Gcaud1963.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1963.t1
Unique NameGcaud1963.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_802_length_17758_cov_4.100526contigNODE_802_length_17758_cov_4.100526:10889..11979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703007.1
Preferred nameYPT1
PFAMsRas
Max annot lvl2759|Eukaryota
KEGG koko:K03354,ko:K07874
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05134,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05134,map05166
KEGG ModuleM00389
GOsGO:0000045,GO:0000139,GO:0000149,GO:0000407,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005801,GO:0005802,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006900,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016070,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017111,GO:0019220,GO:0019222,GO:0019439,GO:0022406,GO:0022411,GO:0022607,GO:0023051,GO:0030742,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032258,GO:0032456,GO:0032588,GO:0032984,GO:0033036,GO:0033365,GO:0034497,GO:0034498,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035493,GO:0035494,GO:0042147,GO:0042175,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0046907,GO:0048193,GO:0048194,GO:0048211,GO:0048278,GO:0048284,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051338,GO:0051640,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0072665,GO:0080115,GO:0080134,GO:0080135,GO:0090114,GO:0090174,GO:0090304,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:0140056,GO:1900101,GO:1901360,GO:1901361,GO:1901575,GO:1903008,GO:1905037,GO:1905897,GO:1990261
Evalue1e-100
EggNOG OGsKOG0084@1|root,KOG0084@2759|Eukaryota
DescriptionGTPase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko04031,ko04121,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1963Gcaud1963Gracilaria caudata M_176_S67 malegeneNODE_802_length_17758_cov_4.100526 10889..13770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1Gcaud1963.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_802_length_17758_cov_4.100526 10889..11979 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1.stop1Gcaud1963.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_802_length_17758_cov_4.100526 10889..10891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1.CDS1Gcaud1963.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 10889..11362 -
Gcaud1963.t1.CDS2Gcaud1963.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11457..11538 -
Gcaud1963.t1.CDS3Gcaud1963.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11644..11765 -
Gcaud1963.t1.CDS4Gcaud1963.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11838..11874 -
Gcaud1963.t1.CDS5Gcaud1963.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_802_length_17758_cov_4.100526 11966..11979 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1.exon1Gcaud1963.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 10889..11362 -
Gcaud1963.t1.exon2Gcaud1963.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11457..11538 -
Gcaud1963.t1.exon3Gcaud1963.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11644..11765 -
Gcaud1963.t1.exon4Gcaud1963.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11838..11874 -
Gcaud1963.t1.exon5Gcaud1963.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_802_length_17758_cov_4.100526 11966..11979 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1.intron1Gcaud1963.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11363..11456 -
Gcaud1963.t1.intron2Gcaud1963.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11539..11643 -
Gcaud1963.t1.intron3Gcaud1963.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11766..11837 -
Gcaud1963.t1.intron4Gcaud1963.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_802_length_17758_cov_4.100526 11875..11965 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1963.t1.start1Gcaud1963.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_802_length_17758_cov_4.100526 11977..11979 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDS
LRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQ
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFA
SEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEA
AFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC*
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spliced messenger RNA

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..11979- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGGAATACGACTATTTGTACAAGAATCTTCTCATCGGTGACTC
GGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTTCTAA
CTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGATTCA
TTGCGTTTCTTTTGCTCACAGGGTGTTGGGAAGTCATGTCTCCTACTGCG
TTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAATCGGTGTTG
ATTTCAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTTCAG
ATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTCATA
CTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATCAAG
AGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTTGCG
TCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGACATC
GAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTTTGG
GCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAGGCG
GCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCAACC
AACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATGAAG
AAGTCTCGGCATCATCTGGATGCTGCTAA
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protein sequence of Gcaud1963.t1

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDS
LRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQ
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFA
SEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEA
AFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC*
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mRNA from alignment at NODE_802_length_17758_cov_4.100526:10889..11979-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1091bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..11979- (Gracilaria caudata M_176_S67 male)
ATGAATCCGGAATAGTAAGCTAAACATGTGTCGTCAACAACGCTTGCGAT
GCAACAGTCAACATCTTGTGCTAACTCGTCCTTTTTTCGAATCACCACTC
TGCAGCGACTATTTGTACAAGAATCTTCTCATCGGTGACTCGGTACGTTG
CGAAAATAGCGTGAGAAGTTGATGCGTCTAGACGGTGACCGTTTGCGACT
CAAAACCGCGAAAGGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACC
CAATTTCTTCTAACTGACGAATACGATGGCCAACTTCAATGCGACTCAAT
TATTGATGATTCATTGCGTTTCTTTTGCTCACAGGGGTAAGTTCATCATA
CTATGAGCCACTCAAGCGCCTGATCATTTTCACATTGTACGCGGTTTCTA
ACTTTGCTTGGACTTCGTTGCTTTTCGAACGCAAATTATAGTGTTGGGAA
GTCATGTCTCCTACTGCGTTTCGCCGATGACACGTATACCGAAAGTTATA
TCTCTACAATCGGTGTTGATTTCGTACGTCTCGCCAGTCTTCGCCCGATA
CATGTTTGCGTCGCGTAATACTCTTCAAGAGCTGACTCTGATTTGTTGCG
AATGCAATGGCGCGCAGAAAATTCGTACAATCGAACTGGACGGCAAAGTA
ATCAAGCTTCAGATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAAT
CACATCCTCATACTACCGCGGTGCGCATGGTATCATCATTGTCTATGATG
TCACAGATCAAGAGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATC
GATCGATTTGCGTCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAA
TGATTTGACATCGAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTG
CCGACTCTTTGGGCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAA
AATGTCGAGGCGGCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTAC
CTCTTTCCAACCAACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCG
CCAAGGATGAAGAAGTCTCGGCATCATCTGGATGCTGCTAA
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Coding sequence (CDS) from alignment at NODE_802_length_17758_cov_4.100526:10889..11979-

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=729bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..11979- (Gracilaria caudata M_176_S67 male)
ATGAATCCGGAATACGACTATTTGTACAAGAATCTTCTCATCGGTGACTC
GGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTTCTAA
CTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGATTCA
TTGCGTTTCTTTTGCTCACAGGGTGTTGGGAAGTCATGTCTCCTACTGCG
TTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAATCGGTGTTG
ATTTCAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTTCAG
ATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTCATA
CTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATCAAG
AGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTTGCG
TCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGACATC
GAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTTTGG
GCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAGGCG
GCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCAACC
AACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATGAAG
AAGTCTCGGCATCATCTGGATGCTGCTAA
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