Gcaud1946.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1946.t1
Unique Name	Gcaud1946.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_804_length_17738_cov_4.544908	contig	NODE_804_length_17738_cov_4.544908:9729..10583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1946	Gcaud1946	Gracilaria caudata M_176_S67 male	gene	NODE_804_length_17738_cov_4.544908 9729..10583 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1946.t1.stop1	Gcaud1946.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_804_length_17738_cov_4.544908 9729..9731 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1946.t1.CDS1	Gcaud1946.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_804_length_17738_cov_4.544908 9729..10583 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1946.t1.exon1	Gcaud1946.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_804_length_17738_cov_4.544908 9729..10583 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1946.t1.start1	Gcaud1946.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_804_length_17738_cov_4.544908 10581..10583 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1946.t1	Gcaud1946.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_804_length_17738_cov_4.544908 9729..10583 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_804_length_17738_cov_4.544908:9729..10583-
coding sequence from alignment at NODE_804_length_17738_cov_4.544908:9729..10583-

mRNA sequence

>Gcaud1946.t1 ID=Gcaud1946.t1|Name=Gcaud1946.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp
MASFSDRVLLLDWMQPNSIFHFFLPTQIRDLKFKEEDRLEEQNSKSVYMC
DRYCARPYTLNQVLRSEHFVIFPQGTTSSAHFLCGHFTKTHPQLPLSKTF
ANISDSLFHVAPHTFAAIFNAMLKPSPLLHKLLKERSSLLQKPFIGIHAR
LGAGLGEGGTRFPAKLDPVHIASCLIEPALRVGKDHGVQHYYLATDTVPF
RDVFEKVLKRRNPKAHLVRFDDIVPVHTKGCHTNITECYNTMIELVILSK
SKHIVAIKSSFSKVAGYIGNVTVDSRGHATQCVE*

spliced messenger RNA

>Gcaud1946.t1 ID=Gcaud1946.t1|Name=Gcaud1946.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:9729..10583- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTTTTTCAGATCGAGTGCTGCTTCTGGACTGGATGCAGCCAAA
CTCAATCTTTCACTTCTTCTTACCAACCCAGATTCGCGATTTGAAGTTCA
AAGAAGAGGACCGTCTTGAGGAACAAAACTCCAAGTCCGTTTACATGTGC
GACCGCTACTGTGCGAGACCTTACACTCTTAATCAGGTTTTGCGTTCTGA
ACATTTTGTCATCTTCCCACAAGGCACCACTTCCAGCGCCCACTTTCTTT
GCGGACACTTCACCAAGACACATCCACAACTACCGCTTTCGAAAACGTTT
GCGAACATATCGGATTCACTTTTCCATGTAGCGCCACACACTTTTGCCGC
CATTTTTAACGCCATGCTGAAACCGTCGCCGCTCCTGCACAAGCTGCTCA
AGGAAAGGAGTTCTCTATTGCAAAAGCCTTTCATCGGAATTCATGCCCGG
TTAGGAGCAGGGCTTGGGGAAGGTGGCACTCGATTCCCTGCAAAACTAGA
CCCGGTTCATATTGCATCCTGCTTGATTGAACCTGCCTTAAGAGTTGGCA
AGGATCACGGCGTACAGCACTATTACCTTGCCACTGATACCGTTCCTTTC
CGTGATGTGTTCGAGAAAGTGCTAAAAAGGCGGAACCCCAAGGCCCATTT
GGTGCGCTTCGACGATATTGTACCGGTTCACACAAAGGGATGTCATACGA
ATATTACAGAATGCTATAACACCATGATCGAGCTCGTGATATTGTCCAAG
AGCAAGCATATTGTTGCTATAAAGAGCAGTTTCTCGAAAGTCGCTGGTTA
CATAGGGAATGTCACGGTCGACTCTCGAGGGCATGCAACTCAATGTGTGG
AATAG

protein sequence of Gcaud1946.t1

>Gcaud1946.t1 ID=Gcaud1946.t1|Name=Gcaud1946.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MASFSDRVLLLDWMQPNSIFHFFLPTQIRDLKFKEEDRLEEQNSKSVYMC
DRYCARPYTLNQVLRSEHFVIFPQGTTSSAHFLCGHFTKTHPQLPLSKTF
ANISDSLFHVAPHTFAAIFNAMLKPSPLLHKLLKERSSLLQKPFIGIHAR
LGAGLGEGGTRFPAKLDPVHIASCLIEPALRVGKDHGVQHYYLATDTVPF
RDVFEKVLKRRNPKAHLVRFDDIVPVHTKGCHTNITECYNTMIELVILSK
SKHIVAIKSSFSKVAGYIGNVTVDSRGHATQCVE*

mRNA from alignment at NODE_804_length_17738_cov_4.544908:9729..10583-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1946.t1 ID=Gcaud1946.t1|Name=Gcaud1946.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:9729..10583- (Gracilaria caudata M_176_S67 male)
ATGGCATCTTTTTCAGATCGAGTGCTGCTTCTGGACTGGATGCAGCCAAA
CTCAATCTTTCACTTCTTCTTACCAACCCAGATTCGCGATTTGAAGTTCA
AAGAAGAGGACCGTCTTGAGGAACAAAACTCCAAGTCCGTTTACATGTGC
GACCGCTACTGTGCGAGACCTTACACTCTTAATCAGGTTTTGCGTTCTGA
ACATTTTGTCATCTTCCCACAAGGCACCACTTCCAGCGCCCACTTTCTTT
GCGGACACTTCACCAAGACACATCCACAACTACCGCTTTCGAAAACGTTT
GCGAACATATCGGATTCACTTTTCCATGTAGCGCCACACACTTTTGCCGC
CATTTTTAACGCCATGCTGAAACCGTCGCCGCTCCTGCACAAGCTGCTCA
AGGAAAGGAGTTCTCTATTGCAAAAGCCTTTCATCGGAATTCATGCCCGG
TTAGGAGCAGGGCTTGGGGAAGGTGGCACTCGATTCCCTGCAAAACTAGA
CCCGGTTCATATTGCATCCTGCTTGATTGAACCTGCCTTAAGAGTTGGCA
AGGATCACGGCGTACAGCACTATTACCTTGCCACTGATACCGTTCCTTTC
CGTGATGTGTTCGAGAAAGTGCTAAAAAGGCGGAACCCCAAGGCCCATTT
GGTGCGCTTCGACGATATTGTACCGGTTCACACAAAGGGATGTCATACGA
ATATTACAGAATGCTATAACACCATGATCGAGCTCGTGATATTGTCCAAG
AGCAAGCATATTGTTGCTATAAAGAGCAGTTTCTCGAAAGTCGCTGGTTA
CATAGGGAATGTCACGGTCGACTCTCGAGGGCATGCAACTCAATGTGTGG
AATAG

Coding sequence (CDS) from alignment at NODE_804_length_17738_cov_4.544908:9729..10583-

>Gcaud1946.t1 ID=Gcaud1946.t1|Name=Gcaud1946.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=855bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:9729..10583- (Gracilaria caudata M_176_S67 male)
ATGGCATCTTTTTCAGATCGAGTGCTGCTTCTGGACTGGATGCAGCCAAA
CTCAATCTTTCACTTCTTCTTACCAACCCAGATTCGCGATTTGAAGTTCA
AAGAAGAGGACCGTCTTGAGGAACAAAACTCCAAGTCCGTTTACATGTGC
GACCGCTACTGTGCGAGACCTTACACTCTTAATCAGGTTTTGCGTTCTGA
ACATTTTGTCATCTTCCCACAAGGCACCACTTCCAGCGCCCACTTTCTTT
GCGGACACTTCACCAAGACACATCCACAACTACCGCTTTCGAAAACGTTT
GCGAACATATCGGATTCACTTTTCCATGTAGCGCCACACACTTTTGCCGC
CATTTTTAACGCCATGCTGAAACCGTCGCCGCTCCTGCACAAGCTGCTCA
AGGAAAGGAGTTCTCTATTGCAAAAGCCTTTCATCGGAATTCATGCCCGG
TTAGGAGCAGGGCTTGGGGAAGGTGGCACTCGATTCCCTGCAAAACTAGA
CCCGGTTCATATTGCATCCTGCTTGATTGAACCTGCCTTAAGAGTTGGCA
AGGATCACGGCGTACAGCACTATTACCTTGCCACTGATACCGTTCCTTTC
CGTGATGTGTTCGAGAAAGTGCTAAAAAGGCGGAACCCCAAGGCCCATTT
GGTGCGCTTCGACGATATTGTACCGGTTCACACAAAGGGATGTCATACGA
ATATTACAGAATGCTATAACACCATGATCGAGCTCGTGATATTGTCCAAG
AGCAAGCATATTGTTGCTATAAAGAGCAGTTTCTCGAAAGTCGCTGGTTA
CATAGGGAATGTCACGGTCGACTCTCGAGGGCATGCAACTCAATGTGTGG
AATAG