Gcaud1953.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1953.t1
Unique NameGcaud1953.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_821_length_17530_cov_5.307414contigNODE_821_length_17530_cov_5.307414:16980..17295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1953Gcaud1953Gracilaria caudata M_176_S67 malegeneNODE_821_length_17530_cov_5.307414 16980..17295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1953.t1Gcaud1953.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_821_length_17530_cov_5.307414 16980..17295 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1953.t1.start1Gcaud1953.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_821_length_17530_cov_5.307414 16980..16982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1953.t1.CDS1Gcaud1953.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_821_length_17530_cov_5.307414 16980..17082 +
Gcaud1953.t1.CDS2Gcaud1953.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_821_length_17530_cov_5.307414 17168..17295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1953.t1.exon1Gcaud1953.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_821_length_17530_cov_5.307414 16980..17082 +
Gcaud1953.t1.exon2Gcaud1953.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_821_length_17530_cov_5.307414 17168..17295 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1953.t1.intron1Gcaud1953.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_821_length_17530_cov_5.307414 17083..17167 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1953.t1.stop1Gcaud1953.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_821_length_17530_cov_5.307414 17293..17295 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1953.t1 ID=Gcaud1953.t1|Name=Gcaud1953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=77bp
MKWPLGIGEKRGVSNSACILHESRFVLSYKLYNQRRSALGTGLKGSMGNI
CTRLLDQACLMENCIARPEVSRRYRC*
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spliced messenger RNA

>Gcaud1953.t1 ID=Gcaud1953.t1|Name=Gcaud1953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:16980..17295+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATGGCCGCTTGGCATTGGAGAGAAAAGAGGCGTGAGTAACTCGGC
GTGTATACTTCACGAAAGTCGCTTTGTCCTGTCGTACAAGCTGTACAACC
AAAGGCGGTCCGCATTAGGAACGGGACTTAAGGGGAGCATGGGAAATATT
TGCACACGACTCTTGGATCAAGCTTGTCTCATGGAAAACTGCATCGCACG
ACCTGAAGTTTCTCGCAGATACAGATGCTGA
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protein sequence of Gcaud1953.t1

>Gcaud1953.t1 ID=Gcaud1953.t1|Name=Gcaud1953.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=77bp
MKWPLGIGEKRGVSNSACILHESRFVLSYKLYNQRRSALGTGLKGSMGNI
CTRLLDQACLMENCIARPEVSRRYRC*
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mRNA from alignment at NODE_821_length_17530_cov_5.307414:16980..17295+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1953.t1 ID=Gcaud1953.t1|Name=Gcaud1953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=316bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:16980..17295+ (Gracilaria caudata M_176_S67 male)
ATGAAATGGCCGCTTGGCATTGGAGAGAAAAGAGGCGTGAGTAACTCGGC
GTGTATACTTCACGAAAGTCGCTTTGTCCTGTCGTACAAGCTGTACAACC
AAAGTATGAGCGCCAACTCTTAACCATGTTTGTTCCGTGGAATTTTCGAT
CTTTAGATAACTAACTGGCTAGCATGTTTTCTACAAAGGGCGGTCCGCAT
TAGGAACGGGACTTAAGGGGAGCATGGGAAATATTTGCACACGACTCTTG
GATCAAGCTTGTCTCATGGAAAACTGCATCGCACGACCTGAAGTTTCTCG
CAGATACAGATGCTGA
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Coding sequence (CDS) from alignment at NODE_821_length_17530_cov_5.307414:16980..17295+

>Gcaud1953.t1 ID=Gcaud1953.t1|Name=Gcaud1953.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=231bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:16980..17295+ (Gracilaria caudata M_176_S67 male)
ATGAAATGGCCGCTTGGCATTGGAGAGAAAAGAGGCGTGAGTAACTCGGC
GTGTATACTTCACGAAAGTCGCTTTGTCCTGTCGTACAAGCTGTACAACC
AAAGGCGGTCCGCATTAGGAACGGGACTTAAGGGGAGCATGGGAAATATT
TGCACACGACTCTTGGATCAAGCTTGTCTCATGGAAAACTGCATCGCACG
ACCTGAAGTTTCTCGCAGATACAGATGCTGA
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