Gcaud1874.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1874.t1
Unique Name	Gcaud1874.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_823_length_17514_cov_4.507834	contig	NODE_823_length_17514_cov_4.507834:9386..10720 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1874	Gcaud1874	Gracilaria caudata M_176_S67 male	gene	NODE_823_length_17514_cov_4.507834 9386..10720 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1874.t1.start1	Gcaud1874.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_823_length_17514_cov_4.507834 9386..9388 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1874.t1.CDS1	Gcaud1874.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_823_length_17514_cov_4.507834 9386..10720 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1874.t1.exon1	Gcaud1874.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_823_length_17514_cov_4.507834 9386..10720 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1874.t1.stop1	Gcaud1874.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_823_length_17514_cov_4.507834 10718..10720 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1874.t1	Gcaud1874.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_823_length_17514_cov_4.507834 9386..10720 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+
coding sequence from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+

mRNA sequence

>Gcaud1874.t1 ID=Gcaud1874.t1|Name=Gcaud1874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=445bp
MLASNSPGLVGRTHYEFADASRKIQGHSTQVFLACRCLDYGCREAMVLEP
RQVKSEDGKQSELVCTYPRVGGKWRDCHTELLRLQEINVDDVHSIPDSTD
FSVELGPNNFWRAIGRRRYIRDISRSELDRLEEVIFEDILEDFKKKVNAS
STGEFYVFGNDTAGDYQFPDKSAVEVGDSEDCAKLFDFAQRSADWMGAQQ
DQLAIARNEDSFIVPRPEEPSSSDAFLAIGTGLTGLFASIGIWTHFGPYM
RVAGQRKPSKWMTLWEVFKALLAVFVIGVEVATLAFSWVTQNEAEGWSSF
FTWFDASVALSPSVRDCESSEQFVCSAARSVYVVAGLMGTATAFHPNRTR
WKALLTSMVLIIAASLVFVCSFFVKSYRSWTQNGLYGSYWWTGEAYPTTL
LVKLNKRDRRRIHKSHGLLRVRLDTVLTNHSTVPRSWSDSGRSR*

spliced messenger RNA

>Gcaud1874.t1 ID=Gcaud1874.t1|Name=Gcaud1874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGTCCAATAGCCCAGGACTGGTTGGAAGAACGCATTACGAGTT
TGCGGACGCATCTAGAAAGATTCAGGGCCATTCAACCCAGGTGTTTTTGG
CTTGTCGGTGTTTGGATTATGGTTGCAGGGAGGCTATGGTGCTTGAACCG
AGACAGGTTAAATCAGAAGACGGAAAACAATCAGAATTGGTATGTACATA
TCCTAGGGTAGGAGGGAAATGGAGGGATTGTCATACTGAGCTGCTTCGTC
TACAGGAAATCAATGTGGACGACGTTCATTCAATTCCGGATTCCACAGAT
TTTTCTGTAGAGCTTGGTCCAAACAATTTCTGGAGGGCCATCGGTAGACG
GAGGTACATACGGGACATATCAAGGAGCGAACTTGACAGGCTAGAGGAGG
TTATCTTTGAAGACATCCTTGAGGACTTTAAGAAGAAGGTTAACGCTTCA
TCAACCGGTGAGTTCTATGTGTTTGGGAATGATACAGCAGGTGACTATCA
ATTTCCGGATAAATCAGCTGTCGAGGTCGGCGATAGCGAGGATTGTGCAA
AGCTTTTCGATTTCGCTCAAAGAAGCGCAGACTGGATGGGTGCACAACAA
GATCAGTTAGCAATCGCCAGAAACGAAGATTCTTTTATTGTACCACGGCC
TGAAGAACCGTCATCATCAGATGCGTTTCTTGCGATTGGAACAGGGTTGA
CCGGTTTGTTTGCGTCAATTGGGATATGGACACATTTCGGACCCTATATG
CGCGTTGCCGGGCAAAGAAAACCATCGAAATGGATGACGCTTTGGGAGGT
GTTCAAAGCGTTGTTGGCGGTTTTCGTAATCGGTGTTGAAGTAGCAACAC
TGGCGTTCTCGTGGGTGACCCAAAACGAGGCAGAAGGCTGGAGCTCCTTC
TTCACATGGTTTGATGCATCAGTGGCTCTGTCCCCATCGGTAAGGGATTG
CGAGTCCAGCGAGCAATTCGTCTGTTCTGCAGCTCGAAGTGTGTACGTGG
TCGCGGGACTGATGGGAACCGCAACAGCCTTCCATCCGAACCGAACAAGA
TGGAAAGCGTTGTTGACTTCAATGGTGCTCATCATTGCTGCGAGTCTTGT
GTTTGTTTGCTCGTTTTTCGTGAAGTCGTACCGGTCGTGGACGCAGAATG
GACTATACGGGTCCTATTGGTGGACGGGCGAAGCTTATCCGACGACGCTG
CTTGTAAAGCTCAACAAACGAGACCGGCGACGCATTCACAAATCGCACGG
GTTACTGCGAGTGAGGCTGGATACTGTGCTCACGAACCACAGTACCGTAC
CACGGAGCTGGTCGGATTCAGGTAGATCTCGTTGA

protein sequence of Gcaud1874.t1

>Gcaud1874.t1 ID=Gcaud1874.t1|Name=Gcaud1874.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MLASNSPGLVGRTHYEFADASRKIQGHSTQVFLACRCLDYGCREAMVLEP
RQVKSEDGKQSELVCTYPRVGGKWRDCHTELLRLQEINVDDVHSIPDSTD
FSVELGPNNFWRAIGRRRYIRDISRSELDRLEEVIFEDILEDFKKKVNAS
STGEFYVFGNDTAGDYQFPDKSAVEVGDSEDCAKLFDFAQRSADWMGAQQ
DQLAIARNEDSFIVPRPEEPSSSDAFLAIGTGLTGLFASIGIWTHFGPYM
RVAGQRKPSKWMTLWEVFKALLAVFVIGVEVATLAFSWVTQNEAEGWSSF
FTWFDASVALSPSVRDCESSEQFVCSAARSVYVVAGLMGTATAFHPNRTR
WKALLTSMVLIIAASLVFVCSFFVKSYRSWTQNGLYGSYWWTGEAYPTTL
LVKLNKRDRRRIHKSHGLLRVRLDTVLTNHSTVPRSWSDSGRSR*

mRNA from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1874.t1 ID=Gcaud1874.t1|Name=Gcaud1874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+ (Gracilaria caudata M_176_S67 male)
ATGCTTGCGTCCAATAGCCCAGGACTGGTTGGAAGAACGCATTACGAGTT
TGCGGACGCATCTAGAAAGATTCAGGGCCATTCAACCCAGGTGTTTTTGG
CTTGTCGGTGTTTGGATTATGGTTGCAGGGAGGCTATGGTGCTTGAACCG
AGACAGGTTAAATCAGAAGACGGAAAACAATCAGAATTGGTATGTACATA
TCCTAGGGTAGGAGGGAAATGGAGGGATTGTCATACTGAGCTGCTTCGTC
TACAGGAAATCAATGTGGACGACGTTCATTCAATTCCGGATTCCACAGAT
TTTTCTGTAGAGCTTGGTCCAAACAATTTCTGGAGGGCCATCGGTAGACG
GAGGTACATACGGGACATATCAAGGAGCGAACTTGACAGGCTAGAGGAGG
TTATCTTTGAAGACATCCTTGAGGACTTTAAGAAGAAGGTTAACGCTTCA
TCAACCGGTGAGTTCTATGTGTTTGGGAATGATACAGCAGGTGACTATCA
ATTTCCGGATAAATCAGCTGTCGAGGTCGGCGATAGCGAGGATTGTGCAA
AGCTTTTCGATTTCGCTCAAAGAAGCGCAGACTGGATGGGTGCACAACAA
GATCAGTTAGCAATCGCCAGAAACGAAGATTCTTTTATTGTACCACGGCC
TGAAGAACCGTCATCATCAGATGCGTTTCTTGCGATTGGAACAGGGTTGA
CCGGTTTGTTTGCGTCAATTGGGATATGGACACATTTCGGACCCTATATG
CGCGTTGCCGGGCAAAGAAAACCATCGAAATGGATGACGCTTTGGGAGGT
GTTCAAAGCGTTGTTGGCGGTTTTCGTAATCGGTGTTGAAGTAGCAACAC
TGGCGTTCTCGTGGGTGACCCAAAACGAGGCAGAAGGCTGGAGCTCCTTC
TTCACATGGTTTGATGCATCAGTGGCTCTGTCCCCATCGGTAAGGGATTG
CGAGTCCAGCGAGCAATTCGTCTGTTCTGCAGCTCGAAGTGTGTACGTGG
TCGCGGGACTGATGGGAACCGCAACAGCCTTCCATCCGAACCGAACAAGA
TGGAAAGCGTTGTTGACTTCAATGGTGCTCATCATTGCTGCGAGTCTTGT
GTTTGTTTGCTCGTTTTTCGTGAAGTCGTACCGGTCGTGGACGCAGAATG
GACTATACGGGTCCTATTGGTGGACGGGCGAAGCTTATCCGACGACGCTG
CTTGTAAAGCTCAACAAACGAGACCGGCGACGCATTCACAAATCGCACGG
GTTACTGCGAGTGAGGCTGGATACTGTGCTCACGAACCACAGTACCGTAC
CACGGAGCTGGTCGGATTCAGGTAGATCTCGTTGA

Coding sequence (CDS) from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+

>Gcaud1874.t1 ID=Gcaud1874.t1|Name=Gcaud1874.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1335bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:9386..10720+ (Gracilaria caudata M_176_S67 male)
ATGCTTGCGTCCAATAGCCCAGGACTGGTTGGAAGAACGCATTACGAGTT
TGCGGACGCATCTAGAAAGATTCAGGGCCATTCAACCCAGGTGTTTTTGG
CTTGTCGGTGTTTGGATTATGGTTGCAGGGAGGCTATGGTGCTTGAACCG
AGACAGGTTAAATCAGAAGACGGAAAACAATCAGAATTGGTATGTACATA
TCCTAGGGTAGGAGGGAAATGGAGGGATTGTCATACTGAGCTGCTTCGTC
TACAGGAAATCAATGTGGACGACGTTCATTCAATTCCGGATTCCACAGAT
TTTTCTGTAGAGCTTGGTCCAAACAATTTCTGGAGGGCCATCGGTAGACG
GAGGTACATACGGGACATATCAAGGAGCGAACTTGACAGGCTAGAGGAGG
TTATCTTTGAAGACATCCTTGAGGACTTTAAGAAGAAGGTTAACGCTTCA
TCAACCGGTGAGTTCTATGTGTTTGGGAATGATACAGCAGGTGACTATCA
ATTTCCGGATAAATCAGCTGTCGAGGTCGGCGATAGCGAGGATTGTGCAA
AGCTTTTCGATTTCGCTCAAAGAAGCGCAGACTGGATGGGTGCACAACAA
GATCAGTTAGCAATCGCCAGAAACGAAGATTCTTTTATTGTACCACGGCC
TGAAGAACCGTCATCATCAGATGCGTTTCTTGCGATTGGAACAGGGTTGA
CCGGTTTGTTTGCGTCAATTGGGATATGGACACATTTCGGACCCTATATG
CGCGTTGCCGGGCAAAGAAAACCATCGAAATGGATGACGCTTTGGGAGGT
GTTCAAAGCGTTGTTGGCGGTTTTCGTAATCGGTGTTGAAGTAGCAACAC
TGGCGTTCTCGTGGGTGACCCAAAACGAGGCAGAAGGCTGGAGCTCCTTC
TTCACATGGTTTGATGCATCAGTGGCTCTGTCCCCATCGGTAAGGGATTG
CGAGTCCAGCGAGCAATTCGTCTGTTCTGCAGCTCGAAGTGTGTACGTGG
TCGCGGGACTGATGGGAACCGCAACAGCCTTCCATCCGAACCGAACAAGA
TGGAAAGCGTTGTTGACTTCAATGGTGCTCATCATTGCTGCGAGTCTTGT
GTTTGTTTGCTCGTTTTTCGTGAAGTCGTACCGGTCGTGGACGCAGAATG
GACTATACGGGTCCTATTGGTGGACGGGCGAAGCTTATCCGACGACGCTG
CTTGTAAAGCTCAACAAACGAGACCGGCGACGCATTCACAAATCGCACGG
GTTACTGCGAGTGAGGCTGGATACTGTGCTCACGAACCACAGTACCGTAC
CACGGAGCTGGTCGGATTCAGGTAGATCTCGTTGA