Gcaud1948.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1948.t1
Unique NameGcaud1948.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_821_length_17530_cov_5.307414contigNODE_821_length_17530_cov_5.307414:3443..4142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010453215.1
Max annot lvl35493|Streptophyta
Evalue2.24e-23
EggNOG OGsKOG3294@1|root,KOG3294@2759|Eukaryota,37JVV@33090|Viridiplantae,3G98D@35493|Streptophyta,3HZ71@3699|Brassicales
Descriptionfemale pronucleus assembly
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1948Gcaud1948Gracilaria caudata M_176_S67 malegeneNODE_821_length_17530_cov_5.307414 3443..4142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1948.t1Gcaud1948.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_821_length_17530_cov_5.307414 3443..4142 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1948.t1.stop1Gcaud1948.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_821_length_17530_cov_5.307414 3443..3445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1948.t1.CDS1Gcaud1948.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_821_length_17530_cov_5.307414 3443..3917 -
Gcaud1948.t1.CDS2Gcaud1948.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_821_length_17530_cov_5.307414 3982..4142 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1948.t1.exon1Gcaud1948.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_821_length_17530_cov_5.307414 3443..3917 -
Gcaud1948.t1.exon2Gcaud1948.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_821_length_17530_cov_5.307414 3982..4142 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1948.t1.intron1Gcaud1948.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_821_length_17530_cov_5.307414 3918..3981 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1948.t1.start1Gcaud1948.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_821_length_17530_cov_5.307414 4140..4142 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1948.t1 ID=Gcaud1948.t1|Name=Gcaud1948.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=212bp
MAVNIPLTGGIQRYPLPFPGEVFLLTRDKTEVTVKHAGHAAKNLKGRLYM
TNMRMVFMVAPEEAQKARFETFEAPFRGIINEAFNQPIFGCNNLTAGVLY
YEGQPFMGDLTMRINFVRGGVNTFMPVFNNVLLAVRQQMARESQANQYSP
PVYPSTTTPQVEEYFPSHNSAFIDPHDPSTIYTTQPVGEETRRQDVPSWH
VSAQGLRSRRH*
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spliced messenger RNA

>Gcaud1948.t1 ID=Gcaud1948.t1|Name=Gcaud1948.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=636bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:3443..4142- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTTAACATTCCCTTAACCGGGGGCATACAACGCTATCCCCTTCC
TTTCCCTGGAGAAGTGTTTCTTCTGACCAGGGATAAGACTGAAGTTACAG
TGAAACATGCTGGCCACGCCGCGAAGAATCTCAAGGGTCGACTCTACATG
ACCAACATGCGTATGGTGTTCATGGTGGCTCCCGAGGAAGCACAAAAAGC
GCGATTTGAAACGTTTGAGGCCCCATTCCGCGGCATTATCAACGAAGCTT
TTAACCAGCCTATTTTCGGATGTAACAACCTTACTGCAGGCGTTCTCTAC
TACGAGGGACAGCCATTTATGGGCGACCTCACGATGCGAATTAACTTTGT
ACGCGGAGGCGTGAATACGTTCATGCCGGTGTTCAACAATGTCCTCCTGG
CTGTACGACAACAGATGGCGAGGGAATCCCAAGCAAATCAATACAGCCCG
CCTGTTTATCCGTCAACCACCACACCGCAGGTTGAAGAGTACTTCCCAAG
TCACAATTCGGCTTTCATAGACCCGCATGATCCTTCCACGATATATACGA
CGCAGCCGGTGGGTGAAGAAACTCGAAGACAGGATGTTCCCTCCTGGCAT
GTGAGTGCTCAGGGTTTACGCTCTCGTCGTCATTAA
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protein sequence of Gcaud1948.t1

