Gcaud1960.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1960.t1
Unique Name	Gcaud1960.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_802_length_17758_cov_4.100526	contig	NODE_802_length_17758_cov_4.100526:5863..7212 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4577.GRMZM2G046681_P01
PFAMs	MFS_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08193
KEGG TC	2.A.1.14
GOs	GO:0003674,GO:0005215,GO:0005315,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0009987,GO:0010028,GO:0015075,GO:0015144,GO:0015145,GO:0015229,GO:0015291,GO:0015318,GO:0015711,GO:0015749,GO:0015849,GO:0015882,GO:0016020,GO:0016021,GO:0016108,GO:0016116,GO:0016122,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031967,GO:0031969,GO:0031975,GO:0034219,GO:0034220,GO:0035461,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0051119,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0071704,GO:0090482,GO:0098656,GO:1903825,GO:1905039
Evalue	1.21e-60
EggNOG OGs	KOG2532@1\|root,KOG2532@2759\|Eukaryota,37K63@33090\|Viridiplantae,3GE2R@35493\|Streptophyta,3KUAD@4447\|Liliopsida,3I7F2@38820\|Poales
Description	antr2,pht4
COG category	G
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1960	Gcaud1960	Gracilaria caudata M_176_S67 male	gene	NODE_802_length_17758_cov_4.100526 5863..7212 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1960.t1.start1	Gcaud1960.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_802_length_17758_cov_4.100526 5863..5865 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1960.t1.CDS1	Gcaud1960.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 5863..7212 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1960.t1.exon1	Gcaud1960.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 5863..7212 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1960.t1.stop1	Gcaud1960.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_802_length_17758_cov_4.100526 7210..7212 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1960.t1	Gcaud1960.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_802_length_17758_cov_4.100526 5863..7212 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+
coding sequence from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+

mRNA sequence

>Gcaud1960.t1 ID=Gcaud1960.t1|Name=Gcaud1960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MIPERFVMVLLCAVCCCINYADRVNMSVAIINIAEQYSFNLHEQSLIMSY
FYLGYLPMNLGGALLCRRFGAKNVLTCGATLWSFFTVVTPIAAQMGFKVL
VACRFLMGLSEGVAYPSVYHFLSTWISPTERARGVALLLSGTHVGTTLAL
ILSPIIIREASWQAIFYSFGTLGMVWVAVWQMVAYDRYEKLQTSPPSEEE
ACASSDSDPDISQQKESSSSTSQQMSQQMSQEMRLVLAILRNRRTLAVCV
TQAMFGLVHFVILSWLPSYFKNVYDIQTTSLSFTFLPYFSMAVSGNIGGY
LADALLQGGMSLTRVRKVVTFVANLGAATMLLAFASAKTVGIALGYISLS
LAFMSLNSGGFASCYMDMAAPSVVGIFKATSNTLASFGGFLAIPLSTKVM
DMLGGSWRAMFASLSLCYLCMNFVFCSFVECERTLDESSGLPSKTALVS*

spliced messenger RNA

>Gcaud1960.t1 ID=Gcaud1960.t1|Name=Gcaud1960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCCGAGCGCTTTGTGATGGTGCTGCTGTGCGCCGTTTGCTGCTG
TATCAACTATGCGGACCGCGTCAATATGTCCGTCGCCATCATTAACATCG
CCGAGCAGTATTCCTTCAATTTGCATGAGCAGTCCTTGATTATGTCCTAC
TTCTACCTGGGCTATTTGCCCATGAACTTGGGCGGAGCTCTTCTTTGTCG
CCGTTTCGGAGCGAAGAACGTGCTCACTTGTGGCGCAACCCTGTGGTCCT
TCTTCACCGTCGTCACTCCCATTGCGGCCCAAATGGGCTTCAAGGTTCTC
GTTGCGTGTCGCTTTCTCATGGGTCTCTCTGAGGGTGTCGCGTACCCTTC
CGTGTATCATTTTCTTTCAACCTGGATTTCCCCGACTGAGCGAGCCAGAG
GCGTGGCTCTATTGCTCAGTGGCACGCATGTTGGCACAACGCTTGCTCTC
ATATTATCTCCAATTATCATTCGAGAAGCCTCATGGCAGGCTATATTCTA
TTCGTTCGGCACTCTTGGTATGGTCTGGGTGGCAGTGTGGCAGATGGTTG
CCTACGATCGCTATGAGAAGCTGCAAACCTCTCCACCATCTGAAGAAGAA
GCTTGTGCTTCCTCGGACTCCGACCCGGACATTAGCCAGCAGAAAGAGTC
CTCGTCTTCCACCTCTCAACAAATGTCTCAACAAATGTCTCAAGAAATGC
GTTTAGTACTTGCAATCCTCCGAAACAGGCGCACACTCGCTGTTTGTGTC
ACGCAGGCTATGTTTGGCCTCGTACATTTTGTCATTCTCAGCTGGCTTCC
GTCGTACTTTAAGAACGTCTATGACATTCAAACCACCTCTCTCTCTTTCA
CGTTTCTCCCGTACTTCTCTATGGCTGTCAGTGGCAACATTGGCGGATAT
CTCGCAGATGCGCTACTGCAGGGCGGAATGTCACTTACTAGAGTCAGAAA
GGTCGTCACATTCGTAGCAAATCTTGGAGCTGCCACTATGTTGCTTGCTT
TTGCATCCGCGAAAACAGTTGGCATAGCCCTGGGGTACATATCACTAAGT
TTAGCATTTATGAGCCTGAACAGCGGAGGATTTGCGAGCTGCTACATGGA
CATGGCAGCGCCAAGTGTGGTTGGAATCTTCAAGGCCACCTCAAACACCC
TGGCGAGCTTTGGTGGCTTTCTCGCCATCCCATTATCCACGAAAGTCATG
GATATGCTGGGAGGTTCCTGGCGAGCTATGTTTGCGAGCCTTAGCTTATG
TTATCTGTGCATGAATTTTGTTTTCTGTTCCTTCGTGGAATGCGAACGCA
CTCTAGACGAAAGCAGCGGCCTGCCTTCGAAGACTGCCCTCGTCTCTTGA

protein sequence of Gcaud1960.t1

>Gcaud1960.t1 ID=Gcaud1960.t1|Name=Gcaud1960.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MIPERFVMVLLCAVCCCINYADRVNMSVAIINIAEQYSFNLHEQSLIMSY
FYLGYLPMNLGGALLCRRFGAKNVLTCGATLWSFFTVVTPIAAQMGFKVL
VACRFLMGLSEGVAYPSVYHFLSTWISPTERARGVALLLSGTHVGTTLAL
ILSPIIIREASWQAIFYSFGTLGMVWVAVWQMVAYDRYEKLQTSPPSEEE
ACASSDSDPDISQQKESSSSTSQQMSQQMSQEMRLVLAILRNRRTLAVCV
TQAMFGLVHFVILSWLPSYFKNVYDIQTTSLSFTFLPYFSMAVSGNIGGY
LADALLQGGMSLTRVRKVVTFVANLGAATMLLAFASAKTVGIALGYISLS
LAFMSLNSGGFASCYMDMAAPSVVGIFKATSNTLASFGGFLAIPLSTKVM
DMLGGSWRAMFASLSLCYLCMNFVFCSFVECERTLDESSGLPSKTALVS*

mRNA from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1960.t1 ID=Gcaud1960.t1|Name=Gcaud1960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+ (Gracilaria caudata M_176_S67 male)
ATGATTCCCGAGCGCTTTGTGATGGTGCTGCTGTGCGCCGTTTGCTGCTG
TATCAACTATGCGGACCGCGTCAATATGTCCGTCGCCATCATTAACATCG
CCGAGCAGTATTCCTTCAATTTGCATGAGCAGTCCTTGATTATGTCCTAC
TTCTACCTGGGCTATTTGCCCATGAACTTGGGCGGAGCTCTTCTTTGTCG
CCGTTTCGGAGCGAAGAACGTGCTCACTTGTGGCGCAACCCTGTGGTCCT
TCTTCACCGTCGTCACTCCCATTGCGGCCCAAATGGGCTTCAAGGTTCTC
GTTGCGTGTCGCTTTCTCATGGGTCTCTCTGAGGGTGTCGCGTACCCTTC
CGTGTATCATTTTCTTTCAACCTGGATTTCCCCGACTGAGCGAGCCAGAG
GCGTGGCTCTATTGCTCAGTGGCACGCATGTTGGCACAACGCTTGCTCTC
ATATTATCTCCAATTATCATTCGAGAAGCCTCATGGCAGGCTATATTCTA
TTCGTTCGGCACTCTTGGTATGGTCTGGGTGGCAGTGTGGCAGATGGTTG
CCTACGATCGCTATGAGAAGCTGCAAACCTCTCCACCATCTGAAGAAGAA
GCTTGTGCTTCCTCGGACTCCGACCCGGACATTAGCCAGCAGAAAGAGTC
CTCGTCTTCCACCTCTCAACAAATGTCTCAACAAATGTCTCAAGAAATGC
GTTTAGTACTTGCAATCCTCCGAAACAGGCGCACACTCGCTGTTTGTGTC
ACGCAGGCTATGTTTGGCCTCGTACATTTTGTCATTCTCAGCTGGCTTCC
GTCGTACTTTAAGAACGTCTATGACATTCAAACCACCTCTCTCTCTTTCA
CGTTTCTCCCGTACTTCTCTATGGCTGTCAGTGGCAACATTGGCGGATAT
CTCGCAGATGCGCTACTGCAGGGCGGAATGTCACTTACTAGAGTCAGAAA
GGTCGTCACATTCGTAGCAAATCTTGGAGCTGCCACTATGTTGCTTGCTT
TTGCATCCGCGAAAACAGTTGGCATAGCCCTGGGGTACATATCACTAAGT
TTAGCATTTATGAGCCTGAACAGCGGAGGATTTGCGAGCTGCTACATGGA
CATGGCAGCGCCAAGTGTGGTTGGAATCTTCAAGGCCACCTCAAACACCC
TGGCGAGCTTTGGTGGCTTTCTCGCCATCCCATTATCCACGAAAGTCATG
GATATGCTGGGAGGTTCCTGGCGAGCTATGTTTGCGAGCCTTAGCTTATG
TTATCTGTGCATGAATTTTGTTTTCTGTTCCTTCGTGGAATGCGAACGCA
CTCTAGACGAAAGCAGCGGCCTGCCTTCGAAGACTGCCCTCGTCTCTTGA

Coding sequence (CDS) from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+

>Gcaud1960.t1 ID=Gcaud1960.t1|Name=Gcaud1960.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:5863..7212+ (Gracilaria caudata M_176_S67 male)
ATGATTCCCGAGCGCTTTGTGATGGTGCTGCTGTGCGCCGTTTGCTGCTG
TATCAACTATGCGGACCGCGTCAATATGTCCGTCGCCATCATTAACATCG
CCGAGCAGTATTCCTTCAATTTGCATGAGCAGTCCTTGATTATGTCCTAC
TTCTACCTGGGCTATTTGCCCATGAACTTGGGCGGAGCTCTTCTTTGTCG
CCGTTTCGGAGCGAAGAACGTGCTCACTTGTGGCGCAACCCTGTGGTCCT
TCTTCACCGTCGTCACTCCCATTGCGGCCCAAATGGGCTTCAAGGTTCTC
GTTGCGTGTCGCTTTCTCATGGGTCTCTCTGAGGGTGTCGCGTACCCTTC
CGTGTATCATTTTCTTTCAACCTGGATTTCCCCGACTGAGCGAGCCAGAG
GCGTGGCTCTATTGCTCAGTGGCACGCATGTTGGCACAACGCTTGCTCTC
ATATTATCTCCAATTATCATTCGAGAAGCCTCATGGCAGGCTATATTCTA
TTCGTTCGGCACTCTTGGTATGGTCTGGGTGGCAGTGTGGCAGATGGTTG
CCTACGATCGCTATGAGAAGCTGCAAACCTCTCCACCATCTGAAGAAGAA
GCTTGTGCTTCCTCGGACTCCGACCCGGACATTAGCCAGCAGAAAGAGTC
CTCGTCTTCCACCTCTCAACAAATGTCTCAACAAATGTCTCAAGAAATGC
GTTTAGTACTTGCAATCCTCCGAAACAGGCGCACACTCGCTGTTTGTGTC
ACGCAGGCTATGTTTGGCCTCGTACATTTTGTCATTCTCAGCTGGCTTCC
GTCGTACTTTAAGAACGTCTATGACATTCAAACCACCTCTCTCTCTTTCA
CGTTTCTCCCGTACTTCTCTATGGCTGTCAGTGGCAACATTGGCGGATAT
CTCGCAGATGCGCTACTGCAGGGCGGAATGTCACTTACTAGAGTCAGAAA
GGTCGTCACATTCGTAGCAAATCTTGGAGCTGCCACTATGTTGCTTGCTT
TTGCATCCGCGAAAACAGTTGGCATAGCCCTGGGGTACATATCACTAAGT
TTAGCATTTATGAGCCTGAACAGCGGAGGATTTGCGAGCTGCTACATGGA
CATGGCAGCGCCAAGTGTGGTTGGAATCTTCAAGGCCACCTCAAACACCC
TGGCGAGCTTTGGTGGCTTTCTCGCCATCCCATTATCCACGAAAGTCATG
GATATGCTGGGAGGTTCCTGGCGAGCTATGTTTGCGAGCCTTAGCTTATG
TTATCTGTGCATGAATTTTGTTTTCTGTTCCTTCGTGGAATGCGAACGCA
CTCTAGACGAAAGCAGCGGCCTGCCTTCGAAGACTGCCCTCGTCTCTTGA