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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LEZ6 |
| PFAMs | Anoct_dimer,Anoctamin,ERK-JNK_inhib |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K19327,ko:K19480,ko:K19497,ko:K19501 |
| KEGG TC | 1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3 |
| KEGG Pathway | ko04740,map04740 |
| Evalue | 3.59e-58 |
| EggNOG OGs | KOG2514@1|root,KOG2514@2759|Eukaryota |
| Description | intracellular chloride channel activity |
| COG category | U |
| BRITE | ko00000,ko00001,ko04040 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1757.t1.stop1 | Gcaud1757.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_800_length_17764_cov_4.050076 290..292 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1757.t1.intron1 | Gcaud1757.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_800_length_17764_cov_4.050076 1921..2012 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1757.t1.start1 | Gcaud1757.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_800_length_17764_cov_4.050076 2902..2904 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1757.t1 ID=Gcaud1757.t1|Name=Gcaud1757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=841bp MSTQPSASSSRARSRASSGTADGPSRLPSRANTVYFDALGIPFDAEAREQ FEQQSAAGSADAPEPIQPESERRPSWGWDYVFVFRLPRALKRQLEAEAAA GADDHVPPEEAVAGKDGDQEGDSDGEDEEEDGKSAQRVRERVEILARLSS AGFVYSQLLVPSEQLIFLRLSLPTPALKQAAQHVGMELRLKPQFGGGYLE FEPHREHVYVNHELEKSTGCYFAPADRSLLILNVLQSKEHWGCGLNIERL LYEEKVEQAFALHSVPEKKRLVREVIWRQWWNPIREPPFHEIKDYLGARV TFYFVFVSFYARRLLPLGLLSIPVFVVYRAVRNLEALVIVRWVFSIGLVL WTTYFLENWKRRTAMVNTKWGLHDYQEDTMDDTRVQFEGEHRYGFYSKGG FVPLDDLAMYSDYCLPSESNSRISSSSKKLEVEAMGERQGSRVLLPRNPY QDPRKKRNALLVSTGVTAVFVVIVGALTFLLLWFRNEIVTWSKQRVSNDF ASAVPGVLNGLLTFVFDSIWRSVSMWLTRRENHRTNQHFENSLIYKRFAF MFVSNYISLFYIAFVRKYLENTCPAGIIPGVERDCMRELESQMLSLVLTK ATIGQVMEIGIPWITSTLKQLNARIRSSKRGQQTAQHGGYNRYVAESKLS KYHSTMEDYSELVMQFGFLVLFGVAFPLAAVVNIVNNTLEVRTDAYKLLA LSQRVDADDAADIGAWYAILQLLNVLSVWCNAALLIFTSESLDLLLPSEA