Gcaud1894.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1894.t1
Unique Name	Gcaud1894.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_807_length_17687_cov_4.345135	contig	NODE_807_length_17687_cov_4.345135:1708..3326 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ17624
PFAMs	AMPK1_CBM,AMPKBI
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07199
KEGG Pathway	ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Evalue	5.89e-28
EggNOG OGs	KOG1616@1\|root,KOG1616@2759\|Eukaryota,37RTB@33090\|Viridiplantae,3GCN6@35493\|Streptophyta
Description	snf1-related protein kinase regulatory subunit
COG category	G
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1894	Gcaud1894	Gracilaria caudata M_176_S67 male	gene	NODE_807_length_17687_cov_4.345135 1708..3326 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1894.t1	Gcaud1894.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_807_length_17687_cov_4.345135 1708..3326 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1894.t1.stop1	Gcaud1894.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_807_length_17687_cov_4.345135 1708..1710 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1894.t1.CDS1	Gcaud1894.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 1708..2408 -
Gcaud1894.t1.CDS2	Gcaud1894.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 3095..3200 -
Gcaud1894.t1.CDS3	Gcaud1894.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 3291..3326 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1894.t1.exon1	Gcaud1894.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 1708..2408 -
Gcaud1894.t1.exon2	Gcaud1894.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 3095..3200 -
Gcaud1894.t1.exon3	Gcaud1894.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 3291..3326 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1894.t1.intron1	Gcaud1894.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_807_length_17687_cov_4.345135 2409..3094 -
Gcaud1894.t1.intron2	Gcaud1894.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_807_length_17687_cov_4.345135 3201..3290 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1894.t1.start1	Gcaud1894.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_807_length_17687_cov_4.345135 3324..3326 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_807_length_17687_cov_4.345135:1708..3326-
coding sequence from alignment at NODE_807_length_17687_cov_4.345135:1708..3326-

mRNA sequence

>Gcaud1894.t1 ID=Gcaud1894.t1|Name=Gcaud1894.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MRGDRELRGKLHAFDQHLNMILGDVEETVTTTDVDPETFEELLKTSKLWS
ASAATTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNG
QQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPN
PQFDMAPSLSDTPPLSPLSSYDQAPANDFANDPPQLPPFLGERYLKPLPD
DMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGE
CDPVRSFSHNARHYGKIINTVFVTSSNQHA*

spliced messenger RNA

>Gcaud1894.t1 ID=Gcaud1894.t1|Name=Gcaud1894.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:1708..3326- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGCGACCGAGAGTTGCGTGGTAAACTACACGCGTTTGATCAACA
TCTCAACATGATACTCGGAGATGTAGAAGAGACAGTCACCACGACGGATG
TAGATCCAGAAACCTTCGAAGAGCTACTGAAAACGTCCAAACTTTGGTCA
GCTTCGGCCGCCACCACTGCCTCCGATGATGCGCTTGACGAAGACGACCT
TGTTCCTACCATGTTTTACTGGAATTTCGGCGGCTGCGAAGTGCATGTGG
CAGGCGACTGGGACAATTGGGCAACGAAAACCCCTATGAGCAAGAATGGC
CAGCAACACATCTCCCTTGTATATATCCCCTGCGGACAACATCAGTTCAA
GTATTATGTTGATCACACTTGGCAATGTGCCCCTAATCTTCCAACCTGCA
CTGACTCTCTGGGAAACAAAAACAACCTAGTAACAGTAGCACGACCAAAT
CCCCAGTTCGATATGGCTCCCTCCTTGTCCGACACACCTCCGCTCTCTCC
TCTTTCATCTTATGACCAGGCCCCAGCAAATGATTTTGCAAATGATCCCC
CACAGCTCCCCCCCTTCCTAGGAGAACGATATCTCAAGCCGCTTCCAGAT
GATATGAGTCCTAGTATTGCAGCAGCTGCACAGACTCCCTCCTGCTCCCG
CACCTGGTGCGATGCCAAGCAACTCCGATCCAAGTACTCTCCGCGACCAT
TCTTCTCTCATGTGACCGTAGACCATCTCTACGTCGCTCGTTCTGGCGAA
TGTGATCCAGTTCGCTCGTTCTCTCACAACGCTCGGCATTATGGAAAGAT
CATCAACACCGTGTTCGTAACGTCCTCAAATCAACATGCCTGA

protein sequence of Gcaud1894.t1

>Gcaud1894.t1 ID=Gcaud1894.t1|Name=Gcaud1894.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MRGDRELRGKLHAFDQHLNMILGDVEETVTTTDVDPETFEELLKTSKLWS
ASAATTASDDALDEDDLVPTMFYWNFGGCEVHVAGDWDNWATKTPMSKNG
QQHISLVYIPCGQHQFKYYVDHTWQCAPNLPTCTDSLGNKNNLVTVARPN
PQFDMAPSLSDTPPLSPLSSYDQAPANDFANDPPQLPPFLGERYLKPLPD
DMSPSIAAAAQTPSCSRTWCDAKQLRSKYSPRPFFSHVTVDHLYVARSGE
CDPVRSFSHNARHYGKIINTVFVTSSNQHA*

mRNA from alignment at NODE_807_length_17687_cov_4.345135:1708..3326-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1894.t1 ID=Gcaud1894.t1|Name=Gcaud1894.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1619bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:1708..3326- (Gracilaria caudata M_176_S67 male)
ATGCGCGGCGACCGAGAGTTGCGTGGTAAACTACACGTAAGTAGACTTCG
AGCAACTTAAGTTTGTACGGTGCAGCGATTAGCACCCTTTGACTGACATT
TCGAGCTGTGAGATTTTGTGGTCCAGGCGTTTGATCAACATCTCAACATG
ATACTCGGAGATGTAGAAGAGACAGTCACCACGACGGATGTAGATCCAGA
AACCTTCGAAGAGCTACTGAAAACGTCCAAACGTCTGATTCCGATGCTGT
TTGTTCGCGGAGATTGCGTAATTCTGATATCACCGCCGCTGCGAACATCC
TGAGCAGAAATGAGAGCTCCTAGTGTGCTTAAATGAGGTCGTTGCTGGGA
GAGCGTTGCAAAACATAAGCGCTGAGCAAACCCTATAGAGAGAAAAGGAT
AAAACGGTAGCCCCATAAAGTTTCGATTCTGAGTTCCCGAAAATGTAACG
CGGATCCAGTGCAGTGCACGTTAGCCGCGTGTTTCCGTTGTAGATATCTA
GCCCAGATATGTGCCGTCATACGCACGCACGGCTCAACTCCAATTTGCCG
CGCGTCACCGCCCGCGTGCACGCCCCACCTCAGGCTCCTCAACAACTATT
CTTATCGCGTCCGCTCGGTCGTTTCTTTCTCGTGCATGTGCTCCCGCGGC
ATCCCAATGGGCGCTTCCTCCAGTCGCCACTACGCACCCTTAACCATCGA
CCGTCCCCGCGCCTCCCCCTGCTCCTCACTCGGTAGCAGCGCAGACGCCT
GTTCTCCTCCCTGCGACGACGCCCATCTTTCTACCTGCCATCACCAACAG
CCGTCCTCCCTCTGCACCAGGCACACGGCAGTCGCCTGCGCAACTCACTG
CACAGACGCCCCAATCAGCTCGCCAGATTCCCGGCTCGCTCCACGACATG
ACACATGCAACAATCTAGTTTGGTCAGCTTCGGCCGCCACCACTGCCTCC
GATGATGCGCTTGACGAAGACGACCTTGTTCCTACCATGTTTTACTGGAA
TTTCGGCGGCTGCGAAGTGCATGTGGCAGGCGACTGGGACAATTGGGCAA
CGAAAACCCCTATGAGCAAGAATGGCCAGCAACACATCTCCCTTGTATAT
ATCCCCTGCGGACAACATCAGTTCAAGTATTATGTTGATCACACTTGGCA
ATGTGCCCCTAATCTTCCAACCTGCACTGACTCTCTGGGAAACAAAAACA
ACCTAGTAACAGTAGCACGACCAAATCCCCAGTTCGATATGGCTCCCTCC
TTGTCCGACACACCTCCGCTCTCTCCTCTTTCATCTTATGACCAGGCCCC
AGCAAATGATTTTGCAAATGATCCCCCACAGCTCCCCCCCTTCCTAGGAG
AACGATATCTCAAGCCGCTTCCAGATGATATGAGTCCTAGTATTGCAGCA
GCTGCACAGACTCCCTCCTGCTCCCGCACCTGGTGCGATGCCAAGCAACT
CCGATCCAAGTACTCTCCGCGACCATTCTTCTCTCATGTGACCGTAGACC
ATCTCTACGTCGCTCGTTCTGGCGAATGTGATCCAGTTCGCTCGTTCTCT
CACAACGCTCGGCATTATGGAAAGATCATCAACACCGTGTTCGTAACGTC
CTCAAATCAACATGCCTGA

Coding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:1708..3326-

>Gcaud1894.t1 ID=Gcaud1894.t1|Name=Gcaud1894.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:1708..3326- (Gracilaria caudata M_176_S67 male)
ATGCGCGGCGACCGAGAGTTGCGTGGTAAACTACACGCGTTTGATCAACA
TCTCAACATGATACTCGGAGATGTAGAAGAGACAGTCACCACGACGGATG
TAGATCCAGAAACCTTCGAAGAGCTACTGAAAACGTCCAAACTTTGGTCA
GCTTCGGCCGCCACCACTGCCTCCGATGATGCGCTTGACGAAGACGACCT
TGTTCCTACCATGTTTTACTGGAATTTCGGCGGCTGCGAAGTGCATGTGG
CAGGCGACTGGGACAATTGGGCAACGAAAACCCCTATGAGCAAGAATGGC
CAGCAACACATCTCCCTTGTATATATCCCCTGCGGACAACATCAGTTCAA
GTATTATGTTGATCACACTTGGCAATGTGCCCCTAATCTTCCAACCTGCA
CTGACTCTCTGGGAAACAAAAACAACCTAGTAACAGTAGCACGACCAAAT
CCCCAGTTCGATATGGCTCCCTCCTTGTCCGACACACCTCCGCTCTCTCC
TCTTTCATCTTATGACCAGGCCCCAGCAAATGATTTTGCAAATGATCCCC
CACAGCTCCCCCCCTTCCTAGGAGAACGATATCTCAAGCCGCTTCCAGAT
GATATGAGTCCTAGTATTGCAGCAGCTGCACAGACTCCCTCCTGCTCCCG
CACCTGGTGCGATGCCAAGCAACTCCGATCCAAGTACTCTCCGCGACCAT
TCTTCTCTCATGTGACCGTAGACCATCTCTACGTCGCTCGTTCTGGCGAA
TGTGATCCAGTTCGCTCGTTCTCTCACAACGCTCGGCATTATGGAAAGAT
CATCAACACCGTGTTCGTAACGTCCTCAAATCAACATGCCTGA