Gcaud1758.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1758.t1
Unique Name	Gcaud1758.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	400

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_800_length_17764_cov_4.050076	contig	NODE_800_length_17764_cov_4.050076:3308..4507 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009621633.1
PFAMs	DnaJ,DnaJ_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09510
GOs	GO:0000226,GO:0001578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032838,GO:0035082,GO:0036126,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097223,GO:0097224,GO:0097729,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904158
Evalue	1.14e-25
EggNOG OGs	COG0484@1\|root,KOG0714@2759\|Eukaryota,37KKV@33090\|Viridiplantae,3GCCP@35493\|Streptophyta,44NWU@71274\|asterids
Description	DnaJ C terminal domain
COG category	O
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1758	Gcaud1758	Gracilaria caudata M_176_S67 male	gene	NODE_800_length_17764_cov_4.050076 3308..4507 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1758.t1.stop1	Gcaud1758.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_800_length_17764_cov_4.050076 3308..3310 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1758.t1.CDS1	Gcaud1758.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_800_length_17764_cov_4.050076 3308..4507 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1758.t1.exon1	Gcaud1758.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_800_length_17764_cov_4.050076 3308..4507 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1758.t1.start1	Gcaud1758.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_800_length_17764_cov_4.050076 4505..4507 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1758.t1	Gcaud1758.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_800_length_17764_cov_4.050076 3308..4507 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_800_length_17764_cov_4.050076:3308..4507-
coding sequence from alignment at NODE_800_length_17764_cov_4.050076:3308..4507-

mRNA sequence

>Gcaud1758.t1 ID=Gcaud1758.t1|Name=Gcaud1758.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=400bp
MPDKPVDAYAVLGVSPNASSQQIRRAYKALCLRWHPDKHPPGSARRAAER
QFKSISVAYATVAERHSKRATSSGRHHSSTASTSSHSRNHFPSSANAADF
EDDGAFFFHDVCDSDDDDMHHYNGENSYRSATRHQDFVLELPLTLPEYAA
GCVKQHRLPADEADGTAKLLRVVVKPGYRPGDRIRFRHVRSDGGDVVFTL
TQSMAPPWTDAKLHGDDVHITQRIQLVDALTGARISVCTPRGTRCMRVLP
VIAPGATRVVPGCGLPCRTDPDQFGDVVVRFEVVFPTKVDDASKMKLREV
FSRLENSRMRRCSSVFSAKAFRRHEQPQKRTCSYCEREDDSEDTARTETP
PGAGARGGVDGEDLKQRAASKDDRGGATQHQRLRSMFAKSSNKLASVFR*

spliced messenger RNA

>Gcaud1758.t1 ID=Gcaud1758.t1|Name=Gcaud1758.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:3308..4507- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGACAAACCCGTCGACGCGTACGCCGTGCTGGGCGTATCGCCCAA
CGCGTCGTCGCAGCAGATACGTCGCGCCTACAAGGCGCTCTGTCTACGAT
GGCATCCGGACAAGCATCCTCCCGGCTCTGCGCGCCGCGCCGCAGAGCGT
CAGTTCAAGTCCATTTCCGTGGCGTACGCCACCGTAGCCGAGCGTCATTC
AAAACGCGCAACGTCTTCAGGCAGACATCACTCATCCACCGCCAGCACCT
CTTCGCACTCGCGCAACCATTTCCCGTCATCTGCCAACGCCGCCGATTTC
GAGGACGACGGGGCGTTTTTCTTCCACGACGTTTGCGACAGTGACGACGA
TGACATGCACCATTACAACGGCGAAAATTCGTATCGCTCCGCAACTCGCC
ACCAGGATTTTGTGCTGGAACTACCGCTCACGCTTCCGGAGTATGCCGCA
GGTTGTGTGAAGCAGCATCGTCTGCCCGCCGACGAAGCCGACGGCACTGC
CAAGTTACTGCGCGTGGTGGTGAAGCCGGGTTACCGACCCGGCGATCGCA
TTCGCTTTCGGCACGTGCGTTCCGATGGCGGTGATGTGGTGTTCACGCTC
ACGCAGTCGATGGCGCCGCCTTGGACCGATGCCAAGTTGCACGGTGACGA
CGTTCATATTACGCAGCGTATTCAGTTAGTGGACGCGCTCACGGGCGCGC
GTATCTCCGTGTGCACGCCGCGGGGCACACGGTGTATGCGCGTGTTACCA
GTGATTGCGCCGGGCGCTACGAGGGTGGTGCCTGGATGTGGGCTGCCTTG
CCGCACGGATCCGGATCAGTTTGGCGACGTGGTGGTGCGGTTTGAGGTGG
TGTTTCCGACCAAGGTGGATGACGCGTCGAAGATGAAACTGAGAGAGGTG
TTTTCTAGGCTGGAGAACTCGAGGATGAGACGCTGTTCGTCTGTGTTCAG
CGCCAAGGCGTTTAGAAGACATGAGCAGCCGCAAAAGAGGACGTGTAGCT
ACTGCGAGAGGGAGGACGATAGTGAGGACACCGCACGTACGGAAACGCCG
CCTGGTGCGGGCGCGAGGGGTGGGGTGGATGGGGAGGATTTGAAACAACG
CGCCGCTTCTAAGGATGATCGTGGCGGCGCGACGCAACACCAGAGACTGC
GTTCCATGTTCGCGAAGAGTTCCAACAAGCTGGCCTCGGTGTTCCGTTGA

protein sequence of Gcaud1758.t1

>Gcaud1758.t1 ID=Gcaud1758.t1|Name=Gcaud1758.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=400bp
MPDKPVDAYAVLGVSPNASSQQIRRAYKALCLRWHPDKHPPGSARRAAER
QFKSISVAYATVAERHSKRATSSGRHHSSTASTSSHSRNHFPSSANAADF
EDDGAFFFHDVCDSDDDDMHHYNGENSYRSATRHQDFVLELPLTLPEYAA
GCVKQHRLPADEADGTAKLLRVVVKPGYRPGDRIRFRHVRSDGGDVVFTL
TQSMAPPWTDAKLHGDDVHITQRIQLVDALTGARISVCTPRGTRCMRVLP
VIAPGATRVVPGCGLPCRTDPDQFGDVVVRFEVVFPTKVDDASKMKLREV
FSRLENSRMRRCSSVFSAKAFRRHEQPQKRTCSYCEREDDSEDTARTETP
PGAGARGGVDGEDLKQRAASKDDRGGATQHQRLRSMFAKSSNKLASVFR*

mRNA from alignment at NODE_800_length_17764_cov_4.050076:3308..4507-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1758.t1 ID=Gcaud1758.t1|Name=Gcaud1758.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:3308..4507- (Gracilaria caudata M_176_S67 male)
ATGCCCGACAAACCCGTCGACGCGTACGCCGTGCTGGGCGTATCGCCCAA
CGCGTCGTCGCAGCAGATACGTCGCGCCTACAAGGCGCTCTGTCTACGAT
GGCATCCGGACAAGCATCCTCCCGGCTCTGCGCGCCGCGCCGCAGAGCGT
CAGTTCAAGTCCATTTCCGTGGCGTACGCCACCGTAGCCGAGCGTCATTC
AAAACGCGCAACGTCTTCAGGCAGACATCACTCATCCACCGCCAGCACCT
CTTCGCACTCGCGCAACCATTTCCCGTCATCTGCCAACGCCGCCGATTTC
GAGGACGACGGGGCGTTTTTCTTCCACGACGTTTGCGACAGTGACGACGA
TGACATGCACCATTACAACGGCGAAAATTCGTATCGCTCCGCAACTCGCC
ACCAGGATTTTGTGCTGGAACTACCGCTCACGCTTCCGGAGTATGCCGCA
GGTTGTGTGAAGCAGCATCGTCTGCCCGCCGACGAAGCCGACGGCACTGC
CAAGTTACTGCGCGTGGTGGTGAAGCCGGGTTACCGACCCGGCGATCGCA
TTCGCTTTCGGCACGTGCGTTCCGATGGCGGTGATGTGGTGTTCACGCTC
ACGCAGTCGATGGCGCCGCCTTGGACCGATGCCAAGTTGCACGGTGACGA
CGTTCATATTACGCAGCGTATTCAGTTAGTGGACGCGCTCACGGGCGCGC
GTATCTCCGTGTGCACGCCGCGGGGCACACGGTGTATGCGCGTGTTACCA
GTGATTGCGCCGGGCGCTACGAGGGTGGTGCCTGGATGTGGGCTGCCTTG
CCGCACGGATCCGGATCAGTTTGGCGACGTGGTGGTGCGGTTTGAGGTGG
TGTTTCCGACCAAGGTGGATGACGCGTCGAAGATGAAACTGAGAGAGGTG
TTTTCTAGGCTGGAGAACTCGAGGATGAGACGCTGTTCGTCTGTGTTCAG
CGCCAAGGCGTTTAGAAGACATGAGCAGCCGCAAAAGAGGACGTGTAGCT
ACTGCGAGAGGGAGGACGATAGTGAGGACACCGCACGTACGGAAACGCCG
CCTGGTGCGGGCGCGAGGGGTGGGGTGGATGGGGAGGATTTGAAACAACG
CGCCGCTTCTAAGGATGATCGTGGCGGCGCGACGCAACACCAGAGACTGC
GTTCCATGTTCGCGAAGAGTTCCAACAAGCTGGCCTCGGTGTTCCGTTGA

Coding sequence (CDS) from alignment at NODE_800_length_17764_cov_4.050076:3308..4507-

>Gcaud1758.t1 ID=Gcaud1758.t1|Name=Gcaud1758.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1200bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:3308..4507- (Gracilaria caudata M_176_S67 male)
ATGCCCGACAAACCCGTCGACGCGTACGCCGTGCTGGGCGTATCGCCCAA
CGCGTCGTCGCAGCAGATACGTCGCGCCTACAAGGCGCTCTGTCTACGAT
GGCATCCGGACAAGCATCCTCCCGGCTCTGCGCGCCGCGCCGCAGAGCGT
CAGTTCAAGTCCATTTCCGTGGCGTACGCCACCGTAGCCGAGCGTCATTC
AAAACGCGCAACGTCTTCAGGCAGACATCACTCATCCACCGCCAGCACCT
CTTCGCACTCGCGCAACCATTTCCCGTCATCTGCCAACGCCGCCGATTTC
GAGGACGACGGGGCGTTTTTCTTCCACGACGTTTGCGACAGTGACGACGA
TGACATGCACCATTACAACGGCGAAAATTCGTATCGCTCCGCAACTCGCC
ACCAGGATTTTGTGCTGGAACTACCGCTCACGCTTCCGGAGTATGCCGCA
GGTTGTGTGAAGCAGCATCGTCTGCCCGCCGACGAAGCCGACGGCACTGC
CAAGTTACTGCGCGTGGTGGTGAAGCCGGGTTACCGACCCGGCGATCGCA
TTCGCTTTCGGCACGTGCGTTCCGATGGCGGTGATGTGGTGTTCACGCTC
ACGCAGTCGATGGCGCCGCCTTGGACCGATGCCAAGTTGCACGGTGACGA
CGTTCATATTACGCAGCGTATTCAGTTAGTGGACGCGCTCACGGGCGCGC
GTATCTCCGTGTGCACGCCGCGGGGCACACGGTGTATGCGCGTGTTACCA
GTGATTGCGCCGGGCGCTACGAGGGTGGTGCCTGGATGTGGGCTGCCTTG
CCGCACGGATCCGGATCAGTTTGGCGACGTGGTGGTGCGGTTTGAGGTGG
TGTTTCCGACCAAGGTGGATGACGCGTCGAAGATGAAACTGAGAGAGGTG
TTTTCTAGGCTGGAGAACTCGAGGATGAGACGCTGTTCGTCTGTGTTCAG
CGCCAAGGCGTTTAGAAGACATGAGCAGCCGCAAAAGAGGACGTGTAGCT
ACTGCGAGAGGGAGGACGATAGTGAGGACACCGCACGTACGGAAACGCCG
CCTGGTGCGGGCGCGAGGGGTGGGGTGGATGGGGAGGATTTGAAACAACG
CGCCGCTTCTAAGGATGATCGTGGCGGCGCGACGCAACACCAGAGACTGC
GTTCCATGTTCGCGAAGAGTTCCAACAAGCTGGCCTCGGTGTTCCGTTGA