Gcaud1963.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1963.t1
Unique NameGcaud1963.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length243
Homology
BLAST of Gcaud1963.t1 vs. uniprot
Match: R7QG41_CHOCR (Rab1 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QG41_CHOCR)

HSP 1 Score: 352 bits (902), Expect = 3.850e-121
Identity = 188/242 (77.69%), Postives = 193/242 (79.75%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC 242
            MNPEYDYLYKNLLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKND+TSKKVVDTATAKEFADSLGI+FLETSAKT+ENVE AF AMAAEIKASTSFQP K   GGTV VS+KDEEV +SSGCC
Sbjct:    1 MNPEYDYLYKNLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDMTSKKVVDTATAKEFADSLGIRFLETSAKTSENVEGAFLAMAAEIKASTSFQPAKNNAGGTVNVSSKDEEVKSSSGCC 202          
BLAST of Gcaud1963.t1 vs. uniprot
Match: A0A1X6P190_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P190_PORUM)

HSP 1 Score: 306 bits (783), Expect = 5.590e-103
Identity = 168/211 (79.62%), Postives = 176/211 (83.41%), Query Frame = 0
Query:   33 LTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQP-TKTPNGGTVKVSAKDEEVSASSGCC 242
            +T EYD   +   I D S        VGKS LLLRFADDTYTESYISTIGVDFKIRTIEL+GK IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD ESFNNVKSWLQEIDRFASEHV KLLVGNKNDLTSKK+VDTA AKEFADSLGIKFLETSAKTAENVE+AF  MA EIKASTSFQP T   N G V VS++D EV +S GCC
Sbjct:    3 MTAEYDYLFKLLLIGDSS--------VGKSALLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDLESFNNVKSWLQEIDRFASEHVNKLLVGNKNDLTSKKMVDTAVAKEFADSLGIKFLETSAKTAENVESAFLTMATEIKASTSFQPATNKDNRGGVNVSSRDAEVKSSGGCC 205          
BLAST of Gcaud1963.t1 vs. uniprot
Match: M2X9H6_GALSU (Rab family, other n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X9H6_GALSU)

HSP 1 Score: 298 bits (762), Expect = 8.170e-100
Identity = 163/242 (67.36%), Postives = 173/242 (71.49%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTY ESYISTIGVDFKIRTIELDGK +KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK+WL EIDR+A+E V KLLVGNKNDLT+KKVVDTATAKEFADSLGIKFLETSAKT+ENVE AF  MA EIK   + QP        + V A  +EV  SS CC
Sbjct:    1 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYNESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKTWLHEIDRYANESVNKLLVGNKNDLTTKKVVDTATAKEFADSLGIKFLETSAKTSENVEQAFITMAQEIKERMASQPQTQKTSSGIHVGANAQEVKESSSCC 202          
BLAST of Gcaud1963.t1 vs. uniprot
Match: A0A8C6SBW8_9GOBI (RAB1A, member RAS oncogene family a n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A8C6SBW8_9GOBI)

HSP 1 Score: 286 bits (732), Expect = 2.790e-95
Identity = 161/242 (66.53%), Postives = 172/242 (71.07%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVK WLQEIDR+ASE+V KLLVGNK DLT+KKVVD  TAKEFAD+LGI FLETSAK+A NVE AF  MAAEIK       T   + G VK+ +K  + S S GCC
Sbjct:    1 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADNLGIPFLETSAKSASNVEQAFMTMAAEIKKRMGPGATAGGDKGNVKIQSKPVQTS-SGGCC 201          
BLAST of Gcaud1963.t1 vs. uniprot
Match: Q7XY44_GRIJA (GTP-binding protein (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY44_GRIJA)

HSP 1 Score: 284 bits (727), Expect = 3.200e-95
Identity = 150/194 (77.32%), Postives = 151/194 (77.84%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKT 194
            MNPEYDYLYKNLLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKND+TSKKVVDT TAK FADSLGIKFLETSAKT
Sbjct:    1 MNPEYDYLYKNLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDMTSKKVVDTETAKNFADSLGIKFLETSAKT 154          
BLAST of Gcaud1963.t1 vs. uniprot
Match: A0A6P7JSM6_9TELE (ras-related protein ORAB-1-like n=11 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P7JSM6_9TELE)

HSP 1 Score: 284 bits (727), Expect = 1.720e-94
Identity = 163/245 (66.53%), Postives = 171/245 (69.80%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGG---TVKVSAKDEEVSASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVK WLQEIDR+ASE+V KLLVGNK DLT+KKVVD  TAKEFADSLGI FLETSAK A NVE AF  MAAEIK      P  T  GG    VK++      S+S GCC
Sbjct:    1 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR--MGPGATAGGGEKPNVKLTPGTTVKSSSGGCC 203          
BLAST of Gcaud1963.t1 vs. uniprot
Match: A0A061R8A7_9CHLO (Ras-related protein Rab-1A n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A061R8A7_9CHLO)

HSP 1 Score: 283 bits (723), Expect = 7.220e-94
Identity = 155/242 (64.05%), Postives = 169/242 (69.83%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRT+EL+GKVIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVK WL EIDR+A+E+V KLLVGNK+DLT+KKVVD ATAK FAD +GI FLETSAK+A NVE AF  MA EIK   + QP  +  G TVK        +  S CC
Sbjct:    3 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELEGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYANENVNKLLVGNKSDLTAKKVVDYATAKAFADEIGIPFLETSAKSATNVEQAFMTMATEIKTRMASQPVASNKGNTVKPGEGRPVSAGKSSCC 204          
BLAST of Gcaud1963.t1 vs. uniprot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 n=6 Tax=Chlamydomonas TaxID=3052 RepID=YPTC1_CHLRE)

HSP 1 Score: 282 bits (721), Expect = 1.410e-93
Identity = 158/243 (65.02%), Postives = 171/243 (70.37%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEV-SASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRT+ELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVK WL EIDR+ASE+V KLLVGNK+DLTSKKVV+ + AK FAD +GI FLETSAK A NVE AF  MAAEIK   + QP  T  GG V    + + + S SS CC
Sbjct:    1 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203          
BLAST of Gcaud1963.t1 vs. uniprot
Match: Q6GLH0_XENTR (RAB1A, member RAS oncogene family n=6 Tax=Xenopus TaxID=8353 RepID=Q6GLH0_XENTR)

HSP 1 Score: 281 bits (720), Expect = 2.060e-93
Identity = 161/242 (66.53%), Postives = 167/242 (69.01%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVK WLQEIDR+ASE+V KLLVGNK DLT+KKVVD  TAKEFADSLGI FLETSAK A NVE AF  MAAEIK      P  T  G    V  +   V  SSG C
Sbjct:    4 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR--MGPGATAGGQEKNVKIQSTPVKQSSGGC 203          
BLAST of Gcaud1963.t1 vs. uniprot
Match: Q7ZSZ0_DANRE (RAB1A, member RAS oncogene family n=3 Tax=Osteoglossocephalai TaxID=1489341 RepID=Q7ZSZ0_DANRE)

HSP 1 Score: 281 bits (719), Expect = 2.640e-93
Identity = 160/242 (66.12%), Postives = 170/242 (70.25%), Query Frame = 0
Query:    1 MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDSLRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFASEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEAAFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC 242
            MNPEYDYL+K LLIGDS                                        GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVK WLQEIDR+ASE+V KLLVGNK DLT+KKVVD  TAKEFADSLGI FLETSAK A NVE AF  MAAEIK       T   +  T+K+ +   +  AS GCC
Sbjct:    1 MNPEYDYLFKLLLIGDS----------------------------------------GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATAGGSEKTMKIESTPVKP-ASGGCC 201          
The following BLAST results are available for this feature:
BLAST of Gcaud1963.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QG41_CHOCR3.850e-12177.69Rab1 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepI... [more]
A0A1X6P190_PORUM5.590e-10379.62Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2X9H6_GALSU8.170e-10067.36Rab family, other n=1 Tax=Galdieria sulphuraria Ta... [more]
A0A8C6SBW8_9GOBI2.790e-9566.53RAB1A, member RAS oncogene family a n=2 Tax=Percom... [more]
Q7XY44_GRIJA3.200e-9577.32GTP-binding protein (Fragment) n=1 Tax=Griffithsia... [more]
A0A6P7JSM6_9TELE1.720e-9466.53ras-related protein ORAB-1-like n=11 Tax=Percomorp... [more]
A0A061R8A7_9CHLO7.220e-9464.05Ras-related protein Rab-1A n=3 Tax=Viridiplantae T... [more]
YPTC1_CHLRE1.410e-9365.02GTP-binding protein YPTC1 n=6 Tax=Chlamydomonas Ta... [more]
Q6GLH0_XENTR2.060e-9366.53RAB1A, member RAS oncogene family n=6 Tax=Xenopus ... [more]
Q7ZSZ0_DANRE2.640e-9366.12RAB1A, member RAS oncogene family n=3 Tax=Osteoglo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 90..112
score: 57.56
coord: 49..70
score: 36.88
coord: 187..209
score: 46.65
coord: 152..165
score: 50.36
coord: 72..88
score: 35.4
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 54..235
e-value: 1.6E-4
score: 15.5
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 57..212
e-value: 1.2E-90
score: 317.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 56..212
e-value: 3.5E-30
score: 116.3
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 34..213
e-value: 0.0038
score: 0.7
NoneNo IPR availablePANTHERPTHR47977LD21953P-RELATEDcoord: 57..242
NoneNo IPR availablePANTHERPTHR47977:SF6RAS-RELATED PROTEIN RABD2A-LIKEcoord: 57..242
NoneNo IPR availablePROSITEPS51417ARFcoord: 2..209
score: 9.371597
NoneNo IPR availablePROSITEPS51420RHOcoord: 36..211
score: 10.18364
NoneNo IPR availablePROSITEPS51419RABcoord: 34..242
score: 34.240452
NoneNo IPR availableCDDcd01869Rab1_Ypt1coord: 7..212
e-value: 1.75947E-112
score: 317.734
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 58..210
e-value: 9.9E-14
score: 55.5
IPR001806Small GTPasePFAMPF00071Rascoord: 56..210
e-value: 1.2E-60
score: 203.7
IPR001806Small GTPasePROSITEPS51421RAScoord: 39..242
score: 18.407413
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 52..242
e-value: 8.8E-69
score: 232.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 57..224
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 57..204
e-value: 1.7E-29
score: 100.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_802_length_17758_cov_4.100526contigNODE_802_length_17758_cov_4.100526:10889..11979 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1Gcaud1963.t1Gracilaria caudata M_176_S67 malemRNANODE_802_length_17758_cov_4.100526 10889..11979 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDS
LRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQ
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFA
SEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEA
AFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom