Gcaud1870.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1870.t1
Unique NameGcaud1870.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length169
Homology
BLAST of Gcaud1870.t1 vs. uniprot
Match: A0A2V3IKH6_9FLOR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKH6_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 8.820e-49
Identity = 98/166 (59.04%), Postives = 113/166 (68.07%), Query Frame = 0
Query:    1 MGEEGVLDAAKEGALSGLYFGATVGAIRAFLYGDAAPAAATTTAPAPAAPKQPPSVTSLATSALRAARPTPLSMLVSTTVIYSGLGAVYLGTGKFAHDVRDKDDMWNSVIGGVVAGSLCGLRTGSFYISAGAAGSLAAVSALYHIFDGQFGPQKDNPGIRRRRAVY 166
            M E GVL +AKEGA+ G Y G TV A RAFL   A P+      P PA  K  P   SL TS    AR +PL M+ STT IYS LGAVY+ T   A D R+KDDMWNSVI G VAGSL G+R+ S Y+SAGAA SLA+VSALYHIFDGQFG  KDN  ++RR+A+Y
Sbjct:    1 MSESGVLQSAKEGAVPGAYAGFTVAAARAFLAAGAPPS------PVPA--KSSPVSKSLLTSV---ARSSPLPMIASTTAIYSALGAVYMATTTLARDTRNKDDMWNSVIAGAVAGSLVGIRSSSLYMSAGAAASLASVSALYHIFDGQFGAPKDNRVVQRRKAIY 155          
BLAST of Gcaud1870.t1 vs. uniprot
Match: F9XND8_ZYMTI (Uncharacterized protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XND8_ZYMTI)

HSP 1 Score: 55.5 bits (132), Expect = 2.350e-6
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 0
Query:   77 STTVIYSGLGAVYLGTGKFAHDVRDKDDMWNSVIGGVVAGSLCGLRTGSFYISAGAAGSLAAVSALYHIFDGQFGPQKDNPGI 159
            ST  +++ +G  Y  T   A ++R KDD WN+ IGG  AG++ GLR  S     G   ++A V + +H   G+    K +P I
Sbjct:   56 STIAVFAAMGGAYSFTSCAAANLRQKDDTWNTTIGGAFAGTMLGLRFRSGPAVIGYGSAMAVVLSAFHFTGGRMSGFKKDPEI 138          
BLAST of Gcaud1870.t1 vs. uniprot
Match: B8M9A1_TALSN (NADH-ubiquinone oxidoreductase 213 kDa subunit n=1 Tax=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) TaxID=441959 RepID=B8M9A1_TALSN)

HSP 1 Score: 53.9 bits (128), Expect = 9.000e-6
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0
Query:   77 STTVIYSGLGAVYLGTGKFAHDVRDKDDMWNSVIGGVVAGSLCGLRTGSFYISAGAAGSLAAVSALYHIFDGQ-FGPQKDN 156
            ST  I++ +G  Y      + ++R+KDD WN+ +GG  AGS+ GLR  SF    G    LAA  A +    G  FG  KD+
Sbjct:   57 STIAIFAAMGGTYSFVRTASANLREKDDTWNTALGGFFAGSILGLRVRSFPSVFGYGTGLAATLATFEYTGGSLFGKPKDH 137          
The following BLAST results are available for this feature:
BLAST of Gcaud1870.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IKH6_9FLOR8.820e-4959.04NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
F9XND8_ZYMTI2.350e-634.94Uncharacterized protein n=5 Tax=Zymoseptoria TaxID... [more]
B8M9A1_TALSN9.000e-638.27NADH-ubiquinone oxidoreductase 213 kDa subunit n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039205NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11PANTHERPTHR21382NADH-UBIQUINONE OXIDOREDUCTASE SUBUNITcoord: 70..154
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 147..168
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 93..125
NoneNo IPR availableTMHMMTMhelixcoord: 124..146
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 15..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1195_length_12786_cov_4.314848contigNODE_1195_length_12786_cov_4.314848:4302..4880 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1870.t1Gcaud1870.t1Gracilaria caudata M_176_S67 malemRNANODE_1195_length_12786_cov_4.314848 4302..4880 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1870.t1 ID=Gcaud1870.t1|Name=Gcaud1870.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=169bp
MGEEGVLDAAKEGALSGLYFGATVGAIRAFLYGDAAPAAATTTAPAPAAP
KQPPSVTSLATSALRAARPTPLSMLVSTTVIYSGLGAVYLGTGKFAHDVR
DKDDMWNSVIGGVVAGSLCGLRTGSFYISAGAAGSLAAVSALYHIFDGQF
GPQKDNPGIRRRRAVYQD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039205NDUFA11