Gcaud2013.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2013.t1
Unique Name	Gcaud2013.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	287

Homology

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BLAST of Gcaud2013.t1 vs. uniprot
Match: A0A2V3IJB0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJB0_9FLOR)

HSP 1 Score: 268 bits (686), Expect = 1.120e-84
Identity = 143/285 (50.18%), Postives = 187/285 (65.61%), Query Frame = 0

Query:    1 MSIDSKTLAVADSLNTISIFTVGTSDEKLTLDCIRPASSTITALAITEGGSTVLFVEKCAPAILKMFNTSDPTALHEISPVHERDEARVVSCSISSHFILASFYNKRTSTRAMALWRRAHNKIDSELTQVFAWNSEQVGSSQTHLYSPLYVTEWHTQGDHCAYNAEVAYHVDKKLVYHPEVGNEECVRPSCILLDRKPIAIRIDQSHGRDCVYILSENQLRIYRVNRRSQLCLVDCVDFGNEICSSAVCGIWKGRRNRHVTVARIVNGQVMVFRAQLPNGVRFQI 285
            MSI++  L VADS N+IS+F+  ++ E+LT   I  ASS I ALA+TEGG TVLF E+ +PA+L+MF+  +P    E+SP+   + A+VVSC+ISSHFI+ASF  + +S R MALWRR HN IDSELT +  W    V      LY P YVTE H +     Y A VAY+VD  L YHP++          +     P+ IR+DQSH  D VY++  +++ IY+V     LCL D V F +++C+SAVCGIWKGR NR+VTVARIVNG V VF+A LP GVRF +
Sbjct:  126 MSINAHRLIVADSSNSISVFSTPSASERLTWTGIHRASSRILALAVTEGGHTVLFAERRSPAVLQMFSVDNPEVTTEVSPIEGFERAQVVSCAISSHFIVASFCIQESSRRTMALWRRKHNTIDSELTLICVWPLHSVSGDNNDLYRPTYVTERHHRRSSQVY-AAVAYNVDNTLCYHPKIDERGHRETISLSHSGNPVGIRVDQSHDDDYVYLVFRDKICIYQVTSNGNLCLSDSVSFTDQLCNSAVCGIWKGRINRNVTVARIVNGGVHVFQAALPRGVRFNM 409

The following BLAST results are available for this feature:

BLAST of Gcaud2013.t1 vs. uniprot

BLAST of Gcaud2013.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IJB0_9FLOR	1.120e-84	50.18	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	101908	Putative isomerase YbhE	coord: 4..278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_801_length_17760_cov_4.605977	contig	NODE_801_length_17760_cov_4.605977:3906..4766 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2013.t1	Gcaud2013.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_801_length_17760_cov_4.605977 3906..4766 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2013.t1 ID=Gcaud2013.t1|Name=Gcaud2013.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MSIDSKTLAVADSLNTISIFTVGTSDEKLTLDCIRPASSTITALAITEGG
STVLFVEKCAPAILKMFNTSDPTALHEISPVHERDEARVVSCSISSHFIL
ASFYNKRTSTRAMALWRRAHNKIDSELTQVFAWNSEQVGSSQTHLYSPLY
VTEWHTQGDHCAYNAEVAYHVDKKLVYHPEVGNEECVRPSCILLDRKPIA
IRIDQSHGRDCVYILSENQLRIYRVNRRSQLCLVDCVDFGNEICSSAVCG
IWKGRRNRHVTVARIVNGQVMVFRAQLPNGVRFQIP*