGACCAGTAACGCAAAGTCGAGCC
AAAGAGCTGCGGAAGCAAAATTGTTGACCGTGACGAAGGCTAGAGACGTC
GCTTTTGCCCGAGTCGAAGACCTGGAGCAAGCGCTGAGCTTCTATGAAGA
ACGTAATGGGAATGAAGGTAACAGGCAAAACGAAGCTGAAGAAATGCAGC
AGACAATTTCTGAACTGGAGAATGCGCTTGAAGCAAAAAACGTTGAACTC
AACAGATTAGAAGGTGAGGTCGAGGCGTTGCGCGCTTCATTTAGATCTAG
AAAAGACGCAATATCGCCTCGAACAAGTGGGAGAGGAGAGACAAGCCCCT
CACCAGAGGTAGAGTTGAAGTTACGACACATGGCAGACGCGACCCTGCGG
AAGCAAGCCCAACTGGAAGTTCTGCGATCTGAAAACAGGGCACTCCAACA
TCAGCTAAGCACTGAACGCAAACGTACACGAGAAGCGCAGGCTATGGCAG
CAGCAGCTTCGACTTCGCGCTCTGCAATAAGAGGTGGGTTCAGGGGGATA
CTTGACACTGGCGACGACGGACGAGGTGATCGTCTGTATGGTGTGCGGGA
CGGCCCACTAGCACGATTTCGAACTCCGAGAAGCTGGCCGAGGTCTGTGT
CGAAGGTTATCATCGGTTTGGACCAGTTCTCAGCACACGCTTTGGCCTTC
TTGAGGAAAGAGCCGTTTCTAAGGCTTGTGCTGCTGTTGTATATTGTCGG
ACTACATTTGTTTGTGTACAGCTTGCTGCACTGGCATGTGGATACCGTTT
CTGGTGGAAATGCGCACGAAAGCATAGCGTCGGCAAAAGGCAGTGTGCAT
GCAGGACACTAG