Gcaud1946.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1946.t1
Unique NameGcaud1946.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length285
Homology
[Close]
BLAST of Gcaud1946.t1 vs. uniprot
Match: A0A2V3ILT8_9FLOR (Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILT8_9FLOR)

HSP 1 Score: 327 bits (837), Expect = 4.030e-107
Identity = 161/286 (56.29%), Postives = 210/286 (73.43%), Query Frame = 0 
Query:    1 MASFSDRVLLLDWMQPNSIFHFFLPTQ-IRDLKFKEEDRLEEQN-SKSVYMCDRYCARPYTLNQVLRSEHFVIFPQGTTSSAHFLCGHFTKTHPQLPLSKTFANISDSLFHVAPHTFAAIFNAMLKPSPLLHKLLKERSSLLQKPFIGIHARLGAGLGEGGTRFPAKLDPVHIASCLIEPALRVGKDHGVQHYYLATDTVPFRDVFEKVLKRRNPKAHLVRFDDIVPVHTKGCHTNITECYNTMIELVILSKSKHIVAIKSSFSKVAGYIGNVTVDSRGHATQCVE 284
            +ASFS+RVLLLDW+QP  + HFF P+  +  ++F + DR EEQ  + S Y+CD+ C +   L  VL S+HF+I+PQG T+S   L  HF+ THP+LPLSK FAN++D + +V  H  ++ FNAMLKP+  L KLL++R   L++PFIG+HARLGAGLGE G RF +   P  +A C ++ AL  G  HG++ YYLATDTVPFRDVFE VL R  P A L+RFDDI+PVHTKGC  N +EC +TM+EL++LSKS +IVA KSSFS+VAGYIGNVTV+S G   QC++
Sbjct:  150 IASFSNRVLLLDWIQPYPLSHFFSPSSAMPGIEFTDADRREEQQKASSRYICDKQCTKKLHLGHVLGSKHFIIYPQGATTSPQHLVAHFSTTHPRLPLSKVFANLTDVVTNV--HVLSSAFNAMLKPAAPLKKLLEKRKRALKQPFIGVHARLGAGLGETGPRFGSGHSPEQVAKCFVKSALGSGDTHGIRKYYLATDTVPFRDVFENVLLRERPNASLIRFDDIMPVHTKGCKNNASECASTMMELIVLSKSSYIVASKSSFSRVAGYIGNVTVESLGVIKQCMD 433
The following BLAST results are available for this feature:
BLAST of Gcaud1946.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILT8_9FLOR4.030e-10756.29Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11350coord: 133..281
e-value: 6.2E-9
score: 37.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_804_length_17738_cov_4.544908contigNODE_804_length_17738_cov_4.544908:9729..10583 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1946.t1Gcaud1946.t1Gracilaria caudata M_176_S67 malemRNANODE_804_length_17738_cov_4.544908 9729..10583 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1946.t1 ID=Gcaud1946.t1|Name=Gcaud1946.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MASFSDRVLLLDWMQPNSIFHFFLPTQIRDLKFKEEDRLEEQNSKSVYMC
DRYCARPYTLNQVLRSEHFVIFPQGTTSSAHFLCGHFTKTHPQLPLSKTF
ANISDSLFHVAPHTFAAIFNAMLKPSPLLHKLLKERSSLLQKPFIGIHAR
LGAGLGEGGTRFPAKLDPVHIASCLIEPALRVGKDHGVQHYYLATDTVPF
RDVFEKVLKRRNPKAHLVRFDDIVPVHTKGCHTNITECYNTMIELVILSK
SKHIVAIKSSFSKVAGYIGNVTVDSRGHATQCVE*
back to top