DRWQRVLYRVTAFFVLEHVLLGIKAAAAALIRDVPNKTRRALARQSFDIA RHFDLRWREHFRGAPLLRLAPEQLRRGARHARVFDAPSHG* back to topspliced messenger RNA >Gcaud1757.t1 ID=Gcaud1757.t1|Name=Gcaud1757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2523bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:290..2904- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTACGCAGCCCAGCGCGTCGTCAAGTCGCGCCCGCTCTCGTGCCTC GTCGGGCACCGCAGACGGCCCCTCCCGCTTGCCCTCCCGCGCCAACACCG TGTACTTCGACGCGCTCGGCATCCCGTTTGACGCCGAAGCGCGCGAGCAA TTCGAGCAGCAGAGCGCTGCGGGCAGCGCCGATGCGCCCGAACCCATACA GCCGGAGAGCGAGCGCCGCCCGAGCTGGGGCTGGGATTATGTGTTTGTGT TCCGTTTGCCGCGCGCCCTTAAGAGACAACTGGAGGCGGAGGCCGCCGCA GGCGCGGACGATCACGTGCCGCCTGAGGAAGCCGTCGCGGGTAAGGACGG CGACCAGGAGGGCGATAGCGATGGCGAAGACGAGGAGGAGGACGGAAAGA GCGCGCAGCGAGTACGCGAACGAGTGGAGATTCTCGCGCGACTGAGCAGT GCGGGGTTTGTGTACTCGCAACTACTCGTTCCTTCTGAACAGCTTATTTT TCTTCGATTGTCGTTGCCGACGCCGGCGCTCAAACAGGCCGCGCAGCACG TCGGCATGGAGCTGCGGCTCAAGCCGCAGTTCGGCGGCGGCTATCTGGAA TTTGAGCCGCATCGCGAGCATGTATATGTTAACCATGAGCTGGAGAAGAG TACCGGCTGTTATTTTGCCCCGGCCGACCGCTCGTTGCTCATTTTGAACG TGCTGCAGTCGAAGGAGCACTGGGGCTGCGGCTTGAATATTGAGCGATTG CTTTACGAAGAAAAGGTTGAACAGGCGTTTGCGCTGCATTCGGTGCCGGA GAAAAAACGACTTGTGAGGGAGGTCATCTGGAGGCAGTGGTGGAATCCTA TCCGAGAGCCTCCGTTCCATGAGATTAAGGACTATCTCGGAGCCCGTGTG ACGTTTTACTTTGTGTTTGTGAGCTTTTACGCACGACGCTTGCTACCGCT CGGACTGTTGTCTATCCCAGTGTTTGTTGTGTATCGCGCAGTGAGAAACC TCGAGGCGTTAGTAATCGTGCGCTGGGTGTTTTCCATCGGACTGGTCTTA TGGACCACGTACTTCTTGGAGAACTGGAAGAGACGAACGGCCATGGTGAA TACCAAATGGGGTCTGCATGACTACCAGGAGGATACCATGGACGACACTC GCGTGCAATTCGAGGGCGAACATCGCTACGGATTCTACAGCAAGGGCGGT TTCGTGCCGCTAGACGATCTAGCCATGTACAGCGACTACTGCCTGCCATC CGAGAGCAACAGTCGCATCAGCAGCAGCAGCAAGAAATTAGAGGTGGAAG CCATGGGCGAGCGTCAGGGAAGCAGAGTATTACTGCCTCGAAACCCTTAC CAAGACCCGCGCAAGAAACGGAACGCACTGCTGGTTTCTACGGGTGTGAC GGCGGTTTTCGTGGTGATTGTAGGCGCGTTGACGTTCCTGTTGCTGTGGT TTCGAAACGAGATTGTGACTTGGAGCAAGCAACGCGTTTCAAACGACTTT GCGAGCGCGGTGCCTGGTGTACTGAACGGATTGCTTACGTTTGTGTTCGA CTCGATTTGGAGATCGGTTTCGATGTGGCTGACAAGACGGGAGAATCATC GCACGAACCAACACTTCGAGAACAGCCTCATCTACAAGCGATTTGCGTTC ATGTTTGTGTCAAACTATATCTCGCTGTTCTACATCGCGTTCGTGCGCAA GTACTTGGAAAACACGTGCCCAGCCGGTATCATCCCAGGGGTGGAGAGAG ACTGCATGCGCGAGCTAGAGAGCCAGATGCTGTCACTGGTACTGACCAAA GCGACAATTGGGCAAGTGATGGAAATTGGAATTCCGTGGATAACGAGCAC ATTGAAGCAACTGAACGCGCGTATACGCTCGTCCAAACGCGGACAACAAA CGGCACAGCACGGCGGATACAACCGGTATGTGGCGGAGAGCAAACTGAGC AAATACCACTCGACGATGGAGGACTACAGCGAGCTGGTGATGCAGTTCGG GTTCCTGGTGTTGTTCGGGGTGGCGTTCCCGCTGGCAGCGGTGGTGAACA TCGTGAACAACACGCTGGAGGTGCGCACAGACGCGTACAAGTTGCTGGCG CTGTCGCAGCGAGTGGACGCGGACGACGCGGCGGACATCGGCGCGTGGTA CGCCATCTTGCAGCTGCTGAACGTGCTGTCGGTGTGGTGCAACGCGGCGC TGCTGATCTTCACGTCGGAGTCGCTGGACTTGTTGCTACCGAGCGAGGCG GACCGCTGGCAGCGCGTGCTGTACCGCGTGACGGCGTTCTTCGTGCTGGA GCACGTGCTGCTGGGCATCAAGGCGGCGGCGGCGGCGCTGATCCGAGACG TGCCCAACAAGACGCGTCGCGCGCTGGCGCGCCAGTCTTTCGATATTGCG CGCCACTTCGATTTGCGCTGGCGGGAGCACTTTCGCGGCGCGCCTCTGCT GCGACTGGCACCCGAGCAGCTGCGGCGTGGCGCGCGTCACGCGCGCGTGT TCGACGCGCCGTCTCACGGCTGA back to topprotein sequence of Gcaud1757.t1 >Gcaud1757.t1 ID=Gcaud1757.t1|Name=Gcaud1757.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=841bp
MSTQPSASSSRARSRASSGTADGPSRLPSRANTVYFDALGIPFDAEAREQ FEQQSAAGSADAPEPIQPESERRPSWGWDYVFVFRLPRALKRQLEAEAAA GADDHVPPEEAVAGKDGDQEGDSDGEDEEEDGKSAQRVRERVEILARLSS AGFVYSQLLVPSEQLIFLRLSLPTPALKQAAQHVGMELRLKPQFGGGYLE FEPHREHVYVNHELEKSTGCYFAPADRSLLILNVLQSKEHWGCGLNIERL LYEEKVEQAFALHSVPEKKRLVREVIWRQWWNPIREPPFHEIKDYLGARV TFYFVFVSFYARRLLPLGLLSIPVFVVYRAVRNLEALVIVRWVFSIGLVL WTTYFLENWKRRTAMVNTKWGLHDYQEDTMDDTRVQFEGEHRYGFYSKGG FVPLDDLAMYSDYCLPSESNSRISSSSKKLEVEAMGERQGSRVLLPRNPY QDPRKKRNALLVSTGVTAVFVVIVGALTFLLLWFRNEIVTWSKQRVSNDF ASAVPGVLNGLLTFVFDSIWRSVSMWLTRRENHRTNQHFENSLIYKRFAF MFVSNYISLFYIAFVRKYLENTCPAGIIPGVERDCMRELESQMLSLVLTK ATIGQVMEIGIPWITSTLKQLNARIRSSKRGQQTAQHGGYNRYVAESKLS KYHSTMEDYSELVMQFGFLVLFGVAFPLAAVVNIVNNTLEVRTDAYKLLA LSQRVDADDAADIGAWYAILQLLNVLSVWCNAALLIFTSESLDLLLPSEA DRWQRVLYRVTAFFVLEHVLLGIKAAAAALIRDVPNKTRRALARQSFDIA RHFDLRWREHFRGAPLLRLAPEQLRRGARHARVFDAPSHG* back to topmRNA from alignment at NODE_800_length_17764_cov_4.050076:290..2904- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1757.t1 ID=Gcaud1757.t1|Name=Gcaud1757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2615bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:290..2904- (Gracilaria caudata M_176_S67 male) ATGAGTACGCAGCCCAGCGCGTCGTCAAGTCGCGCCCGCTCTCGTGCCTC
GTCGGGCACCGCAGACGGCCCCTCCCGCTTGCCCTCCCGCGCCAACACCG
TGTACTTCGACGCGCTCGGCATCCCGTTTGACGCCGAAGCGCGCGAGCAA
TTCGAGCAGCAGAGCGCTGCGGGCAGCGCCGATGCGCCCGAACCCATACA
GCCGGAGAGCGAGCGCCGCCCGAGCTGGGGCTGGGATTATGTGTTTGTGT
TCCGTTTGCCGCGCGCCCTTAAGAGACAACTGGAGGCGGAGGCCGCCGCA
GGCGCGGACGATCACGTGCCGCCTGAGGAAGCCGTCGCGGGTAAGGACGG
CGACCAGGAGGGCGATAGCGATGGCGAAGACGAGGAGGAGGACGGAAAGA
GCGCGCAGCGAGTACGCGAACGAGTGGAGATTCTCGCGCGACTGAGCAGT
GCGGGGTTTGTGTACTCGCAACTACTCGTTCCTTCTGAACAGCTTATTTT
TCTTCGATTGTCGTTGCCGACGCCGGCGCTCAAACAGGCCGCGCAGCACG
TCGGCATGGAGCTGCGGCTCAAGCCGCAGTTCGGCGGCGGCTATCTGGAA
TTTGAGCCGCATCGCGAGCATGTATATGTTAACCATGAGCTGGAGAAGAG
TACCGGCTGTTATTTTGCCCCGGCCGACCGCTCGTTGCTCATTTTGAACG
TGCTGCAGTCGAAGGAGCACTGGGGCTGCGGCTTGAATATTGAGCGATTG
CTTTACGAAGAAAAGGTTGAACAGGCGTTTGCGCTGCATTCGGTGCCGGA
GAAAAAACGACTTGTGAGGGAGGTCATCTGGAGGCAGTGGTGGAATCCTA
TCCGAGAGCCTCCGTTCCATGAGATTAAGGACTATCTCGGAGGTAAGTGG
CTTCACCTGTTCTCATGTTGGGCGAGACGCGCCGTCTGCAGACAACTGAC
CATTGCTGATGGGCGGGCAATTCTTTTGGCGCAGCCCGTGTGACGTTTTA
CTTTGTGTTTGTGAGCTTTTACGCACGACGCTTGCTACCGCTCGGACTGT
TGTCTATCCCAGTGTTTGTTGTGTATCGCGCAGTGAGAAACCTCGAGGCG
TTAGTAATCGTGCGCTGGGTGTTTTCCATCGGACTGGTCTTATGGACCAC
GTACTTCTTGGAGAACTGGAAGAGACGAACGGCCATGGTGAATACCAAAT
GGGGTCTGCATGACTACCAGGAGGATACCATGGACGACACTCGCGTGCAA
TTCGAGGGCGAACATCGCTACGGATTCTACAGCAAGGGCGGTTTCGTGCC
GCTAGACGATCTAGCCATGTACAGCGACTACTGCCTGCCATCCGAGAGCA
ACAGTCGCATCAGCAGCAGCAGCAAGAAATTAGAGGTGGAAGCCATGGGC
GAGCGTCAGGGAAGCAGAGTATTACTGCCTCGAAACCCTTACCAAGACCC
GCGCAAGAAACGGAACGCACTGCTGGTTTCTACGGGTGTGACGGCGGTTT
TCGTGGTGATTGTAGGCGCGTTGACGTTCCTGTTGCTGTGGTTTCGAAAC
GAGATTGTGACTTGGAGCAAGCAACGCGTTTCAAACGACTTTGCGAGCGC
GGTGCCTGGTGTACTGAACGGATTGCTTACGTTTGTGTTCGACTCGATTT
GGAGATCGGTTTCGATGTGGCTGACAAGACGGGAGAATCATCGCACGAAC
CAACACTTCGAGAACAGCCTCATCTACAAGCGATTTGCGTTCATGTTTGT
GTCAAACTATATCTCGCTGTTCTACATCGCGTTCGTGCGCAAGTACTTGG
AAAACACGTGCCCAGCCGGTATCATCCCAGGGGTGGAGAGAGACTGCATG
CGCGAGCTAGAGAGCCAGATGCTGTCACTGGTACTGACCAAAGCGACAAT
TGGGCAAGTGATGGAAATTGGAATTCCGTGGATAACGAGCACATTGAAGC
AACTGAACGCGCGTATACGCTCGTCCAAACGCGGACAACAAACGGCACAG
CACGGCGGATACAACCGGTATGTGGCGGAGAGCAAACTGAGCAAATACCA
CTCGACGATGGAGGACTACAGCGAGCTGGTGATGCAGTTCGGGTTCCTGG
TGTTGTTCGGGGTGGCGTTCCCGCTGGCAGCGGTGGTGAACATCGTGAAC
AACACGCTGGAGGTGCGCACAGACGCGTACAAGTTGCTGGCGCTGTCGCA
GCGAGTGGACGCGGACGACGCGGCGGACATCGGCGCGTGGTACGCCATCT
TGCAGCTGCTGAACGTGCTGTCGGTGTGGTGCAACGCGGCGCTGCTGATC
TTCACGTCGGAGTCGCTGGACTTGTTGCTACCGAGCGAGGCGGACCGCTG
GCAGCGCGTGCTGTACCGCGTGACGGCGTTCTTCGTGCTGGAGCACGTGC
TGCTGGGCATCAAGGCGGCGGCGGCGGCGCTGATCCGAGACGTGCCCAAC
AAGACGCGTCGCGCGCTGGCGCGCCAGTCTTTCGATATTGCGCGCCACTT
CGATTTGCGCTGGCGGGAGCACTTTCGCGGCGCGCCTCTGCTGCGACTGG
CACCCGAGCAGCTGCGGCGTGGCGCGCGTCACGCGCGCGTGTTCGACGCG
CCGTCTCACGGCTGA back to topCoding sequence (CDS) from alignment at NODE_800_length_17764_cov_4.050076:290..2904- >Gcaud1757.t1 ID=Gcaud1757.t1|Name=Gcaud1757.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2523bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:290..2904- (Gracilaria caudata M_176_S67 male) ATGAGTACGCAGCCCAGCGCGTCGTCAAGTCGCGCCCGCTCTCGTGCCTC GTCGGGCACCGCAGACGGCCCCTCCCGCTTGCCCTCCCGCGCCAACACCG TGTACTTCGACGCGCTCGGCATCCCGTTTGACGCCGAAGCGCGCGAGCAA TTCGAGCAGCAGAGCGCTGCGGGCAGCGCCGATGCGCCCGAACCCATACA GCCGGAGAGCGAGCGCCGCCCGAGCTGGGGCTGGGATTATGTGTTTGTGT TCCGTTTGCCGCGCGCCCTTAAGAGACAACTGGAGGCGGAGGCCGCCGCA GGCGCGGACGATCACGTGCCGCCTGAGGAAGCCGTCGCGGGTAAGGACGG CGACCAGGAGGGCGATAGCGATGGCGAAGACGAGGAGGAGGACGGAAAGA GCGCGCAGCGAGTACGCGAACGAGTGGAGATTCTCGCGCGACTGAGCAGT GCGGGGTTTGTGTACTCGCAACTACTCGTTCCTTCTGAACAGCTTATTTT TCTTCGATTGTCGTTGCCGACGCCGGCGCTCAAACAGGCCGCGCAGCACG TCGGCATGGAGCTGCGGCTCAAGCCGCAGTTCGGCGGCGGCTATCTGGAA TTTGAGCCGCATCGCGAGCATGTATATGTTAACCATGAGCTGGAGAAGAG TACCGGCTGTTATTTTGCCCCGGCCGACCGCTCGTTGCTCATTTTGAACG TGCTGCAGTCGAAGGAGCACTGGGGCTGCGGCTTGAATATTGAGCGATTG CTTTACGAAGAAAAGGTTGAACAGGCGTTTGCGCTGCATTCGGTGCCGGA GAAAAAACGACTTGTGAGGGAGGTCATCTGGAGGCAGTGGTGGAATCCTA TCCGAGAGCCTCCGTTCCATGAGATTAAGGACTATCTCGGAGCCCGTGTG ACGTTTTACTTTGTGTTTGTGAGCTTTTACGCACGACGCTTGCTACCGCT CGGACTGTTGTCTATCCCAGTGTTTGTTGTGTATCGCGCAGTGAGAAACC TCGAGGCGTTAGTAATCGTGCGCTGGGTGTTTTCCATCGGACTGGTCTTA TGGACCACGTACTTCTTGGAGAACTGGAAGAGACGAACGGCCATGGTGAA TACCAAATGGGGTCTGCATGACTACCAGGAGGATACCATGGACGACACTC GCGTGCAATTCGAGGGCGAACATCGCTACGGATTCTACAGCAAGGGCGGT TTCGTGCCGCTAGACGATCTAGCCATGTACAGCGACTACTGCCTGCCATC CGAGAGCAACAGTCGCATCAGCAGCAGCAGCAAGAAATTAGAGGTGGAAG CCATGGGCGAGCGTCAGGGAAGCAGAGTATTACTGCCTCGAAACCCTTAC CAAGACCCGCGCAAGAAACGGAACGCACTGCTGGTTTCTACGGGTGTGAC GGCGGTTTTCGTGGTGATTGTAGGCGCGTTGACGTTCCTGTTGCTGTGGT TTCGAAACGAGATTGTGACTTGGAGCAAGCAACGCGTTTCAAACGACTTT GCGAGCGCGGTGCCTGGTGTACTGAACGGATTGCTTACGTTTGTGTTCGA CTCGATTTGGAGATCGGTTTCGATGTGGCTGACAAGACGGGAGAATCATC GCACGAACCAACACTTCGAGAACAGCCTCATCTACAAGCGATTTGCGTTC ATGTTTGTGTCAAACTATATCTCGCTGTTCTACATCGCGTTCGTGCGCAA GTACTTGGAAAACACGTGCCCAGCCGGTATCATCCCAGGGGTGGAGAGAG ACTGCATGCGCGAGCTAGAGAGCCAGATGCTGTCACTGGTACTGACCAAA GCGACAATTGGGCAAGTGATGGAAATTGGAATTCCGTGGATAACGAGCAC ATTGAAGCAACTGAACGCGCGTATACGCTCGTCCAAACGCGGACAACAAA CGGCACAGCACGGCGGATACAACCGGTATGTGGCGGAGAGCAAACTGAGC AAATACCACTCGACGATGGAGGACTACAGCGAGCTGGTGATGCAGTTCGG GTTCCTGGTGTTGTTCGGGGTGGCGTTCCCGCTGGCAGCGGTGGTGAACA TCGTGAACAACACGCTGGAGGTGCGCACAGACGCGTACAAGTTGCTGGCG CTGTCGCAGCGAGTGGACGCGGACGACGCGGCGGACATCGGCGCGTGGTA CGCCATCTTGCAGCTGCTGAACGTGCTGTCGGTGTGGTGCAACGCGGCGC TGCTGATCTTCACGTCGGAGTCGCTGGACTTGTTGCTACCGAGCGAGGCG GACCGCTGGCAGCGCGTGCTGTACCGCGTGACGGCGTTCTTCGTGCTGGA GCACGTGCTGCTGGGCATCAAGGCGGCGGCGGCGGCGCTGATCCGAGACG TGCCCAACAAGACGCGTCGCGCGCTGGCGCGCCAGTCTTTCGATATTGCG CGCCACTTCGATTTGCGCTGGCGGGAGCACTTTCGCGGCGCGCCTCTGCT GCGACTGGCACCCGAGCAGCTGCGGCGTGGCGCGCGTCACGCGCGCGTGT TCGACGCGCCGTCTCACGGCTGA back to top
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