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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005709065.1 |
| PFAMs | OTU |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K13719 |
| KEGG Pathway | ko04141,map04141 |
| GOs | GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0030968,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071704,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698 |
| Evalue | 7.12e-50 |
| EggNOG OGs | COG5539@1|root,KOG3288@2759|Eukaryota |
| Description | ubiquitin-specific protease activity involved in negative regulation of retrograde protein transport, ER to cytosol |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko01002 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1897.t1.stop1 | Gcaud1897.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_807_length_17687_cov_4.345135 8155..8157 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1897.t1.start1 | Gcaud1897.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_807_length_17687_cov_4.345135 9364..9366 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1897.t1 ID=Gcaud1897.t1|Name=Gcaud1897.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MKLRVRSSRGVADLQVDPASTFGSLKAQLGATSLRSGFPPRPLAADDESP
LSSVLSHGDVLVVQSTTSPVSSAPQPIARSTTKPPASSATTNSSIPPSSI
LSNGKLVIREVPDDNSCLFRSVNALLGRAAQSPVSLRTIVRDAVALQPDL
YGEAFLGRSNYEYQVWIMNDNSWGGAIELSILATHFKIELAAFDVKTMRL
DRYGEGNGYHTVGFLIYDGIHYNYVALALGGASSSLELDVTQFEVHDTIV
LDHVRKVAQAQHDARKYTDTANASFKCGQVKGTHQF* back to topspliced messenger RNA >Gcaud1897.t1 ID=Gcaud1897.t1|Name=Gcaud1897.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:8155..9366- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGCTGCGAGTGCGCTCCAGTCGGGGCGTCGCCGACCTGCAGGTCGA
CCCGGCCTCCACTTTTGGATCGCTCAAGGCTCAATTAGGTGCTACATCGC
TGCGCAGCGGTTTCCCTCCAAGACCCCTTGCCGCTGATGACGAATCGCCC
TTATCTTCTGTTTTATCCCACGGAGATGTGCTCGTCGTCCAGTCCACAAC
GTCACCCGTCTCATCTGCGCCACAACCAATTGCACGAAGTACTACTAAGC
CCCCTGCATCTTCCGCCACTACTAATTCATCTATTCCGCCTTCATCCATT
CTGTCAAATGGCAAGCTCGTTATTCGAGAGGTTCCAGACGATAACTCGTG
CCTTTTCCGCTCTGTTAATGCCCTTCTCGGACGCGCTGCGCAATCACCAG
TATCATTAAGAACAATTGTACGAGACGCAGTAGCCCTTCAGCCAGACTTA
TATGGTGAGGCCTTTTTGGGTCGATCCAACTACGAATACCAGGTTTGGAT
CATGAATGATAACTCATGGGGTGGAGCCATTGAACTTTCTATTCTTGCTA
CACATTTCAAGATAGAGCTCGCTGCATTCGATGTCAAGACGATGCGGTTG
GACCGTTACGGCGAAGGTAATGGATACCACACCGTTGGTTTTCTCATCTA
TGACGGAATCCATTACAATTACGTGGCCCTTGCGCTCGGTGGCGCATCCT
CATCGCTGGAGTTAGATGTGACGCAGTTCGAAGTGCATGACACCATCGTT
CTCGACCATGTGAGGAAGGTAGCCCAAGCGCAGCACGACGCAAGAAAGTA
CACAGATACAGCCAACGCCAGCTTTAAGTGTGGCCAAGTAAAGGGAACGC
ACCAGTTTTGA back to topprotein sequence of Gcaud1897.t1 >Gcaud1897.t1 ID=Gcaud1897.t1|Name=Gcaud1897.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MKLRVRSSRGVADLQVDPASTFGSLKAQLGATSLRSGFPPRPLAADDESP
LSSVLSHGDVLVVQSTTSPVSSAPQPIARSTTKPPASSATTNSSIPPSSI
LSNGKLVIREVPDDNSCLFRSVNALLGRAAQSPVSLRTIVRDAVALQPDL
YGEAFLGRSNYEYQVWIMNDNSWGGAIELSILATHFKIELAAFDVKTMRL
DRYGEGNGYHTVGFLIYDGIHYNYVALALGGASSSLELDVTQFEVHDTIV
LDHVRKVAQAQHDARKYTDTANASFKCGQVKGTHQF* back to topmRNA from alignment at NODE_807_length_17687_cov_4.345135:8155..9366- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1897.t1 ID=Gcaud1897.t1|Name=Gcaud1897.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:8155..9366- (Gracilaria caudata M_176_S67 male)
ATGAAGCTGCGAGTGCGCTCCAGTCGGGGCGTCGCCGACCTGCAGGTCGA
CCCGGCCTCCACTTTTGGATCGCTCAAGGCTCAATTAGGTGCTACATCGC
GTATGTTCTTTCTCTCTCAACATCTTCAGGCTGTATTTTTCTGACTCCTT
AACTGCTCCCTTCTGTCCTCCTCCTTGCTTTCTTACTTTGCACGCAGTGC
GCAGCGGTTTCCCTCCAAGACCCCTTGCCGCTGATGACGAATCGCCCTTA
TCTTCTGTTTTATCCCACGGAGATGTGCTCGTCGTCCAGTCCACAACGTC
ACCCGTCTCATCTGCGCCACAACCAATTGCACGAAGTACTACTAAGCCCC
CTGCATCTTCCGCCACTACTAATTCATCTATTCCGCCTTCATCCATTCTG
TCAAATGGCAAGCTCGTTATTCGAGAGGTTCCAGACGATAACTCGTGCCT
TTTCCGCTCTGTTAATGCCCTTCTCGGACGCGCTGCGCAATCACCAGTAT
CATTAAGAACAATTGTACGAGACGCAGTAGCCCTTCAGCCAGACTTATAT
GGTGAGGCCTTTTTGGGTCGATCCAACTACGAATACCAGGTTTGGATCAT
GAATGATAACTCATGGGGTGGAGCCATTGAACTTTCTATTCTTGCTACAC
ATTTCAAGATAGAGCTCGCTGCATTCGATGTCAAGACGATGCGGTTGGAC
CGTTACGGCGAAGGTAATGGATACCACACCGTTGGTTTTCTCATCTATGA
CGGAATCCATTACAATTACGTGGCCCTTGCGCTCGGTGGCGCATCCTCAT
CGCTGGAGTTAGATGTGACGCAGTTCGAAGTGCATGACACCATCGTTCTC
GACCATGTGAGGAAGGTAGCCCAAGCGCAGCACGACGCAAGAAAGTACAC
AGATACAGCCAACGCCAGCTTTAAGTGTGGCCAGTGCGGTGTCGTGTTGA
AAGGAGAACAACAAGTCGCTGTCCATGCCAAACAAAGTGGTCATTCGCAG
TTTTCTGAATACTGAACTTTGAAACATGCCATGCTAACAATCTCCGAATT
TGAAATGTGAACGTATAACTTGAGTGCTTTTGCGATTTCTCTTTGACGGC
TTTTCGGATAAAGAGTAAAGGGGTAAGCGATAATTAACTGTCGAACGCGT
TAACTTTGCCTAAACCCTGATGCTGACGTTACCGCTTCTCGAGCAGAACG
CACCAGTTTTGA back to topCoding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:8155..9366- >Gcaud1897.t1 ID=Gcaud1897.t1|Name=Gcaud1897.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:8155..9366- (Gracilaria caudata M_176_S67 male)
ATGAAGCTGCGAGTGCGCTCCAGTCGGGGCGTCGCCGACCTGCAGGTCGA
CCCGGCCTCCACTTTTGGATCGCTCAAGGCTCAATTAGGTGCTACATCGC
TGCGCAGCGGTTTCCCTCCAAGACCCCTTGCCGCTGATGACGAATCGCCC
TTATCTTCTGTTTTATCCCACGGAGATGTGCTCGTCGTCCAGTCCACAAC
GTCACCCGTCTCATCTGCGCCACAACCAATTGCACGAAGTACTACTAAGC
CCCCTGCATCTTCCGCCACTACTAATTCATCTATTCCGCCTTCATCCATT
CTGTCAAATGGCAAGCTCGTTATTCGAGAGGTTCCAGACGATAACTCGTG
CCTTTTCCGCTCTGTTAATGCCCTTCTCGGACGCGCTGCGCAATCACCAG
TATCATTAAGAACAATTGTACGAGACGCAGTAGCCCTTCAGCCAGACTTA
TATGGTGAGGCCTTTTTGGGTCGATCCAACTACGAATACCAGGTTTGGAT
CATGAATGATAACTCATGGGGTGGAGCCATTGAACTTTCTATTCTTGCTA
CACATTTCAAGATAGAGCTCGCTGCATTCGATGTCAAGACGATGCGGTTG
GACCGTTACGGCGAAGGTAATGGATACCACACCGTTGGTTTTCTCATCTA
TGACGGAATCCATTACAATTACGTGGCCCTTGCGCTCGGTGGCGCATCCT
CATCGCTGGAGTTAGATGTGACGCAGTTCGAAGTGCATGACACCATCGTT
CTCGACCATGTGAGGAAGGTAGCCCAAGCGCAGCACGACGCAAGAAAGTA
CACAGATACAGCCAACGCCAGCTTTAAGTGTGGCCAAGTAAAGGGAACGC
ACCAGTTTTGA back to top
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