Gcaud2015.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2015.t1
Unique NameGcaud2015.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_801_length_17760_cov_4.605977contigNODE_801_length_17760_cov_4.605977:12061..12880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706300.1
Preferred namePSMA4
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K02728,ko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03050,ko03410,ko03420,ko03430,map03030,map03050,map03410,map03420,map03430
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0001673,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080129,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Evalue6.78e-121
EggNOG OGsCOG0638@1|root,KOG0178@2759|Eukaryota
EC3.4.25.1,6.5.1.1,6.5.1.6,6.5.1.7
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03032,ko03051,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2015Gcaud2015Gracilaria caudata M_176_S67 malegeneNODE_801_length_17760_cov_4.605977 12061..12880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2015.t1Gcaud2015.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_801_length_17760_cov_4.605977 12061..12880 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2015.t1.start1Gcaud2015.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_801_length_17760_cov_4.605977 12061..12063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2015.t1.CDS1Gcaud2015.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_801_length_17760_cov_4.605977 12061..12089 +
Gcaud2015.t1.CDS2Gcaud2015.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_801_length_17760_cov_4.605977 12160..12880 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2015.t1.exon1Gcaud2015.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_801_length_17760_cov_4.605977 12061..12089 +
Gcaud2015.t1.exon2Gcaud2015.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_801_length_17760_cov_4.605977 12160..12880 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2015.t1.intron1Gcaud2015.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_801_length_17760_cov_4.605977 12090..12159 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2015.t1.stop1Gcaud2015.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_801_length_17760_cov_4.605977 12878..12880 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2015.t1 ID=Gcaud2015.t1|Name=Gcaud2015.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
MARRYDSRTTTFSPEGRLFQVEYAMEAIGNAGAAVGVLSTEGVVLAAEKK
TASKLLDTVKRSEKMYKIDSHIMCAVAGITADANILINQARLAAQRYAFS
YQEPIPVEHLLQQICDTKQTYTQFGGLRPFGVSFLFAGWDVHYGFQLYQS
DPSGNYGGWKATSIGANSNAASSILKSDYKDDMKLKDALSLAIKVLTKTM
DSATLSPEKLEISTVCLKDGSVVHHQLTDKELESLLNTAGVLASDKPDA*
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spliced messenger RNA

>Gcaud2015.t1 ID=Gcaud2015.t1|Name=Gcaud2015.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:12061..12880+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGACGATATGATTCAAGAACAACAACATTTTCGCCGGAAGGGCG
TCTCTTTCAAGTGGAGTATGCGATGGAAGCTATCGGTAATGCAGGCGCCG
CGGTTGGGGTCCTCTCCACTGAGGGAGTTGTCTTGGCCGCTGAGAAGAAA
ACCGCTTCCAAGCTTTTGGACACCGTGAAGCGATCAGAGAAGATGTACAA
GATTGATTCGCATATAATGTGTGCAGTAGCCGGAATCACGGCGGACGCCA
ACATTCTCATCAATCAAGCCCGACTCGCTGCTCAGAGGTACGCCTTTTCG
TACCAAGAACCAATCCCAGTTGAGCATCTTTTGCAACAGATTTGCGATAC
CAAGCAGACTTATACCCAGTTTGGAGGGCTACGACCTTTTGGAGTAAGCT
TCTTATTTGCTGGATGGGATGTGCATTACGGTTTCCAGCTTTACCAGAGT
GATCCGAGTGGTAACTATGGCGGCTGGAAGGCTACAAGCATTGGAGCAAA
CTCGAACGCCGCGAGCAGCATTTTGAAGAGCGATTACAAAGATGACATGA
AGCTGAAGGATGCGTTGTCACTAGCGATCAAAGTGCTGACAAAGACTATG
GACAGTGCGACTTTGTCTCCTGAGAAGCTCGAAATTTCAACAGTGTGTCT
TAAGGACGGCAGCGTTGTCCATCATCAATTAACAGATAAGGAACTCGAAT
CCTTGCTTAACACAGCTGGTGTTTTGGCGTCTGACAAGCCTGACGCGTAG
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protein sequence of Gcaud2015.t1

>Gcaud2015.t1 ID=Gcaud2015.t1|Name=Gcaud2015.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
MARRYDSRTTTFSPEGRLFQVEYAMEAIGNAGAAVGVLSTEGVVLAAEKK
TASKLLDTVKRSEKMYKIDSHIMCAVAGITADANILINQARLAAQRYAFS
YQEPIPVEHLLQQICDTKQTYTQFGGLRPFGVSFLFAGWDVHYGFQLYQS
DPSGNYGGWKATSIGANSNAASSILKSDYKDDMKLKDALSLAIKVLTKTM
DSATLSPEKLEISTVCLKDGSVVHHQLTDKELESLLNTAGVLASDKPDA*
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mRNA from alignment at NODE_801_length_17760_cov_4.605977:12061..12880+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2015.t1 ID=Gcaud2015.t1|Name=Gcaud2015.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=820bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:12061..12880+ (Gracilaria caudata M_176_S67 male)
ATGGCTCGACGATATGATTCAAGAACAACGTAAGCTACAACAACAGAACT
TTTAGAACACGTTTTGCAACAGCGTGATTGATTCTAACGAACCCCATAGA
ACATTTTCGCCGGAAGGGCGTCTCTTTCAAGTGGAGTATGCGATGGAAGC
TATCGGTAATGCAGGCGCCGCGGTTGGGGTCCTCTCCACTGAGGGAGTTG
TCTTGGCCGCTGAGAAGAAAACCGCTTCCAAGCTTTTGGACACCGTGAAG
CGATCAGAGAAGATGTACAAGATTGATTCGCATATAATGTGTGCAGTAGC
CGGAATCACGGCGGACGCCAACATTCTCATCAATCAAGCCCGACTCGCTG
CTCAGAGGTACGCCTTTTCGTACCAAGAACCAATCCCAGTTGAGCATCTT
TTGCAACAGATTTGCGATACCAAGCAGACTTATACCCAGTTTGGAGGGCT
ACGACCTTTTGGAGTAAGCTTCTTATTTGCTGGATGGGATGTGCATTACG
GTTTCCAGCTTTACCAGAGTGATCCGAGTGGTAACTATGGCGGCTGGAAG
GCTACAAGCATTGGAGCAAACTCGAACGCCGCGAGCAGCATTTTGAAGAG
CGATTACAAAGATGACATGAAGCTGAAGGATGCGTTGTCACTAGCGATCA
AAGTGCTGACAAAGACTATGGACAGTGCGACTTTGTCTCCTGAGAAGCTC
GAAATTTCAACAGTGTGTCTTAAGGACGGCAGCGTTGTCCATCATCAATT
AACAGATAAGGAACTCGAATCCTTGCTTAACACAGCTGGTGTTTTGGCGT
CTGACAAGCCTGACGCGTAG
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Coding sequence (CDS) from alignment at NODE_801_length_17760_cov_4.605977:12061..12880+

>Gcaud2015.t1 ID=Gcaud2015.t1|Name=Gcaud2015.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=750bp|location=Sequence derived from alignment at NODE_801_length_17760_cov_4.605977:12061..12880+ (Gracilaria caudata M_176_S67 male)
ATGGCTCGACGATATGATTCAAGAACAACAACATTTTCGCCGGAAGGGCG
TCTCTTTCAAGTGGAGTATGCGATGGAAGCTATCGGTAATGCAGGCGCCG
CGGTTGGGGTCCTCTCCACTGAGGGAGTTGTCTTGGCCGCTGAGAAGAAA
ACCGCTTCCAAGCTTTTGGACACCGTGAAGCGATCAGAGAAGATGTACAA
GATTGATTCGCATATAATGTGTGCAGTAGCCGGAATCACGGCGGACGCCA
ACATTCTCATCAATCAAGCCCGACTCGCTGCTCAGAGGTACGCCTTTTCG
TACCAAGAACCAATCCCAGTTGAGCATCTTTTGCAACAGATTTGCGATAC
CAAGCAGACTTATACCCAGTTTGGAGGGCTACGACCTTTTGGAGTAAGCT
TCTTATTTGCTGGATGGGATGTGCATTACGGTTTCCAGCTTTACCAGAGT
GATCCGAGTGGTAACTATGGCGGCTGGAAGGCTACAAGCATTGGAGCAAA
CTCGAACGCCGCGAGCAGCATTTTGAAGAGCGATTACAAAGATGACATGA
AGCTGAAGGATGCGTTGTCACTAGCGATCAAAGTGCTGACAAAGACTATG
GACAGTGCGACTTTGTCTCCTGAGAAGCTCGAAATTTCAACAGTGTGTCT
TAAGGACGGCAGCGTTGTCCATCATCAATTAACAGATAAGGAACTCGAAT
CCTTGCTTAACACAGCTGGTGTTTTGGCGTCTGACAAGCCTGACGCGTAG
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