Gcaud2252.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2252.t1
Unique NameGcaud2252.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_813_length_17642_cov_4.699447contigNODE_813_length_17642_cov_4.699447:6133..6642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2252Gcaud2252Gracilaria caudata M_176_S67 malegeneNODE_813_length_17642_cov_4.699447 6133..6642 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2252.t1.start1Gcaud2252.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_813_length_17642_cov_4.699447 6133..6135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2252.t1.CDS1Gcaud2252.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_813_length_17642_cov_4.699447 6133..6642 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2252.t1.exon1Gcaud2252.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_813_length_17642_cov_4.699447 6133..6642 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2252.t1.stop1Gcaud2252.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_813_length_17642_cov_4.699447 6640..6642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2252.t1Gcaud2252.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_813_length_17642_cov_4.699447 6133..6642 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2252.t1 ID=Gcaud2252.t1|Name=Gcaud2252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=170bp
MSSKDSKCPSARTPSEEEPTEKKNTTVSLLMRRKLKSRSYESLKVMWSSP
WRQAYEPERPLAFRGVSSKVSLSDLFARPGEVYLSSDEQNFFNDRHTSET
ALALFRFGICIEQASRLTAMIRETVLNPLRMEAKLTPEEVEDVSYMFVDV
YALAKMAWVLMCEGFMHCS*
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spliced messenger RNA

>Gcaud2252.t1 ID=Gcaud2252.t1|Name=Gcaud2252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:6133..6642+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTAAGGATTCGAAATGCCCATCAGCTCGCACACCTTCTGAGGA
AGAACCAACGGAGAAGAAGAATACAACTGTATCGCTTCTTATGCGACGAA
AGTTGAAGTCTAGGTCTTATGAGAGCTTGAAGGTCATGTGGTCCTCGCCC
TGGAGGCAAGCGTACGAACCAGAGAGGCCTCTCGCTTTTCGGGGGGTTAG
TTCGAAAGTTAGCCTCAGTGACCTGTTTGCGCGGCCTGGGGAAGTGTACT
TGTCCTCAGACGAGCAAAACTTTTTCAATGACAGGCACACTTCGGAGACC
GCTCTTGCGCTGTTCAGGTTTGGTATCTGCATTGAACAAGCTAGTCGTTT
AACAGCTATGATTAGGGAAACTGTTCTGAATCCTCTACGTATGGAAGCAA
AGCTCACGCCGGAAGAGGTAGAGGATGTAAGCTATATGTTTGTGGATGTG
TACGCTTTGGCTAAGATGGCTTGGGTGCTCATGTGCGAAGGTTTCATGCA
TTGCTCCTAG
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protein sequence of Gcaud2252.t1

>Gcaud2252.t1 ID=Gcaud2252.t1|Name=Gcaud2252.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MSSKDSKCPSARTPSEEEPTEKKNTTVSLLMRRKLKSRSYESLKVMWSSP
WRQAYEPERPLAFRGVSSKVSLSDLFARPGEVYLSSDEQNFFNDRHTSET
ALALFRFGICIEQASRLTAMIRETVLNPLRMEAKLTPEEVEDVSYMFVDV
YALAKMAWVLMCEGFMHCS*
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mRNA from alignment at NODE_813_length_17642_cov_4.699447:6133..6642+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2252.t1 ID=Gcaud2252.t1|Name=Gcaud2252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:6133..6642+ (Gracilaria caudata M_176_S67 male)
ATGTCGTCTAAGGATTCGAAATGCCCATCAGCTCGCACACCTTCTGAGGA
AGAACCAACGGAGAAGAAGAATACAACTGTATCGCTTCTTATGCGACGAA
AGTTGAAGTCTAGGTCTTATGAGAGCTTGAAGGTCATGTGGTCCTCGCCC
TGGAGGCAAGCGTACGAACCAGAGAGGCCTCTCGCTTTTCGGGGGGTTAG
TTCGAAAGTTAGCCTCAGTGACCTGTTTGCGCGGCCTGGGGAAGTGTACT
TGTCCTCAGACGAGCAAAACTTTTTCAATGACAGGCACACTTCGGAGACC
GCTCTTGCGCTGTTCAGGTTTGGTATCTGCATTGAACAAGCTAGTCGTTT
AACAGCTATGATTAGGGAAACTGTTCTGAATCCTCTACGTATGGAAGCAA
AGCTCACGCCGGAAGAGGTAGAGGATGTAAGCTATATGTTTGTGGATGTG
TACGCTTTGGCTAAGATGGCTTGGGTGCTCATGTGCGAAGGTTTCATGCA
TTGCTCCTAG
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Coding sequence (CDS) from alignment at NODE_813_length_17642_cov_4.699447:6133..6642+

>Gcaud2252.t1 ID=Gcaud2252.t1|Name=Gcaud2252.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=510bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:6133..6642+ (Gracilaria caudata M_176_S67 male)
ATGTCGTCTAAGGATTCGAAATGCCCATCAGCTCGCACACCTTCTGAGGA
AGAACCAACGGAGAAGAAGAATACAACTGTATCGCTTCTTATGCGACGAA
AGTTGAAGTCTAGGTCTTATGAGAGCTTGAAGGTCATGTGGTCCTCGCCC
TGGAGGCAAGCGTACGAACCAGAGAGGCCTCTCGCTTTTCGGGGGGTTAG
TTCGAAAGTTAGCCTCAGTGACCTGTTTGCGCGGCCTGGGGAAGTGTACT
TGTCCTCAGACGAGCAAAACTTTTTCAATGACAGGCACACTTCGGAGACC
GCTCTTGCGCTGTTCAGGTTTGGTATCTGCATTGAACAAGCTAGTCGTTT
AACAGCTATGATTAGGGAAACTGTTCTGAATCCTCTACGTATGGAAGCAA
AGCTCACGCCGGAAGAGGTAGAGGATGTAAGCTATATGTTTGTGGATGTG
TACGCTTTGGCTAAGATGGCTTGGGTGCTCATGTGCGAAGGTTTCATGCA
TTGCTCCTAG
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