Gcaud1898.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1898.t1
Unique Name	Gcaud1898.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_807_length_17687_cov_4.345135	contig	NODE_807_length_17687_cov_4.345135:7388..8188 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8364.ENSXETP00000031643
Preferred name	ALKBH8
PFAMs	2OG-FeII_Oxy_2,DUF1891,Methyltransf_11,RRM_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10770
GOs	GO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016604,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0055114,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
Evalue	3.25e-53
EggNOG OGs	COG0500@1\|root,COG3145@1\|root,KOG1331@2759\|Eukaryota,KOG4176@2759\|Eukaryota,38HZD@33154\|Opisthokonta,3BHFK@33208\|Metazoa,3CS46@33213\|Bilateria,486C0@7711\|Chordata,49265@7742\|Vertebrata
EC	2.1.1.229
Description	alkB, alkylation repair homolog 8 (E. coli)
COG category	A
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1898	Gcaud1898	Gracilaria caudata M_176_S67 male	gene	NODE_807_length_17687_cov_4.345135 7388..8188 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1898.t1.start1	Gcaud1898.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_807_length_17687_cov_4.345135 7388..7390 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1898.t1.CDS1	Gcaud1898.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_807_length_17687_cov_4.345135 7388..8188 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1898.t1.exon1	Gcaud1898.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_807_length_17687_cov_4.345135 7388..8188 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1898.t1.stop1	Gcaud1898.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_807_length_17687_cov_4.345135 8186..8188 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1898.t1	Gcaud1898.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_807_length_17687_cov_4.345135 7388..8188 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+
coding sequence from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+

mRNA sequence

>Gcaud1898.t1 ID=Gcaud1898.t1|Name=Gcaud1898.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
MAPQSSSNRSAAPTSAPAPPEGSAALYEKHHVNDVYDTIATHFASTRHAP
WPRVNEFLDSLPPLSLIADVGCGNGKYISVVQHSASVHHVVGIDMCAPLL
RYAQQNFKPAPSTCDLAVANGLRLPFEDGSFDAAINIAVVHHFATSERRV
QALAETVRILRLNGKALVYVWALERPNVIKSKRGNTSKMLNRRFDTQDVF
VPWHMRYKKEGATDDRILDDWNDVHQRYYHVYRQGELERELSQVPHVHVL
KSYYDHQNWCVLLEKR*

spliced messenger RNA

>Gcaud1898.t1 ID=Gcaud1898.t1|Name=Gcaud1898.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGCAGTCCTCCTCCAACCGCTCCGCCGCCCCGACAAGTGCCCC
TGCTCCACCAGAAGGCAGTGCCGCTCTCTACGAAAAACACCATGTCAATG
ATGTATACGACACGATAGCTACCCACTTCGCATCCACCCGACATGCACCA
TGGCCCCGTGTGAATGAGTTCCTAGATTCCTTGCCGCCGCTCTCTCTCAT
TGCTGATGTGGGATGTGGAAATGGCAAGTATATCTCTGTCGTGCAGCACT
CTGCGTCCGTCCATCACGTCGTCGGTATTGATATGTGTGCACCGCTTCTG
CGGTATGCCCAGCAAAACTTTAAACCCGCCCCATCCACCTGTGATCTAGC
CGTTGCCAATGGCTTACGTCTCCCCTTCGAGGATGGCTCATTCGACGCTG
CCATCAACATAGCGGTTGTGCACCATTTTGCGACGTCTGAACGTCGCGTT
CAGGCTCTAGCTGAGACAGTACGAATCTTGCGTCTGAACGGAAAGGCTTT
GGTCTACGTATGGGCTCTAGAGCGACCCAACGTTATCAAGTCTAAGCGAG
GAAACACTTCCAAAATGCTCAACAGGCGATTTGACACCCAGGATGTATTC
GTTCCGTGGCATATGAGGTACAAAAAGGAAGGTGCAACCGATGACCGCAT
TTTGGATGACTGGAACGATGTGCATCAACGCTACTACCACGTTTATCGCC
AAGGTGAGCTTGAACGCGAGTTGAGTCAAGTGCCTCACGTCCACGTTTTA
AAATCCTACTACGATCATCAAAACTGGTGCGTTCTGCTCGAGAAGCGGTA
A

protein sequence of Gcaud1898.t1

>Gcaud1898.t1 ID=Gcaud1898.t1|Name=Gcaud1898.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MAPQSSSNRSAAPTSAPAPPEGSAALYEKHHVNDVYDTIATHFASTRHAP
WPRVNEFLDSLPPLSLIADVGCGNGKYISVVQHSASVHHVVGIDMCAPLL
RYAQQNFKPAPSTCDLAVANGLRLPFEDGSFDAAINIAVVHHFATSERRV
QALAETVRILRLNGKALVYVWALERPNVIKSKRGNTSKMLNRRFDTQDVF
VPWHMRYKKEGATDDRILDDWNDVHQRYYHVYRQGELERELSQVPHVHVL
KSYYDHQNWCVLLEKR*

mRNA from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1898.t1 ID=Gcaud1898.t1|Name=Gcaud1898.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+ (Gracilaria caudata M_176_S67 male)
ATGGCACCGCAGTCCTCCTCCAACCGCTCCGCCGCCCCGACAAGTGCCCC
TGCTCCACCAGAAGGCAGTGCCGCTCTCTACGAAAAACACCATGTCAATG
ATGTATACGACACGATAGCTACCCACTTCGCATCCACCCGACATGCACCA
TGGCCCCGTGTGAATGAGTTCCTAGATTCCTTGCCGCCGCTCTCTCTCAT
TGCTGATGTGGGATGTGGAAATGGCAAGTATATCTCTGTCGTGCAGCACT
CTGCGTCCGTCCATCACGTCGTCGGTATTGATATGTGTGCACCGCTTCTG
CGGTATGCCCAGCAAAACTTTAAACCCGCCCCATCCACCTGTGATCTAGC
CGTTGCCAATGGCTTACGTCTCCCCTTCGAGGATGGCTCATTCGACGCTG
CCATCAACATAGCGGTTGTGCACCATTTTGCGACGTCTGAACGTCGCGTT
CAGGCTCTAGCTGAGACAGTACGAATCTTGCGTCTGAACGGAAAGGCTTT
GGTCTACGTATGGGCTCTAGAGCGACCCAACGTTATCAAGTCTAAGCGAG
GAAACACTTCCAAAATGCTCAACAGGCGATTTGACACCCAGGATGTATTC
GTTCCGTGGCATATGAGGTACAAAAAGGAAGGTGCAACCGATGACCGCAT
TTTGGATGACTGGAACGATGTGCATCAACGCTACTACCACGTTTATCGCC
AAGGTGAGCTTGAACGCGAGTTGAGTCAAGTGCCTCACGTCCACGTTTTA
AAATCCTACTACGATCATCAAAACTGGTGCGTTCTGCTCGAGAAGCGGTA
A

Coding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+

>Gcaud1898.t1 ID=Gcaud1898.t1|Name=Gcaud1898.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:7388..8188+ (Gracilaria caudata M_176_S67 male)
ATGGCACCGCAGTCCTCCTCCAACCGCTCCGCCGCCCCGACAAGTGCCCC
TGCTCCACCAGAAGGCAGTGCCGCTCTCTACGAAAAACACCATGTCAATG
ATGTATACGACACGATAGCTACCCACTTCGCATCCACCCGACATGCACCA
TGGCCCCGTGTGAATGAGTTCCTAGATTCCTTGCCGCCGCTCTCTCTCAT
TGCTGATGTGGGATGTGGAAATGGCAAGTATATCTCTGTCGTGCAGCACT
CTGCGTCCGTCCATCACGTCGTCGGTATTGATATGTGTGCACCGCTTCTG
CGGTATGCCCAGCAAAACTTTAAACCCGCCCCATCCACCTGTGATCTAGC
CGTTGCCAATGGCTTACGTCTCCCCTTCGAGGATGGCTCATTCGACGCTG
CCATCAACATAGCGGTTGTGCACCATTTTGCGACGTCTGAACGTCGCGTT
CAGGCTCTAGCTGAGACAGTACGAATCTTGCGTCTGAACGGAAAGGCTTT
GGTCTACGTATGGGCTCTAGAGCGACCCAACGTTATCAAGTCTAAGCGAG
GAAACACTTCCAAAATGCTCAACAGGCGATTTGACACCCAGGATGTATTC
GTTCCGTGGCATATGAGGTACAAAAAGGAAGGTGCAACCGATGACCGCAT
TTTGGATGACTGGAACGATGTGCATCAACGCTACTACCACGTTTATCGCC
AAGGTGAGCTTGAACGCGAGTTGAGTCAAGTGCCTCACGTCCACGTTTTA
AAATCCTACTACGATCATCAAAACTGGTGCGTTCTGCTCGAGAAGCGGTA
A