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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6211.A0A068Y5H2 |
| Preferred name | UPP1 |
| PFAMs | PNP_UDP_1 |
| Max annot lvl | 33208|Metazoa |
| KEGG rclass | RC00063 |
| KEGG ko | ko:K00757 |
| KEGG Reaction | R01876,R02484,R08229 |
| KEGG Pathway | ko00240,ko00983,ko01100,map00240,map00983,map01100 |
| GOs | GO:0003674,GO:0003824,GO:0004850,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006139,GO:0006206,GO:0006208,GO:0006212,GO:0006213,GO:0006218,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009032,GO:0009056,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009120,GO:0009163,GO:0009164,GO:0009605,GO:0009628,GO:0009629,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019860,GO:0031974,GO:0031981,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0040011,GO:0042330,GO:0042332,GO:0042454,GO:0042737,GO:0042802,GO:0043094,GO:0043097,GO:0043174,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045098,GO:0045111,GO:0046104,GO:0046108,GO:0046113,GO:0046125,GO:0046131,GO:0046133,GO:0046134,GO:0046135,GO:0046483,GO:0046700,GO:0050896,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0072529,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659 |
| Evalue | 6.36e-50 |
| EggNOG OGs | COG2820@1|root,KOG3728@2759|Eukaryota,38C4J@33154|Opisthokonta,3BAA7@33208|Metazoa,3CWDD@33213|Bilateria |
| EC | 2.4.2.3 |
| Description | Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis |
| COG category | F |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1751.t1.stop1 | Gcaud1751.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1193_length_12810_cov_3.289960 923..925 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1751.t1.start1 | Gcaud1751.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1193_length_12810_cov_3.289960 2521..2523 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1751.t1 ID=Gcaud1751.t1|Name=Gcaud1751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MPNASLARSSPSARRREGVFVARDAAGVSHHKPATVKRYSTNMILLFCFA
VHTPQMRAFCRVFQMPADPHRQRRSDCLPTQHFNEHILLHLGYRLPADTS
YLCEHLNAVTHVILCGSPHRARKIAQAFCSAAPRNFCRTDRYLVLQPVPS
VLIAAHGIGIGSIDVLLHEIYLALNAAQASNWCFIRLGSCGGLGVEPGTL
VVTRRTLAGDLTPSLRMFVLGQDVRYHAQLDNALTQSLLQSAQHMFADNC
ISGDTLCAETFHIAQGRQDGAFVPYAQQDKLSFFERCRGAGVVNVEMESL
ALAAFSTRMNVPSAVVCVVLVDRLQFETPTDDSKTLAAFEQRCIELVVRF
VQANSALHSR* back to topspliced messenger RNA >Gcaud1751.t1 ID=Gcaud1751.t1|Name=Gcaud1751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:923..2523- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCAATGCATCATTGGCACGTAGCTCACCTTCCGCCAGACGCCGGGA
AGGTGTCTTTGTCGCAAGAGATGCTGCGGGTGTAAGTCATCACAAGCCGG
CAACGGTGAAGCGATACTCCACCAATATGATTCTGCTTTTTTGTTTCGCA
GTGCATACGCCACAGATGCGAGCATTCTGTCGTGTCTTTCAAATGCCCGC
TGATCCGCATCGTCAACGCAGAAGCGACTGCTTGCCAACACAGCACTTCA
ATGAGCACATCCTGCTTCATTTGGGGTACCGTCTGCCAGCAGACACGTCG
TATCTGTGTGAACATCTCAATGCAGTCACTCACGTCATTCTGTGCGGCTC
CCCCCATCGCGCTCGCAAGATAGCACAAGCATTCTGCTCTGCAGCGCCGC
GCAACTTTTGTCGCACCGATCGGTATCTTGTGCTACAACCTGTGCCGTCC
GTGCTGATTGCGGCGCATGGCATTGGCATTGGCTCCATAGACGTGTTACT
GCACGAGATTTACCTGGCTCTAAACGCGGCGCAAGCCTCAAATTGGTGTT
TCATCCGACTCGGCAGTTGTGGCGGACTCGGAGTGGAGCCTGGCACTTTG
GTTGTCACACGTCGCACTCTAGCCGGAGATCTCACTCCCTCGCTGCGCAT
GTTTGTTTTGGGACAAGATGTGCGCTACCACGCGCAGCTTGACAACGCTC
TCACGCAGTCTCTTCTGCAAAGCGCGCAGCACATGTTCGCCGATAACTGC
ATCTCCGGTGACACGCTGTGCGCCGAAACGTTCCACATCGCACAAGGCAG
ACAGGACGGAGCGTTCGTTCCGTACGCTCAGCAGGACAAATTGAGCTTCT
TCGAACGATGTCGGGGCGCCGGCGTGGTCAACGTGGAGATGGAAAGTCTG
GCGCTGGCGGCGTTCTCCACCCGAATGAACGTTCCGAGCGCGGTTGTGTG
CGTGGTGCTGGTGGACCGACTGCAGTTCGAAACGCCCACCGACGACAGCA
AAACGCTGGCGGCGTTCGAACAGCGTTGCATCGAACTGGTGGTACGCTTT
GTGCAAGCGAACAGCGCATTGCACTCTCGTTAA back to topprotein sequence of Gcaud1751.t1 >Gcaud1751.t1 ID=Gcaud1751.t1|Name=Gcaud1751.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MPNASLARSSPSARRREGVFVARDAAGVSHHKPATVKRYSTNMILLFCFA
VHTPQMRAFCRVFQMPADPHRQRRSDCLPTQHFNEHILLHLGYRLPADTS
YLCEHLNAVTHVILCGSPHRARKIAQAFCSAAPRNFCRTDRYLVLQPVPS
VLIAAHGIGIGSIDVLLHEIYLALNAAQASNWCFIRLGSCGGLGVEPGTL
VVTRRTLAGDLTPSLRMFVLGQDVRYHAQLDNALTQSLLQSAQHMFADNC
ISGDTLCAETFHIAQGRQDGAFVPYAQQDKLSFFERCRGAGVVNVEMESL
ALAAFSTRMNVPSAVVCVVLVDRLQFETPTDDSKTLAAFEQRCIELVVRF
VQANSALHSR* back to topmRNA from alignment at NODE_1193_length_12810_cov_3.289960:923..2523- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1751.t1 ID=Gcaud1751.t1|Name=Gcaud1751.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1601bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:923..2523- (Gracilaria caudata M_176_S67 male)
ATGCCCAATGCATCATTGGCACGTAGCTCACCTTCCGCCAGACGCCGGGA
AGGTGTCTTTGTCGCAAGAGATGCTGCGGGTGTAAGTCATCACAAGCCGG
CAACGGTGAAGCGATACTCCAGTAAGTAGCATGTAATGCTTCGGCGGACT
GCAATCTGCTGTGCTTTTGAGCGCTGTGAAGAAGCACGCTTGTTCCGTTT
TTGTGCTGTTGCTGCAGCAGAAGAAAAGCGCTCACTCACCGCAGCGGCGT
GCGTGTGTGATTCATATCGCGCAGCCAATATGATTCTGCTTTTTTGTTTG
TGTGCTGCAGATTTGGGGACAAACGTCCACGCGCACTCTGCGCCGCACAG
AGTGTGTGGGTGACAGAACATACAGCCTGACGCGATTCGGGACGCGAATA
TTCATGTAAAGCACAAACTTGAGCCATCTTCCACTTCGCAATCTGTGCAC
GGTTGACGACACATACCATATTTATTGTTCACCTTCAGCGCAGTGCATAC
GCCACAGATGCGAGCATTCTGTGTAAGTTCTCAGCGATAACACGCAGTCG
TTTGGCGTTGGCCATCACATATAAACGCAAGAGCCTCTGTCGTCGCTACA
CCCCCATCAAAAACACGCCTATCCCGCCACCAACTCGCACACTGCTGCAA
CCTCTTCCAAACTAACAATCTGTTTCAAACTGTTGCCCATTTTCAAAGCG
TGTCTTTCAAATGCCCGCTGATCCGCATCGTCAACGCAGAAGCGACTGCT
TGCCAACACAGCACTTCAATGAGCACATCCTGCTTCATTTGGGGTACCGT
CTGCCAGCAGACACGTCGTATCTGTGTGAACATCTCAATGCAGTCACTCA
CGTCATTCTGTGCGGCTCCCCCCATCGCGCTCGCAAGATAGCACAAGCAT
TCTGCTCTGCAGCGCCGCGCAACTTTTGTCGCACCGATCGGTATCTTGTG
CTACAACCTGTGCCGTCCGTGCTGATTGCGGCGCATGGCATTGGCATTGG
CTCCATAGACGTGTTACTGCACGAGATTTACCTGGCTCTAAACGCGGCGC
AAGCCTCAAATTGGTGTTTCATCCGACTCGGCAGTTGTGGCGGACTCGGA
GTGGAGCCTGGCACTTTGGTTGTCACACGTCGCACTCTAGCCGGAGATCT
CACTCCCTCGCTGCGCATGTTTGTTTTGGGACAAGATGTGCGCTACCACG
CGCAGCTTGACAACGCTCTCACGCAGTCTCTTCTGCAAAGCGCGCAGCAC
ATGTTCGCCGATAACTGCATCTCCGGTGACACGCTGTGCGCCGAAACGTT
CCACATCGCACAAGGCAGACAGGACGGAGCGTTCGTTCCGTACGCTCAGC
AGGACAAATTGAGCTTCTTCGAACGATGTCGGGGCGCCGGCGTGGTCAAC
GTGGAGATGGAAAGTCTGGCGCTGGCGGCGTTCTCCACCCGAATGAACGT
TCCGAGCGCGGTTGTGTGCGTGGTGCTGGTGGACCGACTGCAGTTCGAAA
CGCCCACCGACGACAGCAAAACGCTGGCGGCGTTCGAACAGCGTTGCATC
GAACTGGTGGTACGCTTTGTGCAAGCGAACAGCGCATTGCACTCTCGTTA
A back to topCoding sequence (CDS) from alignment at NODE_1193_length_12810_cov_3.289960:923..2523- >Gcaud1751.t1 ID=Gcaud1751.t1|Name=Gcaud1751.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_1193_length_12810_cov_3.289960:923..2523- (Gracilaria caudata M_176_S67 male)
ATGCCCAATGCATCATTGGCACGTAGCTCACCTTCCGCCAGACGCCGGGA
AGGTGTCTTTGTCGCAAGAGATGCTGCGGGTGTAAGTCATCACAAGCCGG
CAACGGTGAAGCGATACTCCACCAATATGATTCTGCTTTTTTGTTTCGCA
GTGCATACGCCACAGATGCGAGCATTCTGTCGTGTCTTTCAAATGCCCGC
TGATCCGCATCGTCAACGCAGAAGCGACTGCTTGCCAACACAGCACTTCA
ATGAGCACATCCTGCTTCATTTGGGGTACCGTCTGCCAGCAGACACGTCG
TATCTGTGTGAACATCTCAATGCAGTCACTCACGTCATTCTGTGCGGCTC
CCCCCATCGCGCTCGCAAGATAGCACAAGCATTCTGCTCTGCAGCGCCGC
GCAACTTTTGTCGCACCGATCGGTATCTTGTGCTACAACCTGTGCCGTCC
GTGCTGATTGCGGCGCATGGCATTGGCATTGGCTCCATAGACGTGTTACT
GCACGAGATTTACCTGGCTCTAAACGCGGCGCAAGCCTCAAATTGGTGTT
TCATCCGACTCGGCAGTTGTGGCGGACTCGGAGTGGAGCCTGGCACTTTG
GTTGTCACACGTCGCACTCTAGCCGGAGATCTCACTCCCTCGCTGCGCAT
GTTTGTTTTGGGACAAGATGTGCGCTACCACGCGCAGCTTGACAACGCTC
TCACGCAGTCTCTTCTGCAAAGCGCGCAGCACATGTTCGCCGATAACTGC
ATCTCCGGTGACACGCTGTGCGCCGAAACGTTCCACATCGCACAAGGCAG
ACAGGACGGAGCGTTCGTTCCGTACGCTCAGCAGGACAAATTGAGCTTCT
TCGAACGATGTCGGGGCGCCGGCGTGGTCAACGTGGAGATGGAAAGTCTG
GCGCTGGCGGCGTTCTCCACCCGAATGAACGTTCCGAGCGCGGTTGTGTG
CGTGGTGCTGGTGGACCGACTGCAGTTCGAAACGCCCACCGACGACAGCA
AAACGCTGGCGGCGTTCGAACAGCGTTGCATCGAACTGGTGGTACGCTTT
GTGCAAGCGAACAGCGCATTGCACTCTCGTTAA back to top
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