>Gcaud1948.t1 ID=Gcaud1948.t1|Name=Gcaud1948.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=212bp
MAVNIPLTGGIQRYPLPFPGEVFLLTRDKTEVTVKHAGHAAKNLKGRLYM
TNMRMVFMVAPEEAQKARFETFEAPFRGIINEAFNQPIFGCNNLTAGVLY
YEGQPFMGDLTMRINFVRGGVNTFMPVFNNVLLAVRQQMARESQANQYSP
PVYPSTTTPQVEEYFPSHNSAFIDPHDPSTIYTTQPVGEETRRQDVPSWH
VSAQGLRSRRH*
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mRNA from alignment at NODE_821_length_17530_cov_5.307414:3443..4142-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1948.t1 ID=Gcaud1948.t1|Name=Gcaud1948.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=700bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:3443..4142- (Gracilaria caudata M_176_S67 male)
ATGGCAGTTAACATTCCCTTAACCGGGGGCATACAACGCTATCCCCTTCC
TTTCCCTGGAGAAGTGTTTCTTCTGACCAGGGATAAGACTGAAGTTACAG
TGAAACATGCTGGCCACGCCGCGAAGAATCTCAAGGGTCGACTCTACATG
ACCAACATGCGGTACGATCTCCGCCATCCTCTTCGTCTTGCTCTATCTGT
AAAAAGGACTCTAACAAGCTCATAGTATGGTGTTCATGGTGGCTCCCGAG
GAAGCACAAAAAGCGCGATTTGAAACGTTTGAGGCCCCATTCCGCGGCAT
TATCAACGAAGCTTTTAACCAGCCTATTTTCGGATGTAACAACCTTACTG
CAGGCGTTCTCTACTACGAGGGACAGCCATTTATGGGCGACCTCACGATG
CGAATTAACTTTGTACGCGGAGGCGTGAATACGTTCATGCCGGTGTTCAA
CAATGTCCTCCTGGCTGTACGACAACAGATGGCGAGGGAATCCCAAGCAA
ATCAATACAGCCCGCCTGTTTATCCGTCAACCACCACACCGCAGGTTGAA
GAGTACTTCCCAAGTCACAATTCGGCTTTCATAGACCCGCATGATCCTTC
CACGATATATACGACGCAGCCGGTGGGTGAAGAAACTCGAAGACAGGATG
TTCCCTCCTGGCATGTGAGTGCTCAGGGTTTACGCTCTCGTCGTCATTAA
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Coding sequence (CDS) from alignment at NODE_821_length_17530_cov_5.307414:3443..4142-

>Gcaud1948.t1 ID=Gcaud1948.t1|Name=Gcaud1948.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=636bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:3443..4142- (Gracilaria caudata M_176_S67 male)
ATGGCAGTTAACATTCCCTTAACCGGGGGCATACAACGCTATCCCCTTCC
TTTCCCTGGAGAAGTGTTTCTTCTGACCAGGGATAAGACTGAAGTTACAG
TGAAACATGCTGGCCACGCCGCGAAGAATCTCAAGGGTCGACTCTACATG
ACCAACATGCGTATGGTGTTCATGGTGGCTCCCGAGGAAGCACAAAAAGC
GCGATTTGAAACGTTTGAGGCCCCATTCCGCGGCATTATCAACGAAGCTT
TTAACCAGCCTATTTTCGGATGTAACAACCTTACTGCAGGCGTTCTCTAC
TACGAGGGACAGCCATTTATGGGCGACCTCACGATGCGAATTAACTTTGT
ACGCGGAGGCGTGAATACGTTCATGCCGGTGTTCAACAATGTCCTCCTGG
CTGTACGACAACAGATGGCGAGGGAATCCCAAGCAAATCAATACAGCCCG
CCTGTTTATCCGTCAACCACCACACCGCAGGTTGAAGAGTACTTCCCAAG
TCACAATTCGGCTTTCATAGACCCGCATGATCCTTCCACGATATATACGA
CGCAGCCGGTGGGTGAAGAAACTCGAAGACAGGATGTTCCCTCCTGGCAT
GTGAGTGCTCAGGGTTTACGCTCTCGTCGTCATTAA
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