Gcaud1963.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1963.t1
Unique Name	Gcaud1963.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_802_length_17758_cov_4.100526	contig	NODE_802_length_17758_cov_4.100526:10889..11979 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703007.1
Preferred name	YPT1
PFAMs	Ras
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03354,ko:K07874
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05134,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05134,map05166
KEGG Module	M00389
GOs	GO:0000045,GO:0000139,GO:0000149,GO:0000407,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005801,GO:0005802,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006900,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016070,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017111,GO:0019220,GO:0019222,GO:0019439,GO:0022406,GO:0022411,GO:0022607,GO:0023051,GO:0030742,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032258,GO:0032456,GO:0032588,GO:0032984,GO:0033036,GO:0033365,GO:0034497,GO:0034498,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035493,GO:0035494,GO:0042147,GO:0042175,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0046907,GO:0048193,GO:0048194,GO:0048211,GO:0048278,GO:0048284,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051338,GO:0051640,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0072665,GO:0080115,GO:0080134,GO:0080135,GO:0090114,GO:0090174,GO:0090304,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:0140056,GO:1900101,GO:1901360,GO:1901361,GO:1901575,GO:1903008,GO:1905037,GO:1905897,GO:1990261
Evalue	1e-100
EggNOG OGs	KOG0084@1\|root,KOG0084@2759\|Eukaryota
Description	GTPase activity
COG category	S
BRITE	ko00000,ko00001,ko00002,ko03036,ko04031,ko04121,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1963	Gcaud1963	Gracilaria caudata M_176_S67 male	gene	NODE_802_length_17758_cov_4.100526 10889..13770 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1963.t1	Gcaud1963.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_802_length_17758_cov_4.100526 10889..11979 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1963.t1.stop1	Gcaud1963.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_802_length_17758_cov_4.100526 10889..10891 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1963.t1.CDS1	Gcaud1963.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 10889..11362 -
Gcaud1963.t1.CDS2	Gcaud1963.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 11457..11538 -
Gcaud1963.t1.CDS3	Gcaud1963.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 11644..11765 -
Gcaud1963.t1.CDS4	Gcaud1963.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 11838..11874 -
Gcaud1963.t1.CDS5	Gcaud1963.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 11966..11979 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1963.t1.exon1	Gcaud1963.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 10889..11362 -
Gcaud1963.t1.exon2	Gcaud1963.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 11457..11538 -
Gcaud1963.t1.exon3	Gcaud1963.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 11644..11765 -
Gcaud1963.t1.exon4	Gcaud1963.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 11838..11874 -
Gcaud1963.t1.exon5	Gcaud1963.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 11966..11979 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1963.t1.intron1	Gcaud1963.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_802_length_17758_cov_4.100526 11363..11456 -
Gcaud1963.t1.intron2	Gcaud1963.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_802_length_17758_cov_4.100526 11539..11643 -
Gcaud1963.t1.intron3	Gcaud1963.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_802_length_17758_cov_4.100526 11766..11837 -
Gcaud1963.t1.intron4	Gcaud1963.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_802_length_17758_cov_4.100526 11875..11965 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1963.t1.start1	Gcaud1963.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_802_length_17758_cov_4.100526 11977..11979 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_802_length_17758_cov_4.100526:10889..11979-
coding sequence from alignment at NODE_802_length_17758_cov_4.100526:10889..11979-

mRNA sequence

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp
MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDS
LRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQ
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFA
SEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEA
AFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC*

spliced messenger RNA

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=729bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..11979- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGGAATACGACTATTTGTACAAGAATCTTCTCATCGGTGACTC
GGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTTCTAA
CTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGATTCA
TTGCGTTTCTTTTGCTCACAGGGTGTTGGGAAGTCATGTCTCCTACTGCG
TTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAATCGGTGTTG
ATTTCAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTTCAG
ATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTCATA
CTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATCAAG
AGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTTGCG
TCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGACATC
GAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTTTGG
GCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAGGCG
GCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCAACC
AACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATGAAG
AAGTCTCGGCATCATCTGGATGCTGCTAA

protein sequence of Gcaud1963.t1

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=243bp
MNPEYDYLYKNLLIGDSVANQTCSKCFRTQFLLTDEYDGQLQCDSIIDDS
LRFFCSQGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKVIKLQ
IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKSWLQEIDRFA
SEHVCKLLVGNKNDLTSKKVVDTATAKEFADSLGIKFLETSAKTAENVEA
AFTAMAAEIKASTSFQPTKTPNGGTVKVSAKDEEVSASSGCC*

mRNA from alignment at NODE_802_length_17758_cov_4.100526:10889..11979-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1091bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..11979- (Gracilaria caudata M_176_S67 male)
ATGAATCCGGAATAGTAAGCTAAACATGTGTCGTCAACAACGCTTGCGAT
GCAACAGTCAACATCTTGTGCTAACTCGTCCTTTTTTCGAATCACCACTC
TGCAGCGACTATTTGTACAAGAATCTTCTCATCGGTGACTCGGTACGTTG
CGAAAATAGCGTGAGAAGTTGATGCGTCTAGACGGTGACCGTTTGCGACT
CAAAACCGCGAAAGGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACC
CAATTTCTTCTAACTGACGAATACGATGGCCAACTTCAATGCGACTCAAT
TATTGATGATTCATTGCGTTTCTTTTGCTCACAGGGGTAAGTTCATCATA
CTATGAGCCACTCAAGCGCCTGATCATTTTCACATTGTACGCGGTTTCTA
ACTTTGCTTGGACTTCGTTGCTTTTCGAACGCAAATTATAGTGTTGGGAA
GTCATGTCTCCTACTGCGTTTCGCCGATGACACGTATACCGAAAGTTATA
TCTCTACAATCGGTGTTGATTTCGTACGTCTCGCCAGTCTTCGCCCGATA
CATGTTTGCGTCGCGTAATACTCTTCAAGAGCTGACTCTGATTTGTTGCG
AATGCAATGGCGCGCAGAAAATTCGTACAATCGAACTGGACGGCAAAGTA
ATCAAGCTTCAGATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAAT
CACATCCTCATACTACCGCGGTGCGCATGGTATCATCATTGTCTATGATG
TCACAGATCAAGAGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATC
GATCGATTTGCGTCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAA
TGATTTGACATCGAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTG
CCGACTCTTTGGGCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAA
AATGTCGAGGCGGCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTAC
CTCTTTCCAACCAACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCG
CCAAGGATGAAGAAGTCTCGGCATCATCTGGATGCTGCTAA

Coding sequence (CDS) from alignment at NODE_802_length_17758_cov_4.100526:10889..11979-

>Gcaud1963.t1 ID=Gcaud1963.t1|Name=Gcaud1963.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=729bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:10889..11979- (Gracilaria caudata M_176_S67 male)
ATGAATCCGGAATACGACTATTTGTACAAGAATCTTCTCATCGGTGACTC
GGTGGCGAACCAAACGTGTAGCAAATGTTTTCGGACCCAATTTCTTCTAA
CTGACGAATACGATGGCCAACTTCAATGCGACTCAATTATTGATGATTCA
TTGCGTTTCTTTTGCTCACAGGGTGTTGGGAAGTCATGTCTCCTACTGCG
TTTCGCCGATGACACGTATACCGAAAGTTATATCTCTACAATCGGTGTTG
ATTTCAAAATTCGTACAATCGAACTGGACGGCAAAGTAATCAAGCTTCAG
ATATGGGATACAGCAGGGCAAGAACGTTTTAGAACAATCACATCCTCATA
CTACCGCGGTGCGCATGGTATCATCATTGTCTATGATGTCACAGATCAAG
AGTCATTCAACAATGTGAAATCGTGGCTACAAGAGATCGATCGATTTGCG
TCAGAACATGTTTGCAAGCTCTTGGTTGGAAACAAGAATGATTTGACATC
GAAGAAAGTTGTAGATACCGCGACTGCGAAAGAATTTGCCGACTCTTTGG
GCATCAAGTTCCTGGAGACTTCCGCCAAGACCGCCGAAAATGTCGAGGCG
GCTTTTACAGCCATGGCTGCGGAAATCAAAGCATCTACCTCTTTCCAACC
AACTAAGACTCCCAACGGCGGTACTGTAAAAGTTTCCGCCAAGGATGAAG
AAGTCTCGGCATCATCTGGATGCTGCTAA