Gcaud1755.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1755.t1
Unique NameGcaud1755.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1193_length_12810_cov_3.289960contigNODE_1193_length_12810_cov_3.289960:8282..9010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707781.1
PFAMsFKBP_C,TPR_1,TPR_19,TPR_2
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K09571
KEGG Pathwayko04915,map04915
Evalue3.68e-46
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
EC5.2.1.8
DescriptionFK506 binding
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1755Gcaud1755Gracilaria caudata M_176_S67 malegeneNODE_1193_length_12810_cov_3.289960 8282..9010 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1755.t1.stop1Gcaud1755.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1193_length_12810_cov_3.289960 8282..8284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1755.t1.CDS1Gcaud1755.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1193_length_12810_cov_3.289960 8282..9010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1755.t1.exon1Gcaud1755.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1193_length_12810_cov_3.289960 8282..9010 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1755.t1.start1Gcaud1755.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1193_length_12810_cov_3.289960 9008..9010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1755.t1Gcaud1755.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1193_length_12810_cov_3.289960 8282..9010 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1755.t1 ID=Gcaud1755.t1|Name=Gcaud1755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MADTEAREREPRDEEPADLGELDYDYSSVHDKIAAGLREKEKGNRLFAQG
KYEQAWKQYDRCFVHIFTSKEEWAAIGSDARRAINRFKMPCHLNRGLCRL
RKNELNDALWDFSEALRIDDGNAKGLYRRAITLVRMVHADMAKEGTDELW
DLDVAEQRVQMAKNDLYKAVRLVPNDLDVRKAIDELKDTRQKLAEHRKRY
RQKQRELYSTFVTNLDRENQRIADAQDSLCSDMPNLERVYID*
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spliced messenger RNA

>Gcaud1755.t1 ID=Gcaud1755.t1|Name=Gcaud1755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:8282..9010- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACACGGAAGCGCGCGAGCGCGAGCCACGCGACGAAGAGCCCGC
AGACCTTGGCGAACTGGACTACGACTACAGCTCCGTGCACGACAAGATCG
CGGCCGGGCTGCGCGAGAAGGAGAAGGGCAATCGTCTGTTCGCGCAGGGC
AAGTACGAGCAAGCGTGGAAGCAATACGACCGCTGTTTTGTGCACATCTT
CACGTCCAAGGAGGAATGGGCCGCCATTGGATCCGACGCGCGACGCGCCA
TCAACCGATTCAAGATGCCGTGTCACCTCAACCGCGGTCTGTGCCGCCTG
CGGAAGAACGAGTTGAACGACGCGCTGTGGGATTTCTCCGAGGCGCTTCG
AATCGACGATGGCAACGCAAAGGGGCTGTACCGCAGGGCCATCACGCTGG
TGCGCATGGTGCACGCCGACATGGCCAAAGAAGGTACCGACGAGCTTTGG
GACTTAGATGTGGCCGAGCAGCGCGTACAAATGGCCAAGAATGACCTGTA
CAAGGCTGTGCGCCTCGTTCCGAATGATCTTGACGTCAGAAAAGCCATCG
ACGAGCTCAAGGACACGCGACAAAAGCTCGCCGAGCACCGCAAGCGCTAC
CGACAAAAACAGCGCGAGCTGTATTCCACGTTTGTGACCAATTTGGATCG
GGAGAACCAGAGGATCGCGGACGCGCAGGACAGTCTGTGCTCTGACATGC
CCAACCTGGAACGCGTTTACATCGACTGA
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protein sequence of Gcaud1755.t1

>Gcaud1755.t1 ID=Gcaud1755.t1|Name=Gcaud1755.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MADTEAREREPRDEEPADLGELDYDYSSVHDKIAAGLREKEKGNRLFAQG
KYEQAWKQYDRCFVHIFTSKEEWAAIGSDARRAINRFKMPCHLNRGLCRL
RKNELNDALWDFSEALRIDDGNAKGLYRRAITLVRMVHADMAKEGTDELW
DLDVAEQRVQMAKNDLYKAVRLVPNDLDVRKAIDELKDTRQKLAEHRKRY
RQKQRELYSTFVTNLDRENQRIADAQDSLCSDMPNLERVYID*
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mRNA from alignment at NODE_1193_length_12810_cov_3.289960:8282..9010-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1755.t1 ID=Gcaud1755.t1|Name=Gcaud1755.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:8282..9010- (Gracilaria caudata M_176_S67 male)
ATGGCCGACACGGAAGCGCGCGAGCGCGAGCCACGCGACGAAGAGCCCGC
AGACCTTGGCGAACTGGACTACGACTACAGCTCCGTGCACGACAAGATCG
CGGCCGGGCTGCGCGAGAAGGAGAAGGGCAATCGTCTGTTCGCGCAGGGC
AAGTACGAGCAAGCGTGGAAGCAATACGACCGCTGTTTTGTGCACATCTT
CACGTCCAAGGAGGAATGGGCCGCCATTGGATCCGACGCGCGACGCGCCA
TCAACCGATTCAAGATGCCGTGTCACCTCAACCGCGGTCTGTGCCGCCTG
CGGAAGAACGAGTTGAACGACGCGCTGTGGGATTTCTCCGAGGCGCTTCG
AATCGACGATGGCAACGCAAAGGGGCTGTACCGCAGGGCCATCACGCTGG
TGCGCATGGTGCACGCCGACATGGCCAAAGAAGGTACCGACGAGCTTTGG
GACTTAGATGTGGCCGAGCAGCGCGTACAAATGGCCAAGAATGACCTGTA
CAAGGCTGTGCGCCTCGTTCCGAATGATCTTGACGTCAGAAAAGCCATCG
ACGAGCTCAAGGACACGCGACAAAAGCTCGCCGAGCACCGCAAGCGCTAC
CGACAAAAACAGCGCGAGCTGTATTCCACGTTTGTGACCAATTTGGATCG
GGAGAACCAGAGGATCGCGGACGCGCAGGACAGTCTGTGCTCTGACATGC
CCAACCTGGAACGCGTTTACATCGACTGA
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Coding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:8282..9010-

>Gcaud1755.t1 ID=Gcaud1755.t1|Name=Gcaud1755.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=729bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:8282..9010- (Gracilaria caudata M_176_S67 male)
ATGGCCGACACGGAAGCGCGCGAGCGCGAGCCACGCGACGAAGAGCCCGC
AGACCTTGGCGAACTGGACTACGACTACAGCTCCGTGCACGACAAGATCG
CGGCCGGGCTGCGCGAGAAGGAGAAGGGCAATCGTCTGTTCGCGCAGGGC
AAGTACGAGCAAGCGTGGAAGCAATACGACCGCTGTTTTGTGCACATCTT
CACGTCCAAGGAGGAATGGGCCGCCATTGGATCCGACGCGCGACGCGCCA
TCAACCGATTCAAGATGCCGTGTCACCTCAACCGCGGTCTGTGCCGCCTG
CGGAAGAACGAGTTGAACGACGCGCTGTGGGATTTCTCCGAGGCGCTTCG
AATCGACGATGGCAACGCAAAGGGGCTGTACCGCAGGGCCATCACGCTGG
TGCGCATGGTGCACGCCGACATGGCCAAAGAAGGTACCGACGAGCTTTGG
GACTTAGATGTGGCCGAGCAGCGCGTACAAATGGCCAAGAATGACCTGTA
CAAGGCTGTGCGCCTCGTTCCGAATGATCTTGACGTCAGAAAAGCCATCG
ACGAGCTCAAGGACACGCGACAAAAGCTCGCCGAGCACCGCAAGCGCTAC
CGACAAAAACAGCGCGAGCTGTATTCCACGTTTGTGACCAATTTGGATCG
GGAGAACCAGAGGATCGCGGACGCGCAGGACAGTCTGTGCTCTGACATGC
CCAACCTGGAACGCGTTTACATCGACTGA
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