Gcaud2944.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2944.t1
Unique Name	Gcaud2944.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	177

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_816_length_17601_cov_4.570017	contig	NODE_816_length_17601_cov_4.570017:4748..5278 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS389CT
Preferred name	FAM210B
PFAMs	DUF1279
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20815
GOs	GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010467,GO:0014070,GO:0016020,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0019867,GO:0031090,GO:0031224,GO:0031365,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032355,GO:0032870,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045646,GO:0045648,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051604,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071392,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0098588,GO:0098805,GO:1901564,GO:1901700,GO:1901701,GO:1903706,GO:1903708,GO:2000026
Evalue	3.74e-32
EggNOG OGs	KOG4526@1\|root,KOG4526@2759\|Eukaryota
Description	N-terminal peptidyl-methionine acetylation
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2944	Gcaud2944	Gracilaria caudata M_176_S67 male	gene	NODE_816_length_17601_cov_4.570017 4748..5278 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2944.t1.stop1	Gcaud2944.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_816_length_17601_cov_4.570017 4748..4750 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2944.t1.CDS1	Gcaud2944.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_816_length_17601_cov_4.570017 4748..5278 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2944.t1.exon1	Gcaud2944.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_816_length_17601_cov_4.570017 4748..5278 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2944.t1.start1	Gcaud2944.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_816_length_17601_cov_4.570017 5276..5278 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2944.t1	Gcaud2944.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_816_length_17601_cov_4.570017 4748..5278 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_816_length_17601_cov_4.570017:4748..5278-
coding sequence from alignment at NODE_816_length_17601_cov_4.570017:4748..5278-

mRNA sequence

>Gcaud2944.t1 ID=Gcaud2944.t1|Name=Gcaud2944.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MAFIINYTRASQKAHTTVAWANRKFSGLSRTQPLPTRRVRWLVDDRPACT
APRVLTCMSSSNSTKPDAKELAKLYGGSYLGTSIGLSIISYAVLYAMVAI
GVDVRALMNSFGDFLAMTPLGRPSIIDNISDTASTAAIAYVAHKAMSPLR
FPLTVAATPVVANFFKKDAESEEASS*

spliced messenger RNA

>Gcaud2944.t1 ID=Gcaud2944.t1|Name=Gcaud2944.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:4748..5278- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTATCATCAACTACACACGAGCCTCTCAAAAGGCACACACGAC
CGTCGCTTGGGCAAACCGCAAGTTTTCAGGACTATCGCGAACCCAACCCC
TACCTACGCGACGCGTTCGATGGCTTGTTGACGATAGACCCGCCTGTACC
GCACCACGGGTACTAACATGCATGTCGAGTAGCAATTCCACAAAGCCCGA
TGCAAAGGAGTTGGCAAAGCTCTATGGTGGTTCTTATTTGGGCACCTCAA
TCGGACTGTCGATCATATCGTACGCGGTTTTGTATGCAATGGTTGCAATT
GGTGTGGATGTCAGAGCATTAATGAATTCCTTCGGTGATTTCTTGGCTAT
GACCCCCCTCGGAAGACCTTCTATCATTGACAACATATCTGACACGGCAA
GCACAGCTGCGATTGCATACGTAGCCCACAAAGCAATGAGCCCTCTCCGA
TTTCCGCTCACCGTCGCCGCGACACCAGTAGTGGCTAATTTCTTCAAGAA
AGATGCAGAATCAGAAGAAGCATCTTCATAA

protein sequence of Gcaud2944.t1

>Gcaud2944.t1 ID=Gcaud2944.t1|Name=Gcaud2944.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MAFIINYTRASQKAHTTVAWANRKFSGLSRTQPLPTRRVRWLVDDRPACT
APRVLTCMSSSNSTKPDAKELAKLYGGSYLGTSIGLSIISYAVLYAMVAI
GVDVRALMNSFGDFLAMTPLGRPSIIDNISDTASTAAIAYVAHKAMSPLR
FPLTVAATPVVANFFKKDAESEEASS*

mRNA from alignment at NODE_816_length_17601_cov_4.570017:4748..5278-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2944.t1 ID=Gcaud2944.t1|Name=Gcaud2944.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:4748..5278- (Gracilaria caudata M_176_S67 male)
ATGGCTTTTATCATCAACTACACACGAGCCTCTCAAAAGGCACACACGAC
CGTCGCTTGGGCAAACCGCAAGTTTTCAGGACTATCGCGAACCCAACCCC
TACCTACGCGACGCGTTCGATGGCTTGTTGACGATAGACCCGCCTGTACC
GCACCACGGGTACTAACATGCATGTCGAGTAGCAATTCCACAAAGCCCGA
TGCAAAGGAGTTGGCAAAGCTCTATGGTGGTTCTTATTTGGGCACCTCAA
TCGGACTGTCGATCATATCGTACGCGGTTTTGTATGCAATGGTTGCAATT
GGTGTGGATGTCAGAGCATTAATGAATTCCTTCGGTGATTTCTTGGCTAT
GACCCCCCTCGGAAGACCTTCTATCATTGACAACATATCTGACACGGCAA
GCACAGCTGCGATTGCATACGTAGCCCACAAAGCAATGAGCCCTCTCCGA
TTTCCGCTCACCGTCGCCGCGACACCAGTAGTGGCTAATTTCTTCAAGAA
AGATGCAGAATCAGAAGAAGCATCTTCATAA

Coding sequence (CDS) from alignment at NODE_816_length_17601_cov_4.570017:4748..5278-

>Gcaud2944.t1 ID=Gcaud2944.t1|Name=Gcaud2944.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=531bp|location=Sequence derived from alignment at NODE_816_length_17601_cov_4.570017:4748..5278- (Gracilaria caudata M_176_S67 male)
ATGGCTTTTATCATCAACTACACACGAGCCTCTCAAAAGGCACACACGAC
CGTCGCTTGGGCAAACCGCAAGTTTTCAGGACTATCGCGAACCCAACCCC
TACCTACGCGACGCGTTCGATGGCTTGTTGACGATAGACCCGCCTGTACC
GCACCACGGGTACTAACATGCATGTCGAGTAGCAATTCCACAAAGCCCGA
TGCAAAGGAGTTGGCAAAGCTCTATGGTGGTTCTTATTTGGGCACCTCAA
TCGGACTGTCGATCATATCGTACGCGGTTTTGTATGCAATGGTTGCAATT
GGTGTGGATGTCAGAGCATTAATGAATTCCTTCGGTGATTTCTTGGCTAT
GACCCCCCTCGGAAGACCTTCTATCATTGACAACATATCTGACACGGCAA
GCACAGCTGCGATTGCATACGTAGCCCACAAAGCAATGAGCCCTCTCCGA
TTTCCGCTCACCGTCGCCGCGACACCAGTAGTGGCTAATTTCTTCAAGAA
AGATGCAGAATCAGAAGAAGCATCTTCATAA