Gcaud1950.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1950.t1
Unique Name	Gcaud1950.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_821_length_17530_cov_5.307414	contig	NODE_821_length_17530_cov_5.307414:5817..7602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	32264.tetur01g16240.1
Preferred name	SYF2
PFAMs	SYF2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12868
KEGG Pathway	ko03040,map03040
KEGG Module	M00355
GOs	GO:0000075,GO:0000077,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007275,GO:0007346,GO:0007369,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0010948,GO:0010972,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022402,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0042127,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0071004,GO:0071006,GO:0071007,GO:0071008,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990904
Evalue	1.64e-11
EggNOG OGs	KOG2609@1\|root,KOG2609@2759\|Eukaryota,38DBI@33154\|Opisthokonta,3BASU@33208\|Metazoa,3CU9P@33213\|Bilateria,41U9D@6656\|Arthropoda
Description	pre-mRNA-splicing factor
COG category	AD
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1950	Gcaud1950	Gracilaria caudata M_176_S67 male	gene	NODE_821_length_17530_cov_5.307414 5817..7602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1950.t1	Gcaud1950.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_821_length_17530_cov_5.307414 5817..7602 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1950.t1.start1	Gcaud1950.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_821_length_17530_cov_5.307414 5817..5819 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1950.t1.CDS1	Gcaud1950.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 5817..6409 +
Gcaud1950.t1.CDS2	Gcaud1950.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 6520..6605 +
Gcaud1950.t1.CDS3	Gcaud1950.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 6740..6790 +
Gcaud1950.t1.CDS4	Gcaud1950.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 7259..7275 +
Gcaud1950.t1.CDS5	Gcaud1950.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 7369..7602 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1950.t1.exon1	Gcaud1950.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 5817..6409 +
Gcaud1950.t1.exon2	Gcaud1950.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 6520..6605 +
Gcaud1950.t1.exon3	Gcaud1950.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 6740..6790 +
Gcaud1950.t1.exon4	Gcaud1950.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 7259..7275 +
Gcaud1950.t1.exon5	Gcaud1950.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 7369..7602 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1950.t1.intron1	Gcaud1950.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_821_length_17530_cov_5.307414 6410..6519 +
Gcaud1950.t1.intron2	Gcaud1950.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_821_length_17530_cov_5.307414 6606..6739 +
Gcaud1950.t1.intron3	Gcaud1950.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_821_length_17530_cov_5.307414 6791..7258 +
Gcaud1950.t1.intron4	Gcaud1950.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_821_length_17530_cov_5.307414 7276..7368 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1950.t1.stop1	Gcaud1950.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_821_length_17530_cov_5.307414 7600..7602 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+
coding sequence from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+

mRNA sequence

>Gcaud1950.t1 ID=Gcaud1950.t1|Name=Gcaud1950.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=327bp
MASTAERLKELKKKLLEAREENLKAADYEERQREEDTDVAVNRDSFQGPP
KNRKGVRKESFNRRNNANERDSGLGSADEAEGENNDERLRSMKRRARAME
KTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRR
RTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTAQYRE
WLPDRVVIINTELSIPDMRIQLWKVTLVKDKNSFQRIELEARMPTTPNTG
TTLGSIFLGELHLECYSFLRDEHLTAHVTRTTAGNQSNKKATRSQNASYK
SFLQKHLGALSLFTLLMGVLVMKVLR*

spliced messenger RNA

>Gcaud1950.t1 ID=Gcaud1950.t1|Name=Gcaud1950.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTACGGCAGAACGATTGAAGGAGCTCAAGAAGAAGCTTTTGGA
AGCAAGGGAGGAAAACCTTAAGGCTGCGGATTATGAGGAGAGACAACGAG
AGGAGGACACAGATGTTGCTGTTAACCGAGACTCTTTTCAAGGACCACCA
AAGAACAGAAAAGGGGTGCGTAAGGAAAGCTTTAACAGACGTAACAATGC
GAACGAGCGAGATTCTGGTTTGGGGTCCGCAGACGAAGCTGAGGGAGAGA
ACAATGACGAAAGGCTGAGGAGTATGAAACGTCGTGCAAGAGCAATGGAA
AAGACGCTACACGAAAGCACGTCGCAAGTGCAGAGTGAAGACAATGGAGT
GATTACATACGGTGCTGTTACTGATACAAAGGAAGGTATCGATCGCATGG
TGAATGAAATAGAAGGCGTAGACCGTCGTAGGGCTAAATATCGACGAAGA
CGCACTTTTGATGAGGACAGAGCAGACATCTCGTTCATCAATGAAGGGAA
CCGCATCTTCAATCGAACTCTGGACAAGCATTTTGATAAGTTCGAATCTG
TACAAAAGATTAAGGATAGTTTGGAGCGCGGAACGGCGCAGTACCGCGAA
TGGCTTCCAGACAGAGTAGTGATAATTAACACGGAACTGTCCATACCAGA
TATGAGAATCCAGCTTTGGAAGGTAACTTTGGTGAAGGATAAGAACAGTT
TCCAAAGAATCGAACTGGAAGCTAGAATGCCGACTACCCCGAATACGGGA
ACTACGCTTGGCTCCATTTTCTTGGGAGAACTGCATCTTGAATGCTACAG
CTTCTTGCGCGACGAGCACCTAACTGCACATGTCACAAGAACCACCGCAG
GAAATCAATCGAACAAGAAAGCTACGCGCTCCCAGAATGCATCATATAAG
TCTTTTCTTCAAAAACACCTCGGGGCCCTGTCACTGTTCACTCTGCTGAT
GGGTGTCTTGGTTATGAAAGTGCTACGATGA

protein sequence of Gcaud1950.t1

>Gcaud1950.t1 ID=Gcaud1950.t1|Name=Gcaud1950.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MASTAERLKELKKKLLEAREENLKAADYEERQREEDTDVAVNRDSFQGPP
KNRKGVRKESFNRRNNANERDSGLGSADEAEGENNDERLRSMKRRARAME
KTLHESTSQVQSEDNGVITYGAVTDTKEGIDRMVNEIEGVDRRRAKYRRR
RTFDEDRADISFINEGNRIFNRTLDKHFDKFESVQKIKDSLERGTAQYRE
WLPDRVVIINTELSIPDMRIQLWKVTLVKDKNSFQRIELEARMPTTPNTG
TTLGSIFLGELHLECYSFLRDEHLTAHVTRTTAGNQSNKKATRSQNASYK
SFLQKHLGALSLFTLLMGVLVMKVLR*

mRNA from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1950.t1 ID=Gcaud1950.t1|Name=Gcaud1950.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1786bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+ (Gracilaria caudata M_176_S67 male)
ATGGCGTCTACGGCAGAACGATTGAAGGAGCTCAAGAAGAAGCTTTTGGA
AGCAAGGGAGGAAAACCTTAAGGCTGCGGATTATGAGGAGAGACAACGAG
AGGAGGACACAGATGTTGCTGTTAACCGAGACTCTTTTCAAGGACCACCA
AAGAACAGAAAAGGGGTGCGTAAGGAAAGCTTTAACAGACGTAACAATGC
GAACGAGCGAGATTCTGGTTTGGGGTCCGCAGACGAAGCTGAGGGAGAGA
ACAATGACGAAAGGCTGAGGAGTATGAAACGTCGTGCAAGAGCAATGGAA
AAGACGCTACACGAAAGCACGTCGCAAGTGCAGAGTGAAGACAATGGAGT
GATTACATACGGTGCTGTTACTGATACAAAGGAAGGTATCGATCGCATGG
TGAATGAAATAGAAGGCGTAGACCGTCGTAGGGCTAAATATCGACGAAGA
CGCACTTTTGATGAGGACAGAGCAGACATCTCGTTCATCAATGAAGGGAA
CCGCATCTTCAATCGAACTCTGGACAAGCATTTTGATAAGTTCGAATCTG
TACAAAAGATTAAGGATAGTTTGGAGCGCGGAACGGCGCAGTAGTTTTCG
ACCCTACTTGACGAAATTGGATAGCCTTTTATGATTGAATTACTTCGTTT
ACGAAGAATACTGTGACTATGAAAGCGAATAACACGTACACTGCTCGGAA
CAGCCGCGAATGGCTTCCAGACAGAGTAGTGATAATTAACACGGAACTGT
CCATACCAGATATGAGAATCCAGCTTTGGAAGGTAACTTGTATGTCATAT
TGTTGGATTCATAAGCCCGAAACTTTCATCGAGGCTTTCTCTATAGAAAC
TGCTATAGCTCACGATACTCAATACCGACCATCATCTGACATATATGCTG
ACATTTAGAGAACGTTCAAAAAGTGGTGAAGGATAAGAACAGTTTCCAAA
GAATCGAACTGGAAGCTAGAATGCGTCACTGAGGCGTGCTCTGATTGACG
CTGTTGCCGTTTTAAAGCGCGACGAAAGGAAACGATGCCCAAAGCGCATC
ATTAGAGATATACCAATTTCATTATTCAAGAGCGAAACGAAAAGCCAGGC
TCTGATGGCTTCAGCTGTCGAAGAAAAGTCTGGCGTCGTGACGCCGGGAA
AGCCTCACCCTGAAGACAAAGCACGCTCACCTCCCGAATTTCACTTTACC
TGTTCTTCACATACATATTGAAATGGAGCTCAGAGTATTTTCAACGAGTC
TCCGAGAGAAGAGAAACGTCGTAGTGCCCCTTAACTTCCGTTGTATCGGT
ACTACCCAACAGCGTTTCGTAATGAATGTTACGCAGGGATATATGATGCA
CGTCATATCTGGATTCGAACAAAGTAGTTGGTGTGTACTGCGAAGAGAGT
GTCCGAGAGGGTCTTTTGCCCATGACTTGTCTTTCCACACAGCGACTACC
CCGAATACGGTATGTGCTCTTCTTCGACACTTCCAGATCAGAAACTCAGT
AACCAACGGACCACCACCCATTCGCGATACATGTGATTGAAAATCGTATT
AGGGAACTACGCTTGGCTCCATTTTCTTGGGAGAACTGCATCTTGAATGC
TACAGCTTCTTGCGCGACGAGCACCTAACTGCACATGTCACAAGAACCAC
CGCAGGAAATCAATCGAACAAGAAAGCTACGCGCTCCCAGAATGCATCAT
ATAAGTCTTTTCTTCAAAAACACCTCGGGGCCCTGTCACTGTTCACTCTG
CTGATGGGTGTCTTGGTTATGAAAGTGCTACGATGA

Coding sequence (CDS) from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+

>Gcaud1950.t1 ID=Gcaud1950.t1|Name=Gcaud1950.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=981bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:5817..7602+ (Gracilaria caudata M_176_S67 male)
ATGGCGTCTACGGCAGAACGATTGAAGGAGCTCAAGAAGAAGCTTTTGGA
AGCAAGGGAGGAAAACCTTAAGGCTGCGGATTATGAGGAGAGACAACGAG
AGGAGGACACAGATGTTGCTGTTAACCGAGACTCTTTTCAAGGACCACCA
AAGAACAGAAAAGGGGTGCGTAAGGAAAGCTTTAACAGACGTAACAATGC
GAACGAGCGAGATTCTGGTTTGGGGTCCGCAGACGAAGCTGAGGGAGAGA
ACAATGACGAAAGGCTGAGGAGTATGAAACGTCGTGCAAGAGCAATGGAA
AAGACGCTACACGAAAGCACGTCGCAAGTGCAGAGTGAAGACAATGGAGT
GATTACATACGGTGCTGTTACTGATACAAAGGAAGGTATCGATCGCATGG
TGAATGAAATAGAAGGCGTAGACCGTCGTAGGGCTAAATATCGACGAAGA
CGCACTTTTGATGAGGACAGAGCAGACATCTCGTTCATCAATGAAGGGAA
CCGCATCTTCAATCGAACTCTGGACAAGCATTTTGATAAGTTCGAATCTG
TACAAAAGATTAAGGATAGTTTGGAGCGCGGAACGGCGCAGTACCGCGAA
TGGCTTCCAGACAGAGTAGTGATAATTAACACGGAACTGTCCATACCAGA
TATGAGAATCCAGCTTTGGAAGGTAACTTTGGTGAAGGATAAGAACAGTT
TCCAAAGAATCGAACTGGAAGCTAGAATGCCGACTACCCCGAATACGGGA
ACTACGCTTGGCTCCATTTTCTTGGGAGAACTGCATCTTGAATGCTACAG
CTTCTTGCGCGACGAGCACCTAACTGCACATGTCACAAGAACCACCGCAG
GAAATCAATCGAACAAGAAAGCTACGCGCTCCCAGAATGCATCATATAAG
TCTTTTCTTCAAAAACACCTCGGGGCCCTGTCACTGTTCACTCTGCTGAT
GGGTGTCTTGGTTATGAAAGTGCTACGATGA