Gcaud1900.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1900.t1
Unique NameGcaud1900.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length135
Homology
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BLAST of Gcaud1900.t1 vs. uniprot
Match: A0A2V3IK44_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK44_9FLOR)

HSP 1 Score: 74.3 bits (181), Expect = 1.620e-13
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0 
Query:   53 VSCVILVLVISGISAFLRPELKGKARRIQIMLRGRLLRLKEDYQKQ--TTP-GKGPLDLGPDMKELRTLQRGARRHLKSLRSTLD 134
            V   +L+ ++S ++  L P L  + +RI I  R  L R ++    +  TTP GKGPLD+GPD  ELR LQRGARRHLKSL+STLD
Sbjct:  154 VPLTMLLAIVSALACSLSPALNARFQRIAITFRATLHRCRQALHNRRGTTPVGKGPLDIGPDRSELRNLQRGARRHLKSLQSTLD 238
The following BLAST results are available for this feature:
BLAST of Gcaud1900.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IK44_9FLOR1.620e-1350.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..69
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..134
NoneNo IPR availableTMHMMTMhelixcoord: 50..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_807_length_17687_cov_4.345135contigNODE_807_length_17687_cov_4.345135:12809..13213 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1900.t1Gcaud1900.t1Gracilaria caudata M_176_S67 malemRNANODE_807_length_17687_cov_4.345135 12809..13213 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1900.t1 ID=Gcaud1900.t1|Name=Gcaud1900.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=135bp
MCLANPAPDVFETEEISKATADRANGNPSNAKTAVTPDVSMAKKGTSSRS
LFVSCVILVLVISGISAFLRPELKGKARRIQIMLRGRLLRLKEDYQKQTT
PGKGPLDLGPDMKELRTLQRGARRHLKSLRSTLD*
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