Gcaud2017.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2017.t1
Unique Name	Gcaud2017.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_801_length_17760_cov_4.605977	contig	NODE_801_length_17760_cov_4.605977:14817..16796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706540.1
PFAMs	Amino_oxidase
Max annot lvl	2759\|Eukaryota
Evalue	7.05e-37
EggNOG OGs	COG1233@1\|root,2QSIC@2759\|Eukaryota
Description	Flavin containing amine oxidoreductase
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2017	Gcaud2017	Gracilaria caudata M_176_S67 male	gene	NODE_801_length_17760_cov_4.605977 14817..16796 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2017.t1.start1	Gcaud2017.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_801_length_17760_cov_4.605977 14817..14819 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2017.t1.CDS1	Gcaud2017.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_801_length_17760_cov_4.605977 14817..16796 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2017.t1.exon1	Gcaud2017.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_801_length_17760_cov_4.605977 14817..16796 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2017.t1	Gcaud2017.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_801_length_17760_cov_4.605977 14817..16796 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+
coding sequence from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+

mRNA sequence

>Gcaud2017.t1 ID=Gcaud2017.t1|Name=Gcaud2017.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp
MRYPSLSRFQLAPNHTQRLLDEHAQAVKLCGRHILSPHMEELRTCNQFEH
SPAGKVVALVELRNVRSTLTPFLSSLAAFTHSVIALDDHSTDGTRNELLT
SSHVELILNRTGEWRRDELADRQMLLEAGRRVGATHFVLLDYDEFISHNC
LPRLREQILDLKPGESMFIPWVEAWHTPFTQRVMKDDAHMNFLTRRQTVI
FADDRYFSYTAENSLSRTLSNNASLHVLRCPRSICAPPGAYKGASSRFEF
GSSVKVLHECRIVEMRFLNLHNVLLKSAWYEALGRVLGAEDGVTSGKMIT
RMFTSSDDSLQNEQGVFLADVERNWLAPDAQDVFEPFQWVESWRASELLQ
WIDTFGADRFHKLPVMSSIHFGELRLAMRRAMLQDTPLRFVPRRKRGVLV
FAMERASWRVLSRLLRAMRLEQIKVDRAQCAHADEQQRQYEQLKTQLEAM
KQQLMDGSHAQRVYVSFADVCEQCQRRLLLYATQQMANMHVLLIFGDWHG
ASAESALRKVSRQLAQQAGSHVHVIDMPLQAFGSFAALHWLCERVRRTLN
ARDDAVVSDEQLVAMAEGNHDEFEEMADGAGGEQLWPVARLVFSLNVGRS
GSRYLADVLGTADEPIVAVHEPRCPHAKCSGGGAMRMQDVRLDESYKERE
QIKLPMIRNS

spliced messenger RNA

>Gcaud2017.t1 ID=Gcaud2017.t1|Name=Gcaud2017.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATATCCGTCCTTGAGTCGCTTCCAGCTCGCGCCCAATCACACCCA
GCGCTTGCTGGATGAACACGCGCAGGCGGTCAAGTTGTGCGGGAGACATA
TTTTGTCTCCGCACATGGAGGAGCTTCGCACGTGCAATCAGTTTGAACAT
TCGCCAGCAGGAAAGGTGGTTGCGCTTGTGGAATTGCGCAACGTACGCTC
TACGCTGACGCCGTTTCTATCATCTTTGGCCGCATTCACACATTCCGTCA
TTGCGCTTGATGATCACAGCACCGACGGAACGCGCAACGAGCTGCTCACA
TCATCGCACGTGGAACTCATTCTCAACCGCACGGGCGAATGGCGCCGCGA
CGAACTGGCAGACCGTCAAATGCTACTGGAGGCGGGTCGACGCGTTGGTG
CAACGCACTTTGTACTGCTCGACTATGACGAGTTCATTTCGCACAACTGC
TTGCCACGCTTGCGCGAGCAAATTCTGGACTTGAAGCCCGGCGAAAGCAT
GTTCATACCGTGGGTAGAAGCCTGGCACACGCCGTTCACGCAGAGAGTGA
TGAAAGATGACGCGCACATGAACTTTCTCACCAGGCGACAGACGGTGATT
TTCGCGGACGATCGCTACTTTTCGTACACGGCGGAGAACTCGCTTTCGAG
GACGCTTTCTAACAACGCGTCGTTGCACGTTTTGCGATGCCCTAGAAGCA
TATGTGCGCCGCCGGGTGCATACAAGGGTGCCAGCTCTCGTTTTGAATTT
GGGTCATCTGTGAAGGTTTTGCATGAATGTCGCATCGTGGAAATGAGGTT
TTTGAACCTGCACAACGTGTTGCTCAAGAGCGCTTGGTACGAAGCTCTGG
GACGAGTACTGGGTGCTGAAGACGGCGTCACCAGTGGTAAAATGATAACT
CGCATGTTCACCAGCTCTGACGACTCTTTGCAGAACGAACAAGGCGTGTT
TCTCGCCGACGTGGAGCGCAACTGGCTCGCGCCTGACGCGCAAGACGTGT
TTGAGCCGTTTCAATGGGTGGAGAGTTGGAGAGCGTCCGAGCTTTTGCAG
TGGATTGACACGTTTGGCGCAGACCGATTTCACAAGTTGCCCGTGATGAG
CTCGATCCATTTTGGAGAACTGCGCTTGGCAATGCGACGTGCCATGCTGC
AAGACACGCCGCTTCGCTTCGTACCGCGACGCAAACGCGGTGTGCTGGTG
TTTGCCATGGAGAGGGCTTCATGGCGCGTACTCTCCCGATTGCTACGTGC
AATGCGCTTGGAGCAAATCAAAGTGGATCGCGCGCAATGTGCACACGCGG
ATGAGCAACAACGACAGTATGAGCAGTTGAAGACGCAACTGGAAGCAATG
AAACAACAGTTGATGGACGGCTCGCACGCGCAGCGCGTGTATGTGTCGTT
TGCAGATGTGTGCGAACAGTGTCAGCGTCGGCTGTTGCTGTATGCGACGC
AGCAAATGGCTAACATGCACGTGCTGCTGATTTTCGGCGACTGGCACGGC
GCAAGCGCAGAAAGCGCGCTTCGCAAAGTGTCACGCCAACTGGCGCAGCA
GGCGGGCAGCCATGTGCACGTGATCGACATGCCTCTGCAGGCGTTCGGTT
CGTTTGCAGCGTTGCATTGGCTGTGTGAGCGCGTGCGGCGCACATTGAAC
GCGCGCGACGATGCGGTGGTGTCGGACGAGCAGTTGGTGGCGATGGCGGA
GGGCAATCATGACGAGTTTGAGGAGATGGCAGACGGCGCGGGTGGTGAGC
AGCTGTGGCCGGTGGCGCGGTTGGTGTTCTCGCTGAATGTGGGACGCTCC
GGATCGAGGTACCTGGCGGACGTGCTGGGCACGGCGGACGAACCGATCGT
GGCTGTGCACGAGCCGCGCTGCCCGCACGCAAAGTGCTCCGGTGGGGGCG
CGATGCGCATGCAGGACGTGAGACTGGACGAGTCTTACAAGGAACGCGAG
CAAATCAAGCTGCCGATGATCCGAAACAGC

protein sequence of Gcaud2017.t1

>Gcaud2017.t1 ID=Gcaud2017.t1|Name=Gcaud2017.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=660bp
MRYPSLSRFQLAPNHTQRLLDEHAQAVKLCGRHILSPHMEELRTCNQFEH
SPAGKVVALVELRNVRSTLTPFLSSLAAFTHSVIALDDHSTDGTRNELLT
SSHVELILNRTGEWRRDELADRQMLLEAGRRVGATHFVLLDYDEFISHNC
LPRLREQILDLKPGESMFIPWVEAWHTPFTQRVMKDDAHMNFLTRRQTVI
FADDRYFSYTAENSLSRTLSNNASLHVLRCPRSICAPPGAYKGASSRFEF
GSSVKVLHECRIVEMRFLNLHNVLLKSAWYEALGRVLGAEDGVTSGKMIT
RMFTSSDDSLQNEQGVFLADVERNWLAPDAQDVFEPFQWVESWRASELLQ
WIDTFGADRFHKLPVMSSIHFGELRLAMRRAMLQDTPLRFVPRRKRGVLV
FAMERASWRVLSRLLRAMRLEQIKVDRAQCAHADEQQRQYEQLKTQLEAM
KQQLMDGSHAQRVYVSFADVCEQCQRRLLLYATQQMANMHVLLIFGDWHG
ASAESALRKVSRQLAQQAGSHVHVIDMPLQAFGSFAALHWLCERVRRTLN
ARDDAVVSDEQLVAMAEGNHDEFEEMADGAGGEQLWPVARLVFSLNVGRS
GSRYLADVLGTADEPIVAVHEPRCPHAKCSGGGAMRMQDVRLDESYKERE
QIKLPMIRNS

mRNA from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2017.t1 ID=Gcaud2017.t1|Name=Gcaud2017.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+ (Gracilaria caudata M_176_S67 male)
ATGCGATATCCGTCCTTGAGTCGCTTCCAGCTCGCGCCCAATCACACCCA
GCGCTTGCTGGATGAACACGCGCAGGCGGTCAAGTTGTGCGGGAGACATA
TTTTGTCTCCGCACATGGAGGAGCTTCGCACGTGCAATCAGTTTGAACAT
TCGCCAGCAGGAAAGGTGGTTGCGCTTGTGGAATTGCGCAACGTACGCTC
TACGCTGACGCCGTTTCTATCATCTTTGGCCGCATTCACACATTCCGTCA
TTGCGCTTGATGATCACAGCACCGACGGAACGCGCAACGAGCTGCTCACA
TCATCGCACGTGGAACTCATTCTCAACCGCACGGGCGAATGGCGCCGCGA
CGAACTGGCAGACCGTCAAATGCTACTGGAGGCGGGTCGACGCGTTGGTG
CAACGCACTTTGTACTGCTCGACTATGACGAGTTCATTTCGCACAACTGC
TTGCCACGCTTGCGCGAGCAAATTCTGGACTTGAAGCCCGGCGAAAGCAT
GTTCATACCGTGGGTAGAAGCCTGGCACACGCCGTTCACGCAGAGAGTGA
TGAAAGATGACGCGCACATGAACTTTCTCACCAGGCGACAGACGGTGATT
TTCGCGGACGATCGCTACTTTTCGTACACGGCGGAGAACTCGCTTTCGAG
GACGCTTTCTAACAACGCGTCGTTGCACGTTTTGCGATGCCCTAGAAGCA
TATGTGCGCCGCCGGGTGCATACAAGGGTGCCAGCTCTCGTTTTGAATTT
GGGTCATCTGTGAAGGTTTTGCATGAATGTCGCATCGTGGAAATGAGGTT
TTTGAACCTGCACAACGTGTTGCTCAAGAGCGCTTGGTACGAAGCTCTGG
GACGAGTACTGGGTGCTGAAGACGGCGTCACCAGTGGTAAAATGATAACT
CGCATGTTCACCAGCTCTGACGACTCTTTGCAGAACGAACAAGGCGTGTT
TCTCGCCGACGTGGAGCGCAACTGGCTCGCGCCTGACGCGCAAGACGTGT
TTGAGCCGTTTCAATGGGTGGAGAGTTGGAGAGCGTCCGAGCTTTTGCAG
TGGATTGACACGTTTGGCGCAGACCGATTTCACAAGTTGCCCGTGATGAG
CTCGATCCATTTTGGAGAACTGCGCTTGGCAATGCGACGTGCCATGCTGC
AAGACACGCCGCTTCGCTTCGTACCGCGACGCAAACGCGGTGTGCTGGTG
TTTGCCATGGAGAGGGCTTCATGGCGCGTACTCTCCCGATTGCTACGTGC
AATGCGCTTGGAGCAAATCAAAGTGGATCGCGCGCAATGTGCACACGCGG
ATGAGCAACAACGACAGTATGAGCAGTTGAAGACGCAACTGGAAGCAATG
AAACAACAGTTGATGGACGGCTCGCACGCGCAGCGCGTGTATGTGTCGTT
TGCAGATGTGTGCGAACAGTGTCAGCGTCGGCTGTTGCTGTATGCGACGC
AGCAAATGGCTAACATGCACGTGCTGCTGATTTTCGGCGACTGGCACGGC
GCAAGCGCAGAAAGCGCGCTTCGCAAAGTGTCACGCCAACTGGCGCAGCA
GGCGGGCAGCCATGTGCACGTGATCGACATGCCTCTGCAGGCGTTCGGTT
CGTTTGCAGCGTTGCATTGGCTGTGTGAGCGCGTGCGGCGCACATTGAAC
GCGCGCGACGATGCGGTGGTGTCGGACGAGCAGTTGGTGGCGATGGCGGA
GGGCAATCATGACGAGTTTGAGGAGATGGCAGACGGCGCGGGTGGTGAGC
AGCTGTGGCCGGTGGCGCGGTTGGTGTTCTCGCTGAATGTGGGACGCTCC
GGATCGAGGTACCTGGCGGACGTGCTGGGCACGGCGGACGAACCGATCGT
GGCTGTGCACGAGCCGCGCTGCCCGCACGCAAAGTGCTCCGGTGGGGGCG
CGATGCGCATGCAGGACGTGAGACTGGACGAGTCTTACAAGGAACGCGAG
CAAATCAAGCTGCCGATGATCCGAAACAGC

Coding sequence (CDS) from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+

>Gcaud2017.t1 ID=Gcaud2017.t1|Name=Gcaud2017.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1980bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:14817..16796+ (Gracilaria caudata M_176_S67 male)
ATGCGATATCCGTCCTTGAGTCGCTTCCAGCTCGCGCCCAATCACACCCA
GCGCTTGCTGGATGAACACGCGCAGGCGGTCAAGTTGTGCGGGAGACATA
TTTTGTCTCCGCACATGGAGGAGCTTCGCACGTGCAATCAGTTTGAACAT
TCGCCAGCAGGAAAGGTGGTTGCGCTTGTGGAATTGCGCAACGTACGCTC
TACGCTGACGCCGTTTCTATCATCTTTGGCCGCATTCACACATTCCGTCA
TTGCGCTTGATGATCACAGCACCGACGGAACGCGCAACGAGCTGCTCACA
TCATCGCACGTGGAACTCATTCTCAACCGCACGGGCGAATGGCGCCGCGA
CGAACTGGCAGACCGTCAAATGCTACTGGAGGCGGGTCGACGCGTTGGTG
CAACGCACTTTGTACTGCTCGACTATGACGAGTTCATTTCGCACAACTGC
TTGCCACGCTTGCGCGAGCAAATTCTGGACTTGAAGCCCGGCGAAAGCAT
GTTCATACCGTGGGTAGAAGCCTGGCACACGCCGTTCACGCAGAGAGTGA
TGAAAGATGACGCGCACATGAACTTTCTCACCAGGCGACAGACGGTGATT
TTCGCGGACGATCGCTACTTTTCGTACACGGCGGAGAACTCGCTTTCGAG
GACGCTTTCTAACAACGCGTCGTTGCACGTTTTGCGATGCCCTAGAAGCA
TATGTGCGCCGCCGGGTGCATACAAGGGTGCCAGCTCTCGTTTTGAATTT
GGGTCATCTGTGAAGGTTTTGCATGAATGTCGCATCGTGGAAATGAGGTT
TTTGAACCTGCACAACGTGTTGCTCAAGAGCGCTTGGTACGAAGCTCTGG
GACGAGTACTGGGTGCTGAAGACGGCGTCACCAGTGGTAAAATGATAACT
CGCATGTTCACCAGCTCTGACGACTCTTTGCAGAACGAACAAGGCGTGTT
TCTCGCCGACGTGGAGCGCAACTGGCTCGCGCCTGACGCGCAAGACGTGT
TTGAGCCGTTTCAATGGGTGGAGAGTTGGAGAGCGTCCGAGCTTTTGCAG
TGGATTGACACGTTTGGCGCAGACCGATTTCACAAGTTGCCCGTGATGAG
CTCGATCCATTTTGGAGAACTGCGCTTGGCAATGCGACGTGCCATGCTGC
AAGACACGCCGCTTCGCTTCGTACCGCGACGCAAACGCGGTGTGCTGGTG
TTTGCCATGGAGAGGGCTTCATGGCGCGTACTCTCCCGATTGCTACGTGC
AATGCGCTTGGAGCAAATCAAAGTGGATCGCGCGCAATGTGCACACGCGG
ATGAGCAACAACGACAGTATGAGCAGTTGAAGACGCAACTGGAAGCAATG
AAACAACAGTTGATGGACGGCTCGCACGCGCAGCGCGTGTATGTGTCGTT
TGCAGATGTGTGCGAACAGTGTCAGCGTCGGCTGTTGCTGTATGCGACGC
AGCAAATGGCTAACATGCACGTGCTGCTGATTTTCGGCGACTGGCACGGC
GCAAGCGCAGAAAGCGCGCTTCGCAAAGTGTCACGCCAACTGGCGCAGCA
GGCGGGCAGCCATGTGCACGTGATCGACATGCCTCTGCAGGCGTTCGGTT
CGTTTGCAGCGTTGCATTGGCTGTGTGAGCGCGTGCGGCGCACATTGAAC
GCGCGCGACGATGCGGTGGTGTCGGACGAGCAGTTGGTGGCGATGGCGGA
GGGCAATCATGACGAGTTTGAGGAGATGGCAGACGGCGCGGGTGGTGAGC
AGCTGTGGCCGGTGGCGCGGTTGGTGTTCTCGCTGAATGTGGGACGCTCC
GGATCGAGGTACCTGGCGGACGTGCTGGGCACGGCGGACGAACCGATCGT
GGCTGTGCACGAGCCGCGCTGCCCGCACGCAAAGTGCTCCGGTGGGGGCG
CGATGCGCATGCAGGACGTGAGACTGGACGAGTCTTACAAGGAACGCGAG
CAAATCAAGCTGCCGATGATCCGAAACAGC