Gcaud1952.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1952.t2
Unique Name	Gcaud1952.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_821_length_17530_cov_5.307414	contig	NODE_821_length_17530_cov_5.307414:15199..16716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_92746
PFAMs	H_PPase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01507
KEGG Pathway	ko00190,map00190
Evalue	1.75e-07
EggNOG OGs	COG3808@1\|root,2QPJC@2759\|Eukaryota
EC	3.6.1.1
Description	hydrogen-translocating pyrophosphatase activity
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1952	Gcaud1952	Gracilaria caudata M_176_S67 male	gene	NODE_821_length_17530_cov_5.307414 13063..16716 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1952.t2.start1	Gcaud1952.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_821_length_17530_cov_5.307414 15199..15201 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1952.t2.CDS1	Gcaud1952.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_821_length_17530_cov_5.307414 15199..16716 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1952.t2.exon1	Gcaud1952.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_821_length_17530_cov_5.307414 15199..16716 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1952.t2.stop1	Gcaud1952.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_821_length_17530_cov_5.307414 16714..16716 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1952.t2	Gcaud1952.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_821_length_17530_cov_5.307414 15199..16716 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+
coding sequence from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+

mRNA sequence

>Gcaud1952.t2 ID=Gcaud1952.t2|Name=Gcaud1952.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=506bp
MIADNYRPMTASGRNLGPASATSWKLFLCCLIGFFAAITVSWFCGLFFSS
DSYKPAVVVQKAAQSGTNALFVQCLGNGILCSVGGGALIIASILSSFALY
DAFGVGVMTIAYMSMGGVACTAVALGSVGRSAHGISCVTSQTRAARNGGI
VKGMSTQIAAAGASFSQGASALTGFTLVLATLQQAGLQLSPRDLVGGPEQ
PPAKLISGTGFIPMDVLVVCGLVIGGVIPLIIAGTLWAVARQHSVLKLRQ
MGTDSVRQIGLLSLLESILPVGIALLSPFVVGFGLGYRALIGMATSSVFT
SFVVGSLSWTFGTCMQKGCAKLGMRQIRSARRAKSLAWTLLEVVEPAMRS
VSKMFAALSLVFVLLMPPDTSRGWIGGILFAAVVLGVWAYTMWRHCGRKR
DTSQRQIPLHASRPVSPFFVESPTFNPFNVVPGSQMSEALLAFGGQPKLP
VSPQVLPGLSRRSRAEFTSVTLEPLSSPRVGNPTKISSTVLRDETGRTPR
GDWMV*

spliced messenger RNA

>Gcaud1952.t2 ID=Gcaud1952.t2|Name=Gcaud1952.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGCGGACAACTATCGGCCAATGACTGCTTCAGGGCGAAATCTAGG
GCCTGCGTCTGCAACATCCTGGAAGCTGTTCCTTTGTTGCCTCATTGGAT
TTTTCGCTGCTATCACCGTAAGTTGGTTCTGCGGATTATTCTTCTCATCG
GATTCATACAAGCCGGCCGTTGTTGTGCAGAAGGCGGCACAGTCCGGAAC
GAATGCGCTTTTTGTTCAGTGTCTTGGAAATGGAATCCTCTGCAGTGTAG
GTGGGGGTGCTCTCATCATTGCATCTATTCTGTCCTCGTTTGCTCTTTAT
GATGCTTTTGGAGTCGGAGTTATGACAATTGCCTACATGAGTATGGGTGG
GGTTGCTTGTACAGCCGTCGCATTGGGTTCCGTTGGACGTAGTGCCCATG
GTATTTCTTGTGTCACATCTCAAACTCGTGCGGCGAGAAATGGTGGTATT
GTCAAAGGAATGAGTACTCAAATCGCTGCTGCTGGCGCGAGCTTTTCGCA
AGGCGCATCAGCACTGACTGGTTTCACACTTGTTCTAGCCACACTGCAGC
AAGCAGGTCTTCAGCTTTCACCGAGAGACCTTGTGGGAGGACCAGAACAG
CCCCCAGCGAAACTCATCTCTGGCACTGGCTTCATACCAATGGACGTTCT
TGTGGTCTGTGGGCTCGTAATAGGGGGCGTTATTCCCTTGATTATTGCCG
GTACTTTGTGGGCAGTCGCTAGACAACACTCAGTGTTGAAACTGAGACAA
ATGGGAACAGATTCAGTTCGTCAAATAGGACTGTTATCGTTACTAGAAAG
CATCTTGCCAGTCGGGATTGCTCTTCTTTCTCCCTTCGTGGTTGGGTTTG
GACTCGGATATCGGGCTCTTATAGGAATGGCGACGTCATCCGTTTTTACG
AGTTTTGTCGTTGGGAGTTTATCGTGGACGTTCGGAACATGTATGCAAAA
GGGGTGCGCAAAACTCGGGATGAGGCAAATTCGGTCTGCGAGAAGAGCAA
AATCTTTAGCATGGACACTGCTTGAGGTTGTGGAACCCGCAATGCGATCT
GTAAGCAAGATGTTCGCCGCACTTTCGCTAGTGTTCGTGCTATTGATGCC
TCCCGACACAAGCCGTGGATGGATCGGAGGAATTCTCTTTGCCGCCGTGG
TCCTGGGCGTGTGGGCCTACACTATGTGGAGGCACTGCGGGAGAAAACGC
GACACAAGTCAAAGACAGATCCCTCTTCATGCATCTAGGCCGGTCAGTCC
ATTTTTTGTGGAATCACCAACGTTTAATCCGTTCAATGTTGTTCCTGGGA
GTCAGATGTCAGAAGCACTTCTTGCTTTCGGCGGGCAACCGAAACTGCCC
GTGAGTCCTCAAGTTTTGCCGGGACTTTCGCGTCGATCACGGGCTGAGTT
CACATCAGTCACATTGGAACCGTTGAGTTCCCCTCGAGTTGGTAATCCCA
CGAAAATCTCATCCACAGTGCTTCGTGACGAAACCGGAAGAACTCCAAGA
GGGGACTGGATGGTGTGA

protein sequence of Gcaud1952.t2

>Gcaud1952.t2 ID=Gcaud1952.t2|Name=Gcaud1952.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=506bp
MIADNYRPMTASGRNLGPASATSWKLFLCCLIGFFAAITVSWFCGLFFSS
DSYKPAVVVQKAAQSGTNALFVQCLGNGILCSVGGGALIIASILSSFALY
DAFGVGVMTIAYMSMGGVACTAVALGSVGRSAHGISCVTSQTRAARNGGI
VKGMSTQIAAAGASFSQGASALTGFTLVLATLQQAGLQLSPRDLVGGPEQ
PPAKLISGTGFIPMDVLVVCGLVIGGVIPLIIAGTLWAVARQHSVLKLRQ
MGTDSVRQIGLLSLLESILPVGIALLSPFVVGFGLGYRALIGMATSSVFT
SFVVGSLSWTFGTCMQKGCAKLGMRQIRSARRAKSLAWTLLEVVEPAMRS
VSKMFAALSLVFVLLMPPDTSRGWIGGILFAAVVLGVWAYTMWRHCGRKR
DTSQRQIPLHASRPVSPFFVESPTFNPFNVVPGSQMSEALLAFGGQPKLP
VSPQVLPGLSRRSRAEFTSVTLEPLSSPRVGNPTKISSTVLRDETGRTPR
GDWMV*

mRNA from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1952.t2 ID=Gcaud1952.t2|Name=Gcaud1952.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+ (Gracilaria caudata M_176_S67 male)
ATGATAGCGGACAACTATCGGCCAATGACTGCTTCAGGGCGAAATCTAGG
GCCTGCGTCTGCAACATCCTGGAAGCTGTTCCTTTGTTGCCTCATTGGAT
TTTTCGCTGCTATCACCGTAAGTTGGTTCTGCGGATTATTCTTCTCATCG
GATTCATACAAGCCGGCCGTTGTTGTGCAGAAGGCGGCACAGTCCGGAAC
GAATGCGCTTTTTGTTCAGTGTCTTGGAAATGGAATCCTCTGCAGTGTAG
GTGGGGGTGCTCTCATCATTGCATCTATTCTGTCCTCGTTTGCTCTTTAT
GATGCTTTTGGAGTCGGAGTTATGACAATTGCCTACATGAGTATGGGTGG
GGTTGCTTGTACAGCCGTCGCATTGGGTTCCGTTGGACGTAGTGCCCATG
GTATTTCTTGTGTCACATCTCAAACTCGTGCGGCGAGAAATGGTGGTATT
GTCAAAGGAATGAGTACTCAAATCGCTGCTGCTGGCGCGAGCTTTTCGCA
AGGCGCATCAGCACTGACTGGTTTCACACTTGTTCTAGCCACACTGCAGC
AAGCAGGTCTTCAGCTTTCACCGAGAGACCTTGTGGGAGGACCAGAACAG
CCCCCAGCGAAACTCATCTCTGGCACTGGCTTCATACCAATGGACGTTCT
TGTGGTCTGTGGGCTCGTAATAGGGGGCGTTATTCCCTTGATTATTGCCG
GTACTTTGTGGGCAGTCGCTAGACAACACTCAGTGTTGAAACTGAGACAA
ATGGGAACAGATTCAGTTCGTCAAATAGGACTGTTATCGTTACTAGAAAG
CATCTTGCCAGTCGGGATTGCTCTTCTTTCTCCCTTCGTGGTTGGGTTTG
GACTCGGATATCGGGCTCTTATAGGAATGGCGACGTCATCCGTTTTTACG
AGTTTTGTCGTTGGGAGTTTATCGTGGACGTTCGGAACATGTATGCAAAA
GGGGTGCGCAAAACTCGGGATGAGGCAAATTCGGTCTGCGAGAAGAGCAA
AATCTTTAGCATGGACACTGCTTGAGGTTGTGGAACCCGCAATGCGATCT
GTAAGCAAGATGTTCGCCGCACTTTCGCTAGTGTTCGTGCTATTGATGCC
TCCCGACACAAGCCGTGGATGGATCGGAGGAATTCTCTTTGCCGCCGTGG
TCCTGGGCGTGTGGGCCTACACTATGTGGAGGCACTGCGGGAGAAAACGC
GACACAAGTCAAAGACAGATCCCTCTTCATGCATCTAGGCCGGTCAGTCC
ATTTTTTGTGGAATCACCAACGTTTAATCCGTTCAATGTTGTTCCTGGGA
GTCAGATGTCAGAAGCACTTCTTGCTTTCGGCGGGCAACCGAAACTGCCC
GTGAGTCCTCAAGTTTTGCCGGGACTTTCGCGTCGATCACGGGCTGAGTT
CACATCAGTCACATTGGAACCGTTGAGTTCCCCTCGAGTTGGTAATCCCA
CGAAAATCTCATCCACAGTGCTTCGTGACGAAACCGGAAGAACTCCAAGA
GGGGACTGGATGGTGTGA

Coding sequence (CDS) from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+

>Gcaud1952.t2 ID=Gcaud1952.t2|Name=Gcaud1952.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1518bp|location=Sequence derived from alignment at NODE_821_length_17530_cov_5.307414:15199..16716+ (Gracilaria caudata M_176_S67 male)
ATGATAGCGGACAACTATCGGCCAATGACTGCTTCAGGGCGAAATCTAGG
GCCTGCGTCTGCAACATCCTGGAAGCTGTTCCTTTGTTGCCTCATTGGAT
TTTTCGCTGCTATCACCGTAAGTTGGTTCTGCGGATTATTCTTCTCATCG
GATTCATACAAGCCGGCCGTTGTTGTGCAGAAGGCGGCACAGTCCGGAAC
GAATGCGCTTTTTGTTCAGTGTCTTGGAAATGGAATCCTCTGCAGTGTAG
GTGGGGGTGCTCTCATCATTGCATCTATTCTGTCCTCGTTTGCTCTTTAT
GATGCTTTTGGAGTCGGAGTTATGACAATTGCCTACATGAGTATGGGTGG
GGTTGCTTGTACAGCCGTCGCATTGGGTTCCGTTGGACGTAGTGCCCATG
GTATTTCTTGTGTCACATCTCAAACTCGTGCGGCGAGAAATGGTGGTATT
GTCAAAGGAATGAGTACTCAAATCGCTGCTGCTGGCGCGAGCTTTTCGCA
AGGCGCATCAGCACTGACTGGTTTCACACTTGTTCTAGCCACACTGCAGC
AAGCAGGTCTTCAGCTTTCACCGAGAGACCTTGTGGGAGGACCAGAACAG
CCCCCAGCGAAACTCATCTCTGGCACTGGCTTCATACCAATGGACGTTCT
TGTGGTCTGTGGGCTCGTAATAGGGGGCGTTATTCCCTTGATTATTGCCG
GTACTTTGTGGGCAGTCGCTAGACAACACTCAGTGTTGAAACTGAGACAA
ATGGGAACAGATTCAGTTCGTCAAATAGGACTGTTATCGTTACTAGAAAG
CATCTTGCCAGTCGGGATTGCTCTTCTTTCTCCCTTCGTGGTTGGGTTTG
GACTCGGATATCGGGCTCTTATAGGAATGGCGACGTCATCCGTTTTTACG
AGTTTTGTCGTTGGGAGTTTATCGTGGACGTTCGGAACATGTATGCAAAA
GGGGTGCGCAAAACTCGGGATGAGGCAAATTCGGTCTGCGAGAAGAGCAA
AATCTTTAGCATGGACACTGCTTGAGGTTGTGGAACCCGCAATGCGATCT
GTAAGCAAGATGTTCGCCGCACTTTCGCTAGTGTTCGTGCTATTGATGCC
TCCCGACACAAGCCGTGGATGGATCGGAGGAATTCTCTTTGCCGCCGTGG
TCCTGGGCGTGTGGGCCTACACTATGTGGAGGCACTGCGGGAGAAAACGC
GACACAAGTCAAAGACAGATCCCTCTTCATGCATCTAGGCCGGTCAGTCC
ATTTTTTGTGGAATCACCAACGTTTAATCCGTTCAATGTTGTTCCTGGGA
GTCAGATGTCAGAAGCACTTCTTGCTTTCGGCGGGCAACCGAAACTGCCC
GTGAGTCCTCAAGTTTTGCCGGGACTTTCGCGTCGATCACGGGCTGAGTT
CACATCAGTCACATTGGAACCGTTGAGTTCCCCTCGAGTTGGTAATCCCA
CGAAAATCTCATCCACAGTGCTTCGTGACGAAACCGGAAGAACTCCAAGA
GGGGACTGGATGGTGTGA