Gcaud1761.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1761.t1
Unique Name	Gcaud1761.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_800_length_17764_cov_4.050076	contig	NODE_800_length_17764_cov_4.050076:12609..13802 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8083.ENSXMAP00000012481
Preferred name	ALG11
PFAMs	ALG11_N,Glycos_transf_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03844
KEGG Reaction	R06127,R06128
KEGG Pathway	ko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG Module	M00055
GOs	GO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	4.33e-63
EggNOG OGs	COG0438@1\|root,KOG1387@2759\|Eukaryota,38HCD@33154\|Opisthokonta,3BBAG@33208\|Metazoa,3CZP5@33213\|Bilateria,480CA@7711\|Chordata,48WNG@7742\|Vertebrata,4A68W@7898\|Actinopterygii
EC	2.4.1.131
Description	Asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)
COG category	M
CAZy	GT4
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1761	Gcaud1761	Gracilaria caudata M_176_S67 male	gene	NODE_800_length_17764_cov_4.050076 12609..13802 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1761.t1	Gcaud1761.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_800_length_17764_cov_4.050076 12609..13802 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1761.t1.stop1	Gcaud1761.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_800_length_17764_cov_4.050076 12609..12611 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1761.t1.CDS1	Gcaud1761.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_800_length_17764_cov_4.050076 12609..13506 -
Gcaud1761.t1.CDS2	Gcaud1761.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_800_length_17764_cov_4.050076 13615..13802 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1761.t1.exon1	Gcaud1761.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_800_length_17764_cov_4.050076 12609..13506 -
Gcaud1761.t1.exon2	Gcaud1761.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_800_length_17764_cov_4.050076 13615..13802 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1761.t1.intron1	Gcaud1761.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_800_length_17764_cov_4.050076 13507..13614 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1761.t1.start1	Gcaud1761.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_800_length_17764_cov_4.050076 13800..13802 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_800_length_17764_cov_4.050076:12609..13802-
coding sequence from alignment at NODE_800_length_17764_cov_4.050076:12609..13802-

mRNA sequence

>Gcaud1761.t1 ID=Gcaud1761.t1|Name=Gcaud1761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MKNLWPHSHIVLYSAWKSSGVSVSNAVTTSRERVRSQFGLDLSGIDFEPV
DISELAPLVDGRSFSLIVPKLLGAETLAYVHYPTISTDMLTLVRSRKQQF
NNDASIASSRVKTVVKVGYYRLFAKLYGLNARFVDIKVANSSWTAAHLRA
LWKGRIHRIFPPCKLDLELDDDIEREHGLIVSVGQFRAEKNHELQLQMMR
VLREKYADVKCRLLMLGGARNEEDRQRAARLRESAEKEGLAMTVRVNVSS
EELVRSLKKAWIGVHTMRDEHFGISVVELQAYGVVVVAHRSGGVETDIVR
DGRNGFLVGSAEEYADTVANVLRDNELSLRLRGEARKSCARFADQVFCTR
FSKVVDENFRM*

spliced messenger RNA

>Gcaud1761.t1 ID=Gcaud1761.t1|Name=Gcaud1761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:12609..13802- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAATTTGTGGCCACACAGTCACATTGTGCTCTACTCAGCATGGAA
GAGCTCGGGCGTGAGCGTCTCTAACGCAGTGACCACGTCTCGCGAGCGAG
TTCGCTCGCAGTTTGGACTTGACCTGTCTGGGATTGACTTTGAGCCGGTT
GATATCTCGGAGCTTGCTCCTCTGGTTGACGGCAGAAGCTTTTCGTTGAT
TGTACCCAAGCTGCTGGGCGCCGAGACATTGGCGTACGTGCACTATCCTA
CTATCTCCACCGACATGCTCACTCTCGTTCGCTCACGAAAGCAACAGTTT
AATAACGATGCCAGTATCGCGTCTTCGCGCGTGAAGACGGTTGTGAAGGT
GGGCTACTACAGGCTGTTTGCCAAGCTTTACGGATTGAACGCGCGATTTG
TGGACATCAAAGTGGCCAATTCGAGTTGGACCGCGGCACATTTACGCGCA
CTTTGGAAGGGACGCATCCACCGCATCTTCCCACCGTGCAAGCTGGATCT
GGAACTCGACGATGATATCGAACGCGAGCACGGTTTGATTGTGTCGGTAG
GACAGTTCCGTGCGGAGAAGAACCACGAGTTGCAGTTGCAGATGATGCGC
GTATTGCGCGAAAAGTACGCGGACGTGAAATGTAGACTGCTGATGCTTGG
AGGTGCTCGCAACGAGGAGGATCGCCAACGTGCCGCAAGGCTGCGCGAAA
GCGCCGAGAAAGAAGGTTTGGCGATGACAGTGCGAGTGAACGTTTCGAGT
GAAGAGCTAGTACGCTCTTTGAAGAAGGCGTGGATTGGCGTTCACACGAT
GCGCGACGAGCACTTTGGCATCTCTGTTGTAGAACTGCAGGCGTATGGAG
TGGTGGTCGTCGCGCATCGAAGCGGCGGTGTGGAGACAGACATCGTGCGC
GATGGACGGAACGGCTTCTTGGTGGGCTCGGCGGAGGAGTACGCCGATAC
GGTTGCCAACGTTTTGCGGGACAATGAGCTGTCGTTGCGGCTTCGAGGCG
AAGCGCGAAAGAGCTGCGCGCGTTTTGCGGACCAAGTGTTCTGTACGCGC
TTCAGCAAGGTGGTCGACGAAAACTTCCGGATGTAG

protein sequence of Gcaud1761.t1

>Gcaud1761.t1 ID=Gcaud1761.t1|Name=Gcaud1761.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MKNLWPHSHIVLYSAWKSSGVSVSNAVTTSRERVRSQFGLDLSGIDFEPV
DISELAPLVDGRSFSLIVPKLLGAETLAYVHYPTISTDMLTLVRSRKQQF
NNDASIASSRVKTVVKVGYYRLFAKLYGLNARFVDIKVANSSWTAAHLRA
LWKGRIHRIFPPCKLDLELDDDIEREHGLIVSVGQFRAEKNHELQLQMMR
VLREKYADVKCRLLMLGGARNEEDRQRAARLRESAEKEGLAMTVRVNVSS
EELVRSLKKAWIGVHTMRDEHFGISVVELQAYGVVVVAHRSGGVETDIVR
DGRNGFLVGSAEEYADTVANVLRDNELSLRLRGEARKSCARFADQVFCTR
FSKVVDENFRM*

mRNA from alignment at NODE_800_length_17764_cov_4.050076:12609..13802-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1761.t1 ID=Gcaud1761.t1|Name=Gcaud1761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:12609..13802- (Gracilaria caudata M_176_S67 male)
ATGAAGAATTTGTGGCCACACAGTCACATTGTGCTCTACTCAGCATGGAA
GAGCTCGGGCGTGAGCGTCTCTAACGCAGTGACCACGTCTCGCGAGCGAG
TTCGCTCGCAGTTTGGACTTGACCTGTCTGGGATTGACTTTGAGCCGGTT
GATATCTCGGAGCTTGCTCCTCTGGTTGACGGCAGAAGGTATTTTCGTTT
CACGTTGTTGTTTCAAGCGTTGGGTGCTTTGCGTGTGGGTGCTAAGGCCT
ATGCAAAACAACCGGTCGAACTGCTTGTTGACACTGCCAATCTTAGCTTT
TCGTTGATTGTACCCAAGCTGCTGGGCGCCGAGACATTGGCGTACGTGCA
CTATCCTACTATCTCCACCGACATGCTCACTCTCGTTCGCTCACGAAAGC
AACAGTTTAATAACGATGCCAGTATCGCGTCTTCGCGCGTGAAGACGGTT
GTGAAGGTGGGCTACTACAGGCTGTTTGCCAAGCTTTACGGATTGAACGC
GCGATTTGTGGACATCAAAGTGGCCAATTCGAGTTGGACCGCGGCACATT
TACGCGCACTTTGGAAGGGACGCATCCACCGCATCTTCCCACCGTGCAAG
CTGGATCTGGAACTCGACGATGATATCGAACGCGAGCACGGTTTGATTGT
GTCGGTAGGACAGTTCCGTGCGGAGAAGAACCACGAGTTGCAGTTGCAGA
TGATGCGCGTATTGCGCGAAAAGTACGCGGACGTGAAATGTAGACTGCTG
ATGCTTGGAGGTGCTCGCAACGAGGAGGATCGCCAACGTGCCGCAAGGCT
GCGCGAAAGCGCCGAGAAAGAAGGTTTGGCGATGACAGTGCGAGTGAACG
TTTCGAGTGAAGAGCTAGTACGCTCTTTGAAGAAGGCGTGGATTGGCGTT
CACACGATGCGCGACGAGCACTTTGGCATCTCTGTTGTAGAACTGCAGGC
GTATGGAGTGGTGGTCGTCGCGCATCGAAGCGGCGGTGTGGAGACAGACA
TCGTGCGCGATGGACGGAACGGCTTCTTGGTGGGCTCGGCGGAGGAGTAC
GCCGATACGGTTGCCAACGTTTTGCGGGACAATGAGCTGTCGTTGCGGCT
TCGAGGCGAAGCGCGAAAGAGCTGCGCGCGTTTTGCGGACCAAGTGTTCT
GTACGCGCTTCAGCAAGGTGGTCGACGAAAACTTCCGGATGTAG

Coding sequence (CDS) from alignment at NODE_800_length_17764_cov_4.050076:12609..13802-

>Gcaud1761.t1 ID=Gcaud1761.t1|Name=Gcaud1761.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_800_length_17764_cov_4.050076:12609..13802- (Gracilaria caudata M_176_S67 male)
ATGAAGAATTTGTGGCCACACAGTCACATTGTGCTCTACTCAGCATGGAA
GAGCTCGGGCGTGAGCGTCTCTAACGCAGTGACCACGTCTCGCGAGCGAG
TTCGCTCGCAGTTTGGACTTGACCTGTCTGGGATTGACTTTGAGCCGGTT
GATATCTCGGAGCTTGCTCCTCTGGTTGACGGCAGAAGCTTTTCGTTGAT
TGTACCCAAGCTGCTGGGCGCCGAGACATTGGCGTACGTGCACTATCCTA
CTATCTCCACCGACATGCTCACTCTCGTTCGCTCACGAAAGCAACAGTTT
AATAACGATGCCAGTATCGCGTCTTCGCGCGTGAAGACGGTTGTGAAGGT
GGGCTACTACAGGCTGTTTGCCAAGCTTTACGGATTGAACGCGCGATTTG
TGGACATCAAAGTGGCCAATTCGAGTTGGACCGCGGCACATTTACGCGCA
CTTTGGAAGGGACGCATCCACCGCATCTTCCCACCGTGCAAGCTGGATCT
GGAACTCGACGATGATATCGAACGCGAGCACGGTTTGATTGTGTCGGTAG
GACAGTTCCGTGCGGAGAAGAACCACGAGTTGCAGTTGCAGATGATGCGC
GTATTGCGCGAAAAGTACGCGGACGTGAAATGTAGACTGCTGATGCTTGG
AGGTGCTCGCAACGAGGAGGATCGCCAACGTGCCGCAAGGCTGCGCGAAA
GCGCCGAGAAAGAAGGTTTGGCGATGACAGTGCGAGTGAACGTTTCGAGT
GAAGAGCTAGTACGCTCTTTGAAGAAGGCGTGGATTGGCGTTCACACGAT
GCGCGACGAGCACTTTGGCATCTCTGTTGTAGAACTGCAGGCGTATGGAG
TGGTGGTCGTCGCGCATCGAAGCGGCGGTGTGGAGACAGACATCGTGCGC
GATGGACGGAACGGCTTCTTGGTGGGCTCGGCGGAGGAGTACGCCGATAC
GGTTGCCAACGTTTTGCGGGACAATGAGCTGTCGTTGCGGCTTCGAGGCG
AAGCGCGAAAGAGCTGCGCGCGTTTTGCGGACCAAGTGTTCTGTACGCGC
TTCAGCAAGGTGGTCGACGAAAACTTCCGGATGTAG