Gcaud1963.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1963.t2
Unique NameGcaud1963.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_802_length_17758_cov_4.100526contigNODE_802_length_17758_cov_4.100526:10889..13770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN13298
PFAMsEnolase_C,Enolase_N
Max annot lvl35493|Streptophyta
KEGG rclassRC00349
KEGG koko:K01689
KEGG ReactionR00658
KEGG Pathwayko00010,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04066,map00010,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04066
KEGG ModuleM00001,M00002,M00003,M00346,M00394
GOsGO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004634,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005829,GO:0005886,GO:0005911,GO:0006950,GO:0006970,GO:0008150,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016829,GO:0016835,GO:0016836,GO:0030054,GO:0031967,GO:0031975,GO:0033993,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0050896,GO:0055044,GO:0071944,GO:0097159,GO:0097305,GO:1901363,GO:1901700
Evalue3.21e-117
EggNOG OGsCOG0148@1|root,KOG2670@2759|Eukaryota,37JMA@33090|Viridiplantae,3G9BD@35493|Streptophyta
EC4.2.1.11
Descriptioneno2,los2
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1963Gcaud1963Gracilaria caudata M_176_S67 malegeneNODE_802_length_17758_cov_4.100526 10889..13770 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t2.stop1Gcaud1963.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_802_length_17758_cov_4.100526 10889..10891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t2.CDS1Gcaud1963.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 10889..11362 -
Gcaud1963.t2.CDS2Gcaud1963.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11457..11538 -
Gcaud1963.t2.CDS3Gcaud1963.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11644..11765 -
Gcaud1963.t2.CDS4Gcaud1963.t2.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11838..11874 -
Gcaud1963.t2.CDS5Gcaud1963.t2.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11966..11990 -
Gcaud1963.t2.CDS6Gcaud1963.t2.CDS6Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 13080..13770 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t2.exon1Gcaud1963.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 10889..11362 -
Gcaud1963.t2.exon2Gcaud1963.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11457..11538 -
Gcaud1963.t2.exon3Gcaud1963.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11644..11765 -
Gcaud1963.t2.exon4Gcaud1963.t2.exon4Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11838..11874 -
Gcaud1963.t2.exon5Gcaud1963.t2.exon5Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11966..11990 -
Gcaud1963.t2.exon6Gcaud1963.t2.exon6Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 13080..13770 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t2.intron1Gcaud1963.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11363..11456 -
Gcaud1963.t2.intron2Gcaud1963.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11539..11643 -
Gcaud1963.t2.intron3Gcaud1963.t2.intron3Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11766..11837 -
Gcaud1963.t2.intron4Gcaud1963.t2.intron4Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11875..11965 -
Gcaud1963.t2.intron5Gcaud1963.t2.intron5Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11991..13079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t2.start1Gcaud1963.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_802_length_17758_cov_4.100526 13768..13770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t2Gcaud1963.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_802_length_17758_cov_4.100526 10889..13770 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1963.t2 ID=Gcaud1963.t2|Name=Gcaud1963.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=477bp
LDATSVGDEGGFAPNIQDNTEGLRLLEEAIEMAGYTGKVKVGMDVAASEF
WKDDKKMYDLDFKTADNDGSQCLTGEQLGELYKGFVADFPMVSIEDPFDQ
DDWESYAALTAAVGENVQIVGDDLLVTNPTRIQTGITKKACNALLLKVNQ
IGSITEAIQACKMSRDAGWGVMVSHRSGETEDTFIADLCVGLGTAQIKTG
APCRSERLAKYNQLLRIEEELGAEAIYAGSTNAVMNPEYDYLYKNLLIGD
SVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLL
RFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSS
YYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLT
SKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQ
PTKTPNGGTVKVSAKDEEVSASSGCC*
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spliced messenger RNA

>Gcaud1963.t2 ID=Gcaud1963.t2|Name=Gcaud1963.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..13770- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGATGCTACTAGCGTTGGTGATGAAGGTGGCTTTGCTCCAAATATTCA
GGATAATACTGAAGGTCTTCGGTTATTGGAAGAGGCTATCGAAATGGCCG
GATACACTGGAAAGGTGAAGGTCGGTATGGATGTCGCTGCCAGTGAATTT
TGGAAGGACGATAAGAAGATGTACGATCTTGATTTCAAGACTGCAGATAA
TGACGGCTCTCAATGCCTAACTGGTGAGCAACTCGGCGAACTGTACAAGG
GCTTCGTCGCTGATTTCCCAATGGTTTCCATCGAAGATCCTTTCGATCAA
GATGATTGGGAATCTTACGCGGCGCTTACTGCAGCGGTTGGTGAGAATGT
TCAGATCGTTGGCGATGATCTTCTTGTAACCAATCCAACTCGCATTCAGA
CTGGTATCACAAAGAAGGCTTGCAATGCTCTGCTGCTCAAGGTAAATCAG
ATTGGATCCATCACTGAAGCTATTCAAGCGTGCAAGATGTCGCGCGATGC
GGGATGGGGCGTCATGGTTTCCCATCGATCGGGTGAAACAGAAGATACTT
TCATTGCTGATTTGTGTGTCGGACTTGGCACAGCGCAGATTAAGACCGGT
GCCCCTTGCCGCTCCGAGCGACTTGCCAAATACAACCAGCTTTTGCGAAT
TGAAGAGGAGCTTGGCGCTGAAGCTATCTACGCGGGGTCCACGAACGCCG
TCATGAATCCGGAATACGACTATTTGTACAAGAATCTTCTCATCGGTGAC
TCGGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTTCT
AACTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGATT
CATTGCGTTTCTTTTGCTCACAGGGTGTTGGGAAGTCATGTCTCCTACTG
CGTTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAATCGGTGT
TGATTTCAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTTC
AGATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTCA
TACTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATCA
AGAGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTTG
CGTCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGACA
TCGAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTTT
GGGCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAGG
CGGCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCAA
CCAACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATGA
AGAAGTCTCGGCATCATCTGGATGCTGCTAA
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protein sequence of Gcaud1963.t2

>Gcaud1963.t2 ID=Gcaud1963.t2|Name=Gcaud1963.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=477bp
LDATSVGDEGGFAPNIQDNTEGLRLLEEAIEMAGYTGKVKVGMDVAASEF
WKDDKKMYDLDFKTADNDGSQCLTGEQLGELYKGFVADFPMVSIEDPFDQ
DDWESYAALTAAVGENVQIVGDDLLVTNPTRIQTGITKKACNALLLKVNQ
IGSITEAIQACKMSRDAGWGVMVSHRSGETEDTFIADLCVGLGTAQIKTG
APCRSERLAKYNQLLRIEEELGAEAIYAGSTNAVMNPEYDYLYKNLLIGD
SVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLL
RFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSS
YYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLT
SKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQ
PTKTPNGGTVKVSAKDEEVSASSGCC*
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mRNA from alignment at NODE_802_length_17758_cov_4.100526:10889..13770-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1963.t2 ID=Gcaud1963.t2|Name=Gcaud1963.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2882bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..13770- (Gracilaria caudata M_176_S67 male)
TTGGATGCTACTAGCGTTGGTGATGAAGGTGGCTTTGCTCCAAATATTCA
GGATAATACTGAAGGTCTTCGGTTATTGGAAGAGGCTATCGAAATGGCCG
GATACACTGGAAAGGTGAAGGTCGGTATGGATGTCGCTGCCAGTGAATTT
TGGAAGGACGATAAGAAGATGTACGATCTTGATTTCAAGACTGCAGATAA
TGACGGCTCTCAATGCCTAACTGGTGAGCAACTCGGCGAACTGTACAAGG
GCTTCGTCGCTGATTTCCCAATGGTTTCCATCGAAGATCCTTTCGATCAA
GATGATTGGGAATCTTACGCGGCGCTTACTGCAGCGGTTGGTGAGAATGT
TCAGATCGTTGGCGATGATCTTCTTGTAACCAATCCAACTCGCATTCAGA
CTGGTATCACAAAGAAGGCTTGCAATGCTCTGCTGCTCAAGGTAAATCAG
ATTGGATCCATCACTGAAGCTATTCAAGCGTGCAAGATGTCGCGCGATGC
GGGATGGGGCGTCATGGTTTCCCATCGATCGGGTGAAACAGAAGATACTT
TCATTGCTGATTTGTGTGTCGGACTTGGCACAGCGCAGATTAAGACCGGT
GCCCCTTGCCGCTCCGAGCGACTTGCCAAATACAACCAGCTTTTGCGAAT
TGAAGAGGAGCTTGGCGCTGAAGCTATCTACGCGGGGTCCAGTTTCCGTA
CCCCCTGGGCTATATAAGGGTTTGCTCGTGTGGATGTCATAGTGCAGCCC
AAAGATTAATACATATCATCGTATTAGACAGCGAGAAGATATCTCAGTTA
CTCGTTTGCCTGAAACTCGAAGGCCTTCCACTTTGCGGATGAGGAGATAT
TTCTAAGCTAGAAGAGACTGTGAGTTACATAAAAGAAAACAGAACTCTTG
ACTTATCATTGATGCCCAAGTCTGGTTGGTGCGCCGCGTAATGAACAGAC
GACAGAGAACAACAGAATACCATTGCAACTTTGTGGTTGTTGTGATTTAT
CATACCGCGCGCTGATTCTGTGCACCTCGTCGACAATTAAAACCCGATGA
GCTTGGTGAATTCAGCAGTTTTTGTTCGAGATCTACCACGTCACTATTTA
ACGATTAATTCCAGCAGTAGCTGGCGTGAGCTTGATTGCGAGCAAGCCCG
ATTTGTCTGTGGAAGCGCATGCCAAACAGCATGTGAGGATGAAGTTTCAG
CCTTGTACAGGGCAGCAACCCTTTCGTTGCCTCTGTACTCGGATCTGTGA
TACAGTATCATCGCCAATTCAGATGATCTACGGGCATTCTGTGATTTGTT
CGTCTTCGCGTGTTTTGTGGGTAGCGAAGTATCTTAGCTGAATGGGCTCA
ATATTTCAGAGGCGTCGTCCTCGAATGCCATGTCACGCGAGACGGTAGGT
ACCCAGGGGTGATTTCATGAGTTCGTGCTAAAACGGAGTCCAGATGGCAT
CCCTTTTTGATCCGAAATGGTGGTCCATCATCATCTGTTCATGAATTGGA
GACGTGTCATGTGCAATGCGCGAGATATCAACACAGATAACATTGTGTCA
GCTCAACTGACTGGTGTAAGTCGCCAATGTGTCTGCGACTGAAATTTCAA
GGCCTCAAAAGTGCCTTGTGCTTGATTGTCTTGGACAAAGATGTGACTCA
AATTTCGTTCCCGCCAGCGTCTCCCACACCTCCAACGCCAGGCTGCGTGT
TCGGCTCCTCACGTCTACACCAGATTCTGTCGTGCCATCCGCGCCGCTGA
TCTCTTCCTCGCGCTGAATTTCAACTATAGCGAACGCCGTCATGAATCCG
GAATAGTAAGCTAAACATGTGTCGTCAACAACGCTTGCGATGCAACAGTC
AACATCTTGTGCTAACTCGTCCTTTTTTCGAATCACCACTCTGCAGCGAC
TATTTGTACAAGAATCTTCTCATCGGTGACTCGGTACGTTGCGAAAATAG
CGTGAGAAGTTGATGCGTCTAGACGGTGACCGTTTGCGACTCAAAACCGC
GAAAGGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTT
CTAACTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGA
TTCATTGCGTTTCTTTTGCTCACAGGGGTAAGTTCATCATACTATGAGCC
ACTCAAGCGCCTGATCATTTTCACATTGTACGCGGTTTCTAACTTTGCTT
GGACTTCGTTGCTTTTCGAACGCAAATTATAGTGTTGGGAAGTCATGTCT
CCTACTGCGTTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAA
TCGGTGTTGATTTCGTACGTCTCGCCAGTCTTCGCCCGATACATGTTTGC
GTCGCGTAATACTCTTCAAGAGCTGACTCTGATTTGTTGCGAATGCAATG
GCGCGCAGAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTT
CAGATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTC
ATACTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATC
AAGAGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTT
GCGTCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGAC
ATCGAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTT
TGGGCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAG
GCGGCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCA
ACCAACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATG
AAGAAGTCTCGGCATCATCTGGATGCTGCTAA
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Coding sequence (CDS) from alignment at NODE_802_length_17758_cov_4.100526:10889..13770-

>Gcaud1963.t2 ID=Gcaud1963.t2|Name=Gcaud1963.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1431bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..13770- (Gracilaria caudata M_176_S67 male)
TTGGATGCTACTAGCGTTGGTGATGAAGGTGGCTTTGCTCCAAATATTCA
GGATAATACTGAAGGTCTTCGGTTATTGGAAGAGGCTATCGAAATGGCCG
GATACACTGGAAAGGTGAAGGTCGGTATGGATGTCGCTGCCAGTGAATTT
TGGAAGGACGATAAGAAGATGTACGATCTTGATTTCAAGACTGCAGATAA
TGACGGCTCTCAATGCCTAACTGGTGAGCAACTCGGCGAACTGTACAAGG
GCTTCGTCGCTGATTTCCCAATGGTTTCCATCGAAGATCCTTTCGATCAA
GATGATTGGGAATCTTACGCGGCGCTTACTGCAGCGGTTGGTGAGAATGT
TCAGATCGTTGGCGATGATCTTCTTGTAACCAATCCAACTCGCATTCAGA
CTGGTATCACAAAGAAGGCTTGCAATGCTCTGCTGCTCAAGGTAAATCAG
ATTGGATCCATCACTGAAGCTATTCAAGCGTGCAAGATGTCGCGCGATGC
GGGATGGGGCGTCATGGTTTCCCATCGATCGGGTGAAACAGAAGATACTT
TCATTGCTGATTTGTGTGTCGGACTTGGCACAGCGCAGATTAAGACCGGT
GCCCCTTGCCGCTCCGAGCGACTTGCCAAATACAACCAGCTTTTGCGAAT
TGAAGAGGAGCTTGGCGCTGAAGCTATCTACGCGGGGTCCACGAACGCCG
TCATGAATCCGGAATACGACTATTTGTACAAGAATCTTCTCATCGGTGAC
TCGGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTTCT
AACTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGATT
CATTGCGTTTCTTTTGCTCACAGGGTGTTGGGAAGTCATGTCTCCTACTG
CGTTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAATCGGTGT
TGATTTCAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTTC
AGATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTCA
TACTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATCA
AGAGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTTG
CGTCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGACA
TCGAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTTT
GGGCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAGG
CGGCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCAA
CCAACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATGA
AGAAGTCTCGGCATCATCTGGATGCTGCTAA